Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000142

Physical Location & Seq

Genomic Coordinates Reverse (-)

76661837 .. 76662666

Gene Structure 830 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021596

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGTCAGATATGACTGAGACGATGGGGGAGAAGGAGAGGTGGTCGCAAGGACTCCCAGATGATATATTGCAATTGATAGCACAACGACTATACATATCAGATTACCTGGTGTTTCGCCAAGTATGCGCTTTTTGGCGAGCCGCTGTGGATAGAGGTATTGCCACCGGATCTTGCCCTCCTGCTCCTCAACTTCCATGGCTTTTGCTTCACGACTCCTATGGCTTTTGGACGGGGAATTATGAATCCCTCGACGCCTTCTACATCGAACGACACCAATACTCCTTTCTAAGGGCTCCAACATCCTTCAGATCAGAAATTATGTCGTCTCCTGTTTCTTCCTTACGACATTCGGACATTGTGCCAACTGATACATCATGGACCCTCATTGAGACCATAGATGGGCTCGTCTATAAAGATATTGAAATAATTGAGTTGCAGGGCTTAGAGACAAGCTTGGACACAAGTGCTATGTACTGGAATTTGACATACTCTCTGAAGATGACAATGTCACTAGGGCCAAATACAATTGTAGGCTCTGCATTGACGTCCCGAATTTTGCTGATTCGAATTCGAGACGGTACCCTTGTCTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000463 GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0010468 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0022613 GO:0030684 GO:0030686 GO:0031323 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044087 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0070545 GO:0071704 GO:0071840 GO:0080090 GO:0090069 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904 GO:2000232

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT_2 Pescadillo_N

Protein Analysis

198

Amino Acids

22.47

Weight (kDa)

4.79

Isoelectric Point (pI)

57.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000142)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13532 FvH4_2g28870 FvH4_3g30930 FvH4_3g37281 FvH4_3g37300 FvH4_3g37301 FvH4_3g37301 FvH4_4g23711 FvH4_5g02330 FvH4_6g16960 FvH4_6g16971 FvH4_6g21291 FvH4_6g21331 FvH4_6g22212 FvH4_6g22332 FvH4_6g36920 FvH4_6g37552 FvH4_6g37591 FvH4_6g39721 FvH4_6g46020 FvH4_6g47001 FvH4_6g47002 FvH4_6g47130 FvH4_6g47140 FvH4_6g47161 FvH4_6g47170 FvH4_6g47190 FvH4_6g49120 FvH4_6g49280 FvH4_6g49281 FvH4_6g49640 FvH4_6g49640
malus_domestica	MD03G1085600.v1.1 MD09G1027500.v1.1 MD09G1050100.v1.1
prunus_persica	Prupe.1G004300_v2.0.a1 Prupe.1G016300_v2.0.a1 Prupe.1G019300_v2.0.a1 Prupe.3G239100_v2.0.a1 Prupe.3G291200_v2.0.a1
pyrus_communis	pycom08g02840 pycom08g02860 pycom08g02870
rosa_chinensis	RchiOBHm_Chr2g0153831 RchiOBHm_Chr2g0166171 RchiOBHm_Chr2g0166201 RchiOBHm_Chr3g0476221 RchiOBHm_Chr4g0430971 RchiOBHm_Chr5g0067081 RchiOBHm_Chr7g0197821
rosa_laevigata	RLG00000001284 RLG00000006996 RLG00000012710 RLG00000019299 RLG00000020285 RLG00000020444 RLG00000020466 RLG00000020591 RLG00000020665 RLG00000020730 RLG00000020732 RLG00000021449 RLG00000021592 RLG00000021593 RLG00000021594 RLG00000021596 RLG00000021597 RLG00000021801 RLG00000023534 RLG00000023538 RLG00000023693 RLG00000023694 RLG00000023699 RLG00000024196 RLG00000024214 RLG00000024220 RLG00000024244 RLG00000024608 RLG00000024612 RLG00000035157 RLG00000035906
rosa_multiflora	Rmu_co8282815.1_g000001 Rmu_co8380495.1_g000001 Rmu_co8381111.1_g000001 Rmu_co8460513.1_g000001 Rmu_co8481947.1_g000001 Rmu_co8487937.1_g000001 Rmu_sc0000151.1_g000017 Rmu_sc0001427.1_g000003 Rmu_sc0001427.1_g000006 Rmu_sc0002611.1_g000008 Rmu_sc0003887.1_g000018 Rmu_sc0003887.1_g000019 Rmu_sc0003887.1_g000021 Rmu_sc0004119.1_g000004 Rmu_sc0004329.1_g000003 Rmu_sc0004485.1_g000024 Rmu_sc0005290.1_g000001 Rmu_sc0005609.1_g000006 Rmu_sc0006187.1_g000018 Rmu_sc0006218.1_g000032 Rmu_sc0006218.1_g000033 Rmu_sc0007150.1_g000003 Rmu_sc0007154.1_g000004 Rmu_sc0007154.1_g000005 Rmu_sc0007154.1_g000007 Rmu_sc0008314.1_g000012 Rmu_sc0010073.1_g000023 Rmu_sc0010073.1_g000025 Rmu_sc0011216.1_g000008 Rmu_sc0012445.1_g000005 Rmu_sc0013571.1_g000002 Rmu_sc0018648.1_g000002 Rmu_sc0020961.1_g000002 Rmu_sc0020961.1_g000003 Rmu_sc0023710.1_g000001 Rmu_sc0031310.1_g000008 Rmu_sc0033940.1_g000001 Rmu_sc0035493.1_g000001 Rmu_sc0039285.1_g000001
rosa_roxburghii	Rroxscaffold_1G00014000 Rroxscaffold_1G00014020 Rroxscaffold_2G00082760 Rroxscaffold_2G00085090 Rroxscaffold_2G00085100 Rroxscaffold_2G00085140 Rroxscaffold_2G00086670 Rroxscaffold_2G00086680 Rroxscaffold_2G00098190 Rroxscaffold_2G00099270 Rroxscaffold_3G00227460 Rroxscaffold_3G00258190 Rroxscaffold_3G00259780 Rroxscaffold_6G00402940 Rroxscaffold_6G00410200 Rroxscaffold_6G00410210 Rroxscaffold_7G00184320
rosa_rugosa	Rorug02G0416100 Rorug02G0416200 Rorug02G0520900 Rorug02G0521200 Rorug02G0521300 Rorug02G0534600 Rorug03G0116300 Rorug03G0162900 Rorug03G0162900 Rorug04G0241400 Rorug05G0380900 Rorug07G0043800
rosa_samantha	Rh1AG115300 Rh2BG483700 Rh2BG509900 Rh2BG515700 Rh2BG515800 Rh2BG586500 Rh2BG586600 Rh2BG586700 Rh2BG598800 Rh2BG598900 Rh2BG599100 Rh2BG618400 Rh2BG630500 Rh2CG457400 Rh2CG484900 Rh3AG165300 Rh3AG212900 Rh3AG213300 Rh3BG145800 Rh3BG146100 Rh3BG235300 Rh3BG246500 Rh3BG247000 Rh3BG247100 Rh3CG240300 Rh3CG240800 Rh3CG240900 Rh3CG259600 Rh3DG147000 Rh3DG184800 Rh3DG184900 Rh3DG185000 Rh3DG239500 Rh3DG240100 Rh3DG240200 Rh3DG255800 Rh5BG458500 Rh5CG480400 Rh7BG170400 Rh7BG407900 Rh7CG176900
rosa_wichuraiana	Rw2G038990 Rw2G041550 Rw2G047660 Rw2G048940 Rw4G026370 Rw6G008730 Rw7G014600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	548
Acc65I	GGTACC	1 cut(s)	578
AccB1I	GGYRCC	1 cut(s)	578
AciI	CCGC	1 cut(s)	141
AclWI	GGATC	1 cut(s)	175
AcsI	RAATTY	3 cut(s)	478, 552, 567
AcuI	CTGAAG	2 cut(s)	289, 515
AcyI	GRCGYC	2 cut(s)	252, 545
AfaI	GTAC	2 cut(s)	473, 580
AfiI	CCNNNNNNNGG	3 cut(s)	288, 399, 588
AgsI	TTSAA	1 cut(s)	422
AjnI	CCWGG	1 cut(s)	105
AjuI	GAANNNNNNNTTGG	2 cut(s)	267, 299
AluBI	AGCT	1 cut(s)	453
AluI	AGCT	1 cut(s)	453
Alw26I	GTCTC	5 cut(s)	11, 330, 383, 440, 567
AlwI	GGATC	1 cut(s)	175
AoxI	GGCC	1 cut(s)	515
ApoI	RAATTY	3 cut(s)	478, 552, 567
Asp718I	GGTACC	1 cut(s)	578
AspLEI	GCGC	1 cut(s)	128
AspS9I	GGNCC	2 cut(s)	378, 515
AsuII	TTCGAA	1 cut(s)	565
AvaII	GGWCC	1 cut(s)	378
BaeI	ACNNNNGTAYC	1 cut(s)	570
BanI	GGYRCC	1 cut(s)	578
BanII	GRGCYC	2 cut(s)	295, 405
BccI	CCATC	2 cut(s)	16, 392
BciT130I	CCWGG	1 cut(s)	107
BcoDI	GTCTC	5 cut(s)	11, 330, 383, 440, 567
BfaI	CTAG	1 cut(s)	512
BisI	GCNGC	1 cut(s)	141
BlsI	GCNGC	1 cut(s)	142
Bme1390I	CCNGG	1 cut(s)	107
Bme18I	GGWCC	1 cut(s)	378
BmgT120I	GGNCC	2 cut(s)	378, 515
BmiI	GGNNCC	3 cut(s)	294, 380, 580
BmrFI	CCNGG	1 cut(s)	107
Bpu14I	TTCGAA	1 cut(s)	565
BsaHI	GRCGYC	2 cut(s)	252, 545
BsaI	GGTCTC	1 cut(s)	383
BsaJI	CCNNGG	1 cut(s)	194
BsaWI	WCCGGW	1 cut(s)	164
BsaXI	ACNNNNNCTCC	4 cut(s)	26, 56, 263, 293
Bsc4I	CCNNNNNNNGG	3 cut(s)	288, 399, 588
Bse1I	ACTGG	1 cut(s)	479
BseBI	CCWGG	1 cut(s)	107
BseDI	CCNNGG	1 cut(s)	194
BseGI	GGATG	1 cut(s)	299
BseLI	CCNNNNNNNGG	3 cut(s)	288, 399, 588
BseMII	CTCAG	1 cut(s)	6
BseNI	ACTGG	1 cut(s)	479
BseRI	GAGGAG	1 cut(s)	174
BshFI	GGCC	1 cut(s)	517
BshNI	GGYRCC	1 cut(s)	578
BsiSI	CCGG	1 cut(s)	165
BslFI	GGGAC	1 cut(s)	532
BslI	CCNNNNNNNGG	3 cut(s)	288, 399, 588
BsmAI	GTCTC	5 cut(s)	11, 330, 383, 440, 567
BsmBI	CGTCTC	3 cut(s)	11, 330, 567
BsmFI	GGGAC	1 cut(s)	532
BsnI	GGCC	1 cut(s)	517
Bso31I	GGTCTC	1 cut(s)	383
Bsp119I	TTCGAA	1 cut(s)	565
Bsp1286I	GDGCHC	2 cut(s)	295, 405
Bsp143I	GATC	2 cut(s)	167, 308
Bsp19I	CCATGG	1 cut(s)	194
BspACI	CCGC	1 cut(s)	141
BspANI	GGCC	1 cut(s)	517
BspCNI	CTCAG	1 cut(s)	7
BspLI	GGNNCC	3 cut(s)	294, 380, 580
BspPI	GGATC	1 cut(s)	175
BspT104I	TTCGAA	1 cut(s)	565
BspT107I	GGYRCC	1 cut(s)	578
BspTNI	GGTCTC	1 cut(s)	383
BsrI	ACTGG	1 cut(s)	479
BssECI	CCNNGG	1 cut(s)	194
BssMI	GATC	2 cut(s)	167, 308
BssNI	GRCGYC	2 cut(s)	252, 545
BssT1I	CCWWGG	1 cut(s)	194
Bst2UI	CCWGG	1 cut(s)	107
Bst4CI	ACNGT	1 cut(s)	578
BstACI	GRCGYC	2 cut(s)	252, 545
BstBI	TTCGAA	1 cut(s)	565
BstC8I	GCNNGC	1 cut(s)	138
BstDEI	CTNAG	3 cut(s)	15, 287, 442
BstDSI	CCRYGG	1 cut(s)	194
BstENI	CCTNNNNNAGG	1 cut(s)	286
BstF5I	GGATG	1 cut(s)	299
BstHHI	GCGC	1 cut(s)	128
BstKTI	GATC	2 cut(s)	170, 311
BstMAI	GTCTC	5 cut(s)	11, 330, 383, 440, 567
BstMBI	GATC	2 cut(s)	167, 308
BstMWI	GCNNNNNNNGC	1 cut(s)	123
BstNI	CCWGG	1 cut(s)	107
BstSCI	CCNGG	1 cut(s)	105
BstX2I	RGATCY	1 cut(s)	167
BstYI	RGATCY	1 cut(s)	167
BsuRI	GGCC	1 cut(s)	517
BtgI	CCRYGG	1 cut(s)	194
BtsCI	GGATG	1 cut(s)	299
Cac8I	GCNNGC	1 cut(s)	138
CfoI	GCGC	1 cut(s)	128
Cfr13I	GGNCC	2 cut(s)	378, 515
CseI	GACGC	1 cut(s)	260
CsiI	ACCWGGT	1 cut(s)	105
Csp6I	GTAC	2 cut(s)	472, 579
CviAII	CATG	2 cut(s)	195, 375
CviJI	RGCY	9 cut(s)	140, 199, 222, 293, 403, 441, 453, 517, 534
CviKI_1	RGCY	9 cut(s)	140, 199, 222, 293, 403, 441, 453, 517, 534
CviQI	GTAC	2 cut(s)	472, 579
DdeI	CTNAG	3 cut(s)	15, 287, 442
DpnI	GATC	2 cut(s)	169, 310
DpnII	GATC	2 cut(s)	167, 308
Eco130I	CCWWGG	1 cut(s)	194
Eco24I	GRGCYC	2 cut(s)	295, 405
Eco31I	GGTCTC	1 cut(s)	383
Eco47I	GGWCC	1 cut(s)	378
Eco57I	CTGAAG	2 cut(s)	289, 515
EcoNI	CCTNNNNNAGG	1 cut(s)	286
EcoRI	GAATTC	1 cut(s)	567
EcoRII	CCWGG	1 cut(s)	105
EcoT14I	CCWWGG	1 cut(s)	194
EcoT38I	GRGCYC	2 cut(s)	295, 405
ErhI	CCWWGG	1 cut(s)	194
Esp3I	CGTCTC	3 cut(s)	11, 330, 567
FaeI	CATG	2 cut(s)	198, 378
FaqI	GGGAC	1 cut(s)	532
FatI	CATG	2 cut(s)	194, 374
Fnu4HI	GCNGC	1 cut(s)	141
FokI	GGATG	1 cut(s)	286
FriOI	GRGCYC	2 cut(s)	295, 405
Fsp4HI	GCNGC	1 cut(s)	141
FspBI	CTAG	1 cut(s)	512
GlaI	GCGC	1 cut(s)	127
GluI	GCNGC	1 cut(s)	141
HaeIII	GGCC	1 cut(s)	517
HapII	CCGG	1 cut(s)	165
HgaI	GACGC	1 cut(s)	260
HhaI	GCGC	1 cut(s)	128
Hin1I	GRCGYC	2 cut(s)	252, 545
Hin1II	CATG	2 cut(s)	198, 378
Hin6I	GCGC	1 cut(s)	126
HinP1I	GCGC	1 cut(s)	126
HindIII	AAGCTT	1 cut(s)	451
HinfI	GANTC	4 cut(s)	51, 212, 242, 562
HpaII	CCGG	1 cut(s)	165
Hpy188I	TCNGA	6 cut(s)	7, 100, 308, 313, 352, 495
Hpy188III	TCNNGA	3 cut(s)	209, 549, 572
Hpy99I	CGWCG	1 cut(s)	254
HpyAV	CCTTC	3 cut(s)	25, 265, 313
HpyCH4III	ACNGT	1 cut(s)	578
HpyCH4IV	ACGT	1 cut(s)	545
HpyCH4V	TGCA	3 cut(s)	70, 436, 539
HpyF10VI	GCNNNNNNNGC	1 cut(s)	123
HpyF3I	CTNAG	3 cut(s)	15, 287, 442
HpySE526I	ACGT	1 cut(s)	545
Hsp92I	GRCGYC	2 cut(s)	252, 545
Hsp92II	CATG	2 cut(s)	198, 378
HspAI	GCGC	1 cut(s)	126
KpnI	GGTACC	1 cut(s)	582
Kzo9I	GATC	2 cut(s)	167, 308
LmnI	GCTCC	2 cut(s)	187, 298
LpnPI	CCDG	9 cut(s)	69, 92, 119, 178, 192, 342, 422, 460, 574
MabI	ACCWGGT	1 cut(s)	105
MaeI	CTAG	1 cut(s)	512
MaeII	ACGT	1 cut(s)	545
MaeIII	GTNAC	1 cut(s)	507
MalI	GATC	2 cut(s)	169, 310
MboI	GATC	2 cut(s)	167, 308
MboII	GAAGA	2 cut(s)	327, 508
MfeI	CAATTG	2 cut(s)	71, 525
MflI	RGATCY	1 cut(s)	167
MhlI	GDGCHC	2 cut(s)	295, 405
MluCI	AATT	8 cut(s)	71, 235, 315, 426, 478, 525, 552, 567
MlyI	GAGTC	2 cut(s)	45, 206
MmeI	TCCRAC	1 cut(s)	320
MnlI	CCTC	6 cut(s)	30, 146, 186, 195, 257, 392
MspA1I	CMGCKG	1 cut(s)	143
MspI	CCGG	1 cut(s)	165
MspR9I	CCNGG	1 cut(s)	107
MunI	CAATTG	2 cut(s)	71, 525
MvaI	CCWGG	1 cut(s)	107
MwoI	GCNNNNNNNGC	1 cut(s)	123
NcoI	CCATGG	1 cut(s)	194
NdeII	GATC	2 cut(s)	167, 308
NlaIII	CATG	2 cut(s)	198, 378
NlaIV	GGNNCC	3 cut(s)	294, 380, 580
NmuCI	GTSAC	1 cut(s)	507
NspV	TTCGAA	1 cut(s)	565
PfeI	GAWTC	2 cut(s)	242, 562
PflFI	GACNNNGTC	1 cut(s)	505
PkrI	GCNGC	1 cut(s)	142
PleI	GAGTC	2 cut(s)	45, 206
PpsI	GAGTC	2 cut(s)	45, 206
Psp6I	CCWGG	1 cut(s)	105
PspGI	CCWGG	1 cut(s)	105
PspN4I	GGNNCC	3 cut(s)	294, 380, 580
PspPI	GGNCC	2 cut(s)	378, 515
PsuI	RGATCY	1 cut(s)	167
PsyI	GACNNNGTC	1 cut(s)	505
RsaI	GTAC	2 cut(s)	473, 580
RsaNI	GTAC	2 cut(s)	472, 579
SatI	GCNGC	1 cut(s)	141
Sau3AI	GATC	2 cut(s)	167, 308
Sau96I	GGNCC	2 cut(s)	378, 515
SchI	GAGTC	2 cut(s)	45, 206
ScrFI	CCNGG	1 cut(s)	107
SduI	GDGCHC	2 cut(s)	295, 405
SetI	ASST	5 cut(s)	41, 108, 157, 455, 548
SexAI	ACCWGGT	1 cut(s)	105
SfuI	TTCGAA	1 cut(s)	565
SinI	GGWCC	1 cut(s)	378
Sse9I	AATT	8 cut(s)	71, 235, 315, 426, 478, 525, 552, 567
SsiI	CCGC	1 cut(s)	141
SspMI	CTAG	1 cut(s)	512
StyD4I	CCNGG	1 cut(s)	105
StyI	CCWWGG	1 cut(s)	194
TaaI	ACNGT	1 cut(s)	578
TaiI	ACGT	1 cut(s)	548
TaqI	TCGA	4 cut(s)	249, 264, 565, 571
TasI	AATT	8 cut(s)	71, 235, 315, 426, 478, 525, 552, 567
TatI	WGTACW	1 cut(s)	471
TauI	GCSGC	1 cut(s)	143
TfiI	GAWTC	2 cut(s)	242, 562
TseFI	GTSAC	1 cut(s)	507
Tsp45I	GTSAC	1 cut(s)	507
TspDTI	ATGAA	1 cut(s)	255
Tth111I	GACNNNGTC	1 cut(s)	505
VpaK11BI	GGWCC	1 cut(s)	378
XagI	CCTNNNNNAGG	1 cut(s)	286
XapI	RAATTY	3 cut(s)	478, 552, 567
XspI	CTAG	1 cut(s)	512
ZraI	GACGTC	1 cut(s)	546

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.