RLG00000021801

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000142
Physical Location & Seq
Forward (+)
78404915 .. 78406073
1159 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021801

Sequence Viewer

Length: 753 bp
ATGTCTGAGGTCGAATGTTGGCGTCCCGAAGGTTATTTGAATCCTTGGTCAACTGACCTACTGTATATGCACAACCCTCCTAGCTTTGCTAGTGCAAGCTTCTTCTTGAATCCAATATCAGGTGACCGAGTCATGCTCCCATCCCCATCCACAATTCCATTACCCAGCAACTTTGAATCTTTCTTCTTGACCAAAGTAGTAGCCTCTTCGGCACCAACAAGCCGGCACTGTTTTGTGGCCGGCTTGTGTACAGTGTATTGTCACTTGGCTTTGTGTAGGCCAACCGATGAATCATGGACTCTCATAAAGGCAAAGGAAGACATCGGCGAGCTTCTGTTTTACGATATAGAAATAATTGATGCAAAATTATATGCTGCAGCTTGGAAGCAGGAACCGGAAGTTTCAATAGTAGTGTTTGAAATCCAAGATGTTGAAGATGCCAATAAGCCCCTTAGCTATAGGGTTGAGAGTTTGAACTTGCTTCGTTCATGGGCGACTCCGGAGAGGTGGACGGCTGATGGACTCCACGTTGGTGACTGGATTTACTTGGCAAAAGATTCTTCATCAAAGGAGTTATTTATGATTTTTCGTAGGGGTAGTTTTGCCCTTGAGGAGGATCCAATAATCTCTTGGGAGAAGATCTTACATTGTCATAATTTCAGCATTCCAGATAGGACAGAAGGATTTCGAGTGTTCAAACTAGAGTGCAATGTTAATGGTTCTCGCGATCGTACTAAAAAACCTGGTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295

Protein Analysis

251

Amino Acids

28.57

Weight (kDa)

5.21

Isoelectric Point (pI)

57.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 31 - 237 3e-17 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000142)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13532 FvH4_2g28870 FvH4_3g30930 FvH4_3g37281 FvH4_3g37300 FvH4_3g37301 FvH4_3g37301 FvH4_4g23711 FvH4_5g02330 FvH4_6g16960 FvH4_6g16971 FvH4_6g21291 FvH4_6g21331 FvH4_6g22212 FvH4_6g22332 FvH4_6g36920 FvH4_6g37552 FvH4_6g37591 FvH4_6g39721 FvH4_6g46020 FvH4_6g47001 FvH4_6g47002 FvH4_6g47130 FvH4_6g47140 FvH4_6g47161 FvH4_6g47170 FvH4_6g47190 FvH4_6g49120 FvH4_6g49280 FvH4_6g49281 FvH4_6g49640 FvH4_6g49640
malus_domestica MD03G1085600.v1.1 MD09G1027500.v1.1 MD09G1050100.v1.1
prunus_persica Prupe.1G004300_v2.0.a1 Prupe.1G016300_v2.0.a1 Prupe.1G019300_v2.0.a1 Prupe.3G239100_v2.0.a1 Prupe.3G291200_v2.0.a1
pyrus_communis pycom08g02840 pycom08g02860 pycom08g02870
rosa_chinensis RchiOBHm_Chr2g0153831 RchiOBHm_Chr2g0166171 RchiOBHm_Chr2g0166201 RchiOBHm_Chr3g0476221 RchiOBHm_Chr4g0430971 RchiOBHm_Chr5g0067081 RchiOBHm_Chr7g0197821
rosa_laevigata RLG00000001284 RLG00000006996 RLG00000012710 RLG00000019299 RLG00000020285 RLG00000020444 RLG00000020466 RLG00000020591 RLG00000020665 RLG00000020730 RLG00000020732 RLG00000021449 RLG00000021592 RLG00000021593 RLG00000021594 RLG00000021596 RLG00000021597 RLG00000021801 RLG00000023534 RLG00000023538 RLG00000023693 RLG00000023694 RLG00000023699 RLG00000024196 RLG00000024214 RLG00000024220 RLG00000024244 RLG00000024608 RLG00000024612 RLG00000035157 RLG00000035906
rosa_multiflora Rmu_co8282815.1_g000001 Rmu_co8380495.1_g000001 Rmu_co8381111.1_g000001 Rmu_co8460513.1_g000001 Rmu_co8481947.1_g000001 Rmu_co8487937.1_g000001 Rmu_sc0000151.1_g000017 Rmu_sc0001427.1_g000003 Rmu_sc0001427.1_g000006 Rmu_sc0002611.1_g000008 Rmu_sc0003887.1_g000018 Rmu_sc0003887.1_g000019 Rmu_sc0003887.1_g000021 Rmu_sc0004119.1_g000004 Rmu_sc0004329.1_g000003 Rmu_sc0004485.1_g000024 Rmu_sc0005290.1_g000001 Rmu_sc0005609.1_g000006 Rmu_sc0006187.1_g000018 Rmu_sc0006218.1_g000032 Rmu_sc0006218.1_g000033 Rmu_sc0007150.1_g000003 Rmu_sc0007154.1_g000004 Rmu_sc0007154.1_g000005 Rmu_sc0007154.1_g000007 Rmu_sc0008314.1_g000012 Rmu_sc0010073.1_g000023 Rmu_sc0010073.1_g000025 Rmu_sc0011216.1_g000008 Rmu_sc0012445.1_g000005 Rmu_sc0013571.1_g000002 Rmu_sc0018648.1_g000002 Rmu_sc0020961.1_g000002 Rmu_sc0020961.1_g000003 Rmu_sc0023710.1_g000001 Rmu_sc0031310.1_g000008 Rmu_sc0033940.1_g000001 Rmu_sc0035493.1_g000001 Rmu_sc0039285.1_g000001
rosa_roxburghii Rroxscaffold_1G00014000 Rroxscaffold_1G00014020 Rroxscaffold_2G00082760 Rroxscaffold_2G00085090 Rroxscaffold_2G00085100 Rroxscaffold_2G00085140 Rroxscaffold_2G00086670 Rroxscaffold_2G00086680 Rroxscaffold_2G00098190 Rroxscaffold_2G00099270 Rroxscaffold_3G00227460 Rroxscaffold_3G00258190 Rroxscaffold_3G00259780 Rroxscaffold_6G00402940 Rroxscaffold_6G00410200 Rroxscaffold_6G00410210 Rroxscaffold_7G00184320
rosa_rugosa Rorug02G0416100 Rorug02G0416200 Rorug02G0520900 Rorug02G0521200 Rorug02G0521300 Rorug02G0534600 Rorug03G0116300 Rorug03G0162900 Rorug03G0162900 Rorug04G0241400 Rorug05G0380900 Rorug07G0043800
rosa_samantha Rh1AG115300 Rh2BG483700 Rh2BG509900 Rh2BG515700 Rh2BG515800 Rh2BG586500 Rh2BG586600 Rh2BG586700 Rh2BG598800 Rh2BG598900 Rh2BG599100 Rh2BG618400 Rh2BG630500 Rh2CG457400 Rh2CG484900 Rh3AG165300 Rh3AG212900 Rh3AG213300 Rh3BG145800 Rh3BG146100 Rh3BG235300 Rh3BG246500 Rh3BG247000 Rh3BG247100 Rh3CG240300 Rh3CG240800 Rh3CG240900 Rh3CG259600 Rh3DG147000 Rh3DG184800 Rh3DG184900 Rh3DG185000 Rh3DG239500 Rh3DG240100 Rh3DG240200 Rh3DG255800 Rh5BG458500 Rh5CG480400 Rh7BG170400 Rh7BG407900 Rh7CG176900
rosa_wichuraiana Rw2G038990 Rw2G041550 Rw2G047660 Rw2G048940 Rw4G026370 Rw6G008730 Rw7G014600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 211
AccII CGCG 1 cut(s) 726
AccIII TCCGGA 1 cut(s) 499
AclWI GGATC 2 cut(s) 611, 624
AcoI YGGCCR 1 cut(s) 237
AcyI GRCGYC 1 cut(s) 22
AfaI GTAC 2 cut(s) 250, 733
AfiI CCNNNNNNNGG 2 cut(s) 119, 613
AgsI TTSAA 8 cut(s) 40, 109, 176, 405, 419, 434, 475, 697
AjnI CCWGG 1 cut(s) 742
AleI CACNNNNGTG 1 cut(s) 531
AluBI AGCT 5 cut(s) 84, 99, 331, 380, 456
AluI AGCT 5 cut(s) 84, 99, 331, 380, 456
AlwI GGATC 2 cut(s) 611, 624
Aor13HI TCCGGA 1 cut(s) 499
AoxI GGCC 2 cut(s) 237, 278
ApeKI GCWGC 2 cut(s) 374, 377
Asp700I GAANNNNTTC 1 cut(s) 684
AsuHPI GGTGA 2 cut(s) 134, 545
BamHI GGATCC 1 cut(s) 616
BanI GGYRCC 1 cut(s) 211
BbsI GAAGAC 1 cut(s) 324
BbvI GCAGC 2 cut(s) 361, 389
BccI CCATC 3 cut(s) 148, 154, 512
BceAI ACGGC 1 cut(s) 528
BciT130I CCWGG 1 cut(s) 744
BfaI CTAG 4 cut(s) 81, 90, 701, 751
BfmI CTRYAG 2 cut(s) 375, 457
BglI GCCNNNNNGGC 1 cut(s) 209
BglII AGATCT 1 cut(s) 639
BisI GCNGC 2 cut(s) 375, 378
BlsI GCNGC 2 cut(s) 376, 379
Bme1390I CCNGG 1 cut(s) 744
BmiI GGNNCC 3 cut(s) 213, 393, 618
BmrFI CCNGG 1 cut(s) 744
BmsI GCATC 2 cut(s) 349, 427
BpiI GAAGAC 1 cut(s) 324
BplI GAGNNNNNCTC 2 cut(s) 120, 152
Bpu10I CCTNAGC 1 cut(s) 452
BpuEI CTTGAG 1 cut(s) 629
BsaHI GRCGYC 1 cut(s) 22
BsaJI CCNNGG 1 cut(s) 44
BsaWI WCCGGW 2 cut(s) 394, 499
Bsc4I CCNNNNNNNGG 2 cut(s) 119, 613
Bse118I RCCGGY 2 cut(s) 222, 239
Bse1I ACTGG 1 cut(s) 542
Bse3DI GCAATG 1 cut(s) 715
BseAI TCCGGA 1 cut(s) 499
BseBI CCWGG 1 cut(s) 744
BseDI CCNNGG 1 cut(s) 44
BseGI GGATG 2 cut(s) 140, 146
BseLI CCNNNNNNNGG 2 cut(s) 119, 613
BseMI GCAATG 1 cut(s) 715
BseNI ACTGG 1 cut(s) 542
BseRI GAGGAG 1 cut(s) 626
BseXI GCAGC 2 cut(s) 361, 389
BseYI CCCAGC 1 cut(s) 164
Bsh1236I CGCG 1 cut(s) 726
Bsh1285I CGRYCG 1 cut(s) 730
BshFI GGCC 2 cut(s) 239, 280
BshNI GGYRCC 1 cut(s) 211
BsiEI CGRYCG 1 cut(s) 730
BsiSI CCGG 4 cut(s) 223, 240, 395, 500
BslFI GGGAC 1 cut(s) 9
BslI CCNNNNNNNGG 2 cut(s) 119, 613
BsmFI GGGAC 1 cut(s) 9
BsmI GAATGC 1 cut(s) 663
BsnI GGCC 2 cut(s) 239, 280
Bsp13I TCCGGA 1 cut(s) 499
Bsp1407I TGTACA 1 cut(s) 248
Bsp143I GATC 3 cut(s) 616, 639, 727
Bsp68I TCGCGA 1 cut(s) 726
BspANI GGCC 2 cut(s) 239, 280
BspEI TCCGGA 1 cut(s) 499
BspFNI CGCG 1 cut(s) 726
BspLI GGNNCC 3 cut(s) 213, 393, 618
BspMAI CTGCAG 1 cut(s) 379
BspPI GGATC 2 cut(s) 611, 624
BspT107I GGYRCC 1 cut(s) 211
BsrDI GCAATG 1 cut(s) 715
BsrFI RCCGGY 2 cut(s) 222, 239
BsrGI TGTACA 1 cut(s) 248
BsrI ACTGG 1 cut(s) 542
BssAI RCCGGY 2 cut(s) 222, 239
BssECI CCNNGG 1 cut(s) 44
BssMI GATC 3 cut(s) 616, 639, 727
BssNI GRCGYC 1 cut(s) 22
BssT1I CCWWGG 1 cut(s) 44
Bst2UI CCWGG 1 cut(s) 744
Bst4CI ACNGT 3 cut(s) 63, 230, 253
Bst6I CTCTTC 1 cut(s) 211
BstACI GRCGYC 1 cut(s) 22
BstAUI TGTACA 1 cut(s) 248
BstC8I GCNNGC 4 cut(s) 97, 224, 241, 329
BstDEI CTNAG 2 cut(s) 6, 452
BstEII GGTNACC 1 cut(s) 122
BstENI CCTNNNNNAGG 1 cut(s) 611
BstF5I GGATG 2 cut(s) 140, 146
BstFNI CGCG 1 cut(s) 726
BstKTI GATC 3 cut(s) 619, 642, 730
BstMBI GATC 3 cut(s) 616, 639, 727
BstMCI CGRYCG 1 cut(s) 730
BstMWI GCNNNNNNNGC 1 cut(s) 209
BstNI CCWGG 1 cut(s) 744
BstPI GGTNACC 1 cut(s) 122
BstSCI CCNGG 1 cut(s) 742
BstSFI CTRYAG 2 cut(s) 375, 457
BstUI CGCG 1 cut(s) 726
BstV1I GCAGC 2 cut(s) 361, 389
BstV2I GAAGAC 1 cut(s) 324
BstX2I RGATCY 2 cut(s) 616, 639
BstYI RGATCY 2 cut(s) 616, 639
BsuRI GGCC 2 cut(s) 239, 280
BtsCI GGATG 2 cut(s) 140, 146
BtsIMutI CAGTG 2 cut(s) 226, 258
BtuMI TCGCGA 1 cut(s) 726
Cac8I GCNNGC 4 cut(s) 97, 224, 241, 329
Cfr10I RCCGGY 2 cut(s) 222, 239
CseI GACGC 1 cut(s) 11
CsiI ACCWGGT 1 cut(s) 742
Csp6I GTAC 2 cut(s) 249, 732
CviAII CATG 3 cut(s) 133, 294, 489
CviQI GTAC 2 cut(s) 249, 732
DdeI CTNAG 2 cut(s) 6, 452
DpnI GATC 3 cut(s) 618, 641, 729
DpnII GATC 3 cut(s) 616, 639, 727
EaeI YGGCCR 1 cut(s) 237
Eam1104I CTCTTC 1 cut(s) 211
EarI CTCTTC 1 cut(s) 211
Eco130I CCWWGG 1 cut(s) 44
Eco91I GGTNACC 1 cut(s) 122
EcoNI CCTNNNNNAGG 1 cut(s) 611
EcoO65I GGTNACC 1 cut(s) 122
EcoRII CCWGG 1 cut(s) 742
EcoT14I CCWWGG 1 cut(s) 44
ErhI CCWWGG 1 cut(s) 44
FaeI CATG 3 cut(s) 136, 297, 492
FaqI GGGAC 1 cut(s) 9
FatI CATG 3 cut(s) 132, 293, 488
Fnu4HI GCNGC 2 cut(s) 375, 378
FokI GGATG 2 cut(s) 127, 133
Fsp4HI GCNGC 2 cut(s) 375, 378
FspBI CTAG 4 cut(s) 81, 90, 701, 751
GluI GCNGC 2 cut(s) 375, 378
GsaI CCCAGC 1 cut(s) 168
HaeIII GGCC 2 cut(s) 239, 280
HapII CCGG 4 cut(s) 223, 240, 395, 500
HgaI GACGC 1 cut(s) 11
Hin1I GRCGYC 1 cut(s) 22
Hin1II CATG 3 cut(s) 136, 297, 492
HincII GTYRAC 1 cut(s) 51
HindII GTYRAC 1 cut(s) 51
HindIII AAGCTT 1 cut(s) 97
HinfI GANTC 9 cut(s) 40, 109, 129, 176, 290, 298, 496, 522, 557
HpaII CCGG 4 cut(s) 223, 240, 395, 500
HphI GGTGA 2 cut(s) 134, 545
Hpy166II GTNNAC 3 cut(s) 51, 249, 510
Hpy188I TCNGA 1 cut(s) 7
Hpy188III TCNNGA 6 cut(s) 26, 106, 187, 500, 668, 725
Hpy8I GTNNAC 3 cut(s) 51, 249, 510
HpyAV CCTTC 2 cut(s) 23, 674
HpyCH4III ACNGT 3 cut(s) 63, 230, 253
HpyCH4IV ACGT 1 cut(s) 528
HpyCH4V TGCA 5 cut(s) 70, 95, 362, 377, 708
HpyF10VI GCNNNNNNNGC 1 cut(s) 209
HpyF3I CTNAG 2 cut(s) 6, 452
HpySE526I ACGT 1 cut(s) 528
Hsp92I GRCGYC 1 cut(s) 22
Hsp92II CATG 3 cut(s) 136, 297, 492
Kpn2I TCCGGA 1 cut(s) 499
KroI GCCGGC 2 cut(s) 222, 239
KroNI GCCGGC 2 cut(s) 224, 241
Kzo9I GATC 3 cut(s) 616, 639, 727
LmnI GCTCC 1 cut(s) 141
Lsp1109I GCAGC 2 cut(s) 361, 389
LweI GCATC 2 cut(s) 349, 427
MabI ACCWGGT 1 cut(s) 742
MaeI CTAG 4 cut(s) 81, 90, 701, 751
MaeII ACGT 1 cut(s) 528
MaeIII GTNAC 3 cut(s) 122, 260, 533
MalI GATC 3 cut(s) 618, 641, 729
MboI GATC 3 cut(s) 616, 639, 727
MboII GAAGA 7 cut(s) 94, 175, 198, 329, 446, 552, 649
MflI RGATCY 2 cut(s) 616, 639
MluCI AATT 4 cut(s) 153, 354, 365, 655
MlyI GAGTC 4 cut(s) 138, 292, 490, 516
MnlI CCTC 5 cut(s) 87, 214, 498, 604, 607
MroI TCCGGA 1 cut(s) 499
MroNI GCCGGC 2 cut(s) 222, 239
MroXI GAANNNNTTC 1 cut(s) 684
MseI TTAA 1 cut(s) 714
MslI CAYNNNNRTG 1 cut(s) 531
MspI CCGG 4 cut(s) 223, 240, 395, 500
MspR9I CCNGG 1 cut(s) 744
Mva1269I GAATGC 1 cut(s) 663
MvaI CCWGG 1 cut(s) 744
MvnI CGCG 1 cut(s) 726
MwoI GCNNNNNNNGC 1 cut(s) 209
NaeI GCCGGC 2 cut(s) 224, 241
NdeII GATC 3 cut(s) 616, 639, 727
NgoMIV GCCGGC 2 cut(s) 222, 239
NlaIII CATG 3 cut(s) 136, 297, 492
NlaIV GGNNCC 3 cut(s) 213, 393, 618
NmuCI GTSAC 3 cut(s) 122, 260, 533
NruI TCGCGA 1 cut(s) 726
OliI CACNNNNGTG 1 cut(s) 531
PctI GAATGC 1 cut(s) 663
PdiI GCCGGC 2 cut(s) 224, 241
PdmI GAANNNNTTC 1 cut(s) 684
PfeI GAWTC 5 cut(s) 40, 109, 176, 290, 557
PflFI GACNNNGTC 1 cut(s) 128
PkrI GCNGC 2 cut(s) 376, 379
Ple19I CGATCG 1 cut(s) 730
PleI GAGTC 4 cut(s) 137, 292, 490, 516
PpsI GAGTC 4 cut(s) 137, 292, 490, 516
Psp6I CCWGG 1 cut(s) 742
PspEI GGTNACC 1 cut(s) 122
PspFI CCCAGC 1 cut(s) 164
PspGI CCWGG 1 cut(s) 742
PspN4I GGNNCC 3 cut(s) 213, 393, 618
PstI CTGCAG 1 cut(s) 379
PsuI RGATCY 2 cut(s) 616, 639
PsyI GACNNNGTC 1 cut(s) 128
PvuI CGATCG 1 cut(s) 730
RruI TCGCGA 1 cut(s) 726
RsaI GTAC 2 cut(s) 250, 733
RsaNI GTAC 2 cut(s) 249, 732
RseI CAYNNNNRTG 1 cut(s) 531
SaqAI TTAA 1 cut(s) 714
SatI GCNGC 2 cut(s) 375, 378
Sau3AI GATC 3 cut(s) 616, 639, 727
SchI GAGTC 4 cut(s) 138, 292, 490, 516
ScrFI CCNGG 1 cut(s) 744
SexAI ACCWGGT 1 cut(s) 742
SfaNI GCATC 2 cut(s) 349, 427
SfcI CTRYAG 2 cut(s) 375, 457
SmiMI CAYNNNNRTG 1 cut(s) 531
SmlI CTYRAG 1 cut(s) 608
SmoI CTYRAG 1 cut(s) 608
Sse9I AATT 4 cut(s) 153, 354, 365, 655
SspMI CTAG 4 cut(s) 81, 90, 701, 751
StyD4I CCNGG 1 cut(s) 742
StyI CCWWGG 1 cut(s) 44
TaaI ACNGT 3 cut(s) 63, 230, 253
TaiI ACGT 1 cut(s) 531
TaqI TCGA 2 cut(s) 12, 688
TaqII GACCGA 1 cut(s) 141
TasI AATT 4 cut(s) 153, 354, 365, 655
TatI WGTACW 1 cut(s) 248
TfiI GAWTC 5 cut(s) 40, 109, 176, 290, 557
Tru1I TTAA 1 cut(s) 714
Tru9I TTAA 1 cut(s) 714
TscAI CASTG 2 cut(s) 233, 258
TseFI GTSAC 3 cut(s) 122, 260, 533
TseI GCWGC 2 cut(s) 374, 377
Tsp45I GTSAC 3 cut(s) 122, 260, 533
TspDTI ATGAA 3 cut(s) 303, 477, 552
TspRI CASTG 2 cut(s) 233, 258
Tth111I GACNNNGTC 1 cut(s) 128
XagI CCTNNNNNAGG 1 cut(s) 611
XcmI CCANNNNNNNNNTGG 1 cut(s) 627
XmnI GAANNNNTTC 1 cut(s) 684
XspI CTAG 4 cut(s) 81, 90, 701, 751
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.