RLG00000023538

F-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000142
Physical Location & Seq
Forward (+)
25046009 .. 25047137
1129 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023538

Sequence Viewer

Length: 912 bp
ATGAGTTCCAGACGACGCCCAATCGATGACCTCAACAGGTGGTCCAACGATCTTCCTGATGAATTGATTGAAATGATTGTGAAGCGTCTAACCCTAGTCGATTCAATCAGATTCGCTGATGTGTGTCCTTCTTGGAGATGTGTATCATCACAATGGTTTCAACGAGTAACCCGACTTCCATGGCTCTTGAAGTCGATTGAGTTTCTAGACTCAGAAACTGTGAATTATAATCTCTACAGTCCAAGTGAAGACACAGTCTACGACCTCAAGTTTCGAAGAGAAAATAATAAGTTGGATGCTTCACGTAGTCATAAGATACGTTGCTCGGGCTCTATTGATGGCTGGTTGATAATGTCTGAATGGACATCAAAAAAGAATATGATTCACTCTGCTAAGACGTCCATCAATTATTTCTTGAACCCAATGACAGGTGATCGTATTAAGCTTCCCCAGCTGACCGGAAACATCCCACAGAGCTCCTCGGCCTCTTCAGATCCAAGATGTTCTGATTGCATTGTTGCAATTGTAGATAGTGATTTGGTGTTTTGCAGGCCAAGTAGTCATGAATCATGTCCTTGGGAAGGGAAAAAGCTTCATATAATCCACGTTAAATTTCATGAGGATGGCAAGTTATACGTTTTAGAACAGGCTCTTGTGCATCATTTTATACTTGTTGTTCTTGTTCTTGTTTCTGTTCCATTTTTAGATCCGTTAAATCAATGTCAAGGCAAAGGCAGATGTGAGAAAATTATTGCTTATAGGGAAAAGACAATATTAGCTGGAATGCCATCAGAGGATCCGCCGTGCATCATTTATAGACCATCATTTTTCTGGTCCTCCAAAGGTGAGTTTTTTTCTGGTTTGGCGGCGAGAGTGGCCCGGCAGGAAATTTCGTGCGTTAAAGATGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

304

Amino Acids

34.73

Weight (kDa)

8.25

Isoelectric Point (pI)

54.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 17 - 48 3e-06 F-box domain
Beta-prop_KIB1-4 PF03478 78 - 217 1.9e-13 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000142)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13532 FvH4_2g28870 FvH4_3g30930 FvH4_3g37281 FvH4_3g37300 FvH4_3g37301 FvH4_3g37301 FvH4_4g23711 FvH4_5g02330 FvH4_6g16960 FvH4_6g16971 FvH4_6g21291 FvH4_6g21331 FvH4_6g22212 FvH4_6g22332 FvH4_6g36920 FvH4_6g37552 FvH4_6g37591 FvH4_6g39721 FvH4_6g46020 FvH4_6g47001 FvH4_6g47002 FvH4_6g47130 FvH4_6g47140 FvH4_6g47161 FvH4_6g47170 FvH4_6g47190 FvH4_6g49120 FvH4_6g49280 FvH4_6g49281 FvH4_6g49640 FvH4_6g49640
malus_domestica MD03G1085600.v1.1 MD09G1027500.v1.1 MD09G1050100.v1.1
prunus_persica Prupe.1G004300_v2.0.a1 Prupe.1G016300_v2.0.a1 Prupe.1G019300_v2.0.a1 Prupe.3G239100_v2.0.a1 Prupe.3G291200_v2.0.a1
pyrus_communis pycom08g02840 pycom08g02860 pycom08g02870
rosa_chinensis RchiOBHm_Chr2g0153831 RchiOBHm_Chr2g0166171 RchiOBHm_Chr2g0166201 RchiOBHm_Chr3g0476221 RchiOBHm_Chr4g0430971 RchiOBHm_Chr5g0067081 RchiOBHm_Chr7g0197821
rosa_laevigata RLG00000001284 RLG00000006996 RLG00000012710 RLG00000019299 RLG00000020285 RLG00000020444 RLG00000020466 RLG00000020591 RLG00000020665 RLG00000020730 RLG00000020732 RLG00000021449 RLG00000021592 RLG00000021593 RLG00000021594 RLG00000021596 RLG00000021597 RLG00000021801 RLG00000023534 RLG00000023538 RLG00000023693 RLG00000023694 RLG00000023699 RLG00000024196 RLG00000024214 RLG00000024220 RLG00000024244 RLG00000024608 RLG00000024612 RLG00000035157 RLG00000035906
rosa_multiflora Rmu_co8282815.1_g000001 Rmu_co8380495.1_g000001 Rmu_co8381111.1_g000001 Rmu_co8460513.1_g000001 Rmu_co8481947.1_g000001 Rmu_co8487937.1_g000001 Rmu_sc0000151.1_g000017 Rmu_sc0001427.1_g000003 Rmu_sc0001427.1_g000006 Rmu_sc0002611.1_g000008 Rmu_sc0003887.1_g000018 Rmu_sc0003887.1_g000019 Rmu_sc0003887.1_g000021 Rmu_sc0004119.1_g000004 Rmu_sc0004329.1_g000003 Rmu_sc0004485.1_g000024 Rmu_sc0005290.1_g000001 Rmu_sc0005609.1_g000006 Rmu_sc0006187.1_g000018 Rmu_sc0006218.1_g000032 Rmu_sc0006218.1_g000033 Rmu_sc0007150.1_g000003 Rmu_sc0007154.1_g000004 Rmu_sc0007154.1_g000005 Rmu_sc0007154.1_g000007 Rmu_sc0008314.1_g000012 Rmu_sc0010073.1_g000023 Rmu_sc0010073.1_g000025 Rmu_sc0011216.1_g000008 Rmu_sc0012445.1_g000005 Rmu_sc0013571.1_g000002 Rmu_sc0018648.1_g000002 Rmu_sc0020961.1_g000002 Rmu_sc0020961.1_g000003 Rmu_sc0023710.1_g000001 Rmu_sc0031310.1_g000008 Rmu_sc0033940.1_g000001 Rmu_sc0035493.1_g000001 Rmu_sc0039285.1_g000001
rosa_roxburghii Rroxscaffold_1G00014000 Rroxscaffold_1G00014020 Rroxscaffold_2G00082760 Rroxscaffold_2G00085090 Rroxscaffold_2G00085100 Rroxscaffold_2G00085140 Rroxscaffold_2G00086670 Rroxscaffold_2G00086680 Rroxscaffold_2G00098190 Rroxscaffold_2G00099270 Rroxscaffold_3G00227460 Rroxscaffold_3G00258190 Rroxscaffold_3G00259780 Rroxscaffold_6G00402940 Rroxscaffold_6G00410200 Rroxscaffold_6G00410210 Rroxscaffold_7G00184320
rosa_rugosa Rorug02G0416100 Rorug02G0416200 Rorug02G0520900 Rorug02G0521200 Rorug02G0521300 Rorug02G0534600 Rorug03G0116300 Rorug03G0162900 Rorug03G0162900 Rorug04G0241400 Rorug05G0380900 Rorug07G0043800
rosa_samantha Rh1AG115300 Rh2BG483700 Rh2BG509900 Rh2BG515700 Rh2BG515800 Rh2BG586500 Rh2BG586600 Rh2BG586700 Rh2BG598800 Rh2BG598900 Rh2BG599100 Rh2BG618400 Rh2BG630500 Rh2CG457400 Rh2CG484900 Rh3AG165300 Rh3AG212900 Rh3AG213300 Rh3BG145800 Rh3BG146100 Rh3BG235300 Rh3BG246500 Rh3BG247000 Rh3BG247100 Rh3CG240300 Rh3CG240800 Rh3CG240900 Rh3CG259600 Rh3DG147000 Rh3DG184800 Rh3DG184900 Rh3DG185000 Rh3DG239500 Rh3DG240100 Rh3DG240200 Rh3DG255800 Rh5BG458500 Rh5CG480400 Rh7BG170400 Rh7BG407900 Rh7CG176900
rosa_wichuraiana Rw2G038990 Rw2G041550 Rw2G047660 Rw2G048940 Rw4G026370 Rw6G008730 Rw7G014600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 228
AatII GACGTC 1 cut(s) 401
AccI GTMKAC 1 cut(s) 258
AciI CCGC 2 cut(s) 800, 866
AclWI GGATC 4 cut(s) 488, 701, 791, 804
AcsI RAATTY 2 cut(s) 611, 888
AcuI CTGAAG 1 cut(s) 474
AcyI GRCGYC 2 cut(s) 16, 398
AfiI CCNNNNNNNGG 2 cut(s) 428, 581
AgsI TTSAA 5 cut(s) 71, 105, 161, 190, 418
AluBI AGCT 5 cut(s) 445, 454, 477, 592, 779
AluI AGCT 5 cut(s) 445, 454, 477, 592, 779
Alw21I GWGCWC 1 cut(s) 479
AlwI GGATC 4 cut(s) 488, 701, 791, 804
AlwNI CAGNNNCTG 1 cut(s) 218
Ama87I CYCGRG 1 cut(s) 325
AoxI GGCC 3 cut(s) 483, 551, 876
ApoI RAATTY 2 cut(s) 611, 888
AspS9I GGNCC 3 cut(s) 42, 834, 877
AsuC2I CCSGG 1 cut(s) 880
AsuHPI GGTGA 2 cut(s) 443, 857
AsuII TTCGAA 1 cut(s) 274
AvaI CYCGRG 1 cut(s) 325
AvaII GGWCC 2 cut(s) 42, 834
BamHI GGATCC 1 cut(s) 796
BanII GRGCYC 2 cut(s) 332, 479
BarI GAAGNNNNNNTAC 2 cut(s) 159, 191
BbsI GAAGAC 1 cut(s) 255
Bbv12I GWGCWC 1 cut(s) 479
BccI CCATC 6 cut(s) 332, 410, 617, 796, 829, 899
BceAI ACGGC 1 cut(s) 787
BcnI CCSGG 1 cut(s) 880
BfaI CTAG 2 cut(s) 95, 206
BfmI CTRYAG 1 cut(s) 235
BisI GCNGC 1 cut(s) 867
BlsI GCNGC 1 cut(s) 868
Bme1390I CCNGG 1 cut(s) 880
Bme18I GGWCC 2 cut(s) 42, 834
BmeT110I CYCGRG 1 cut(s) 325
BmgT120I GGNCC 3 cut(s) 42, 834, 877
BmiI GGNNCC 1 cut(s) 798
BmrFI CCNGG 1 cut(s) 880
BmsI GCATC 3 cut(s) 286, 667, 816
BpiI GAAGAC 1 cut(s) 255
Bpu14I TTCGAA 1 cut(s) 274
BpuEI CTTGAG 1 cut(s) 251
BpuMI CCSGG 1 cut(s) 880
Bsa29I ATCGAT 1 cut(s) 24
BsaAI YACGTR 1 cut(s) 305
BsaBI GATNNNNATC 1 cut(s) 142
BsaHI GRCGYC 2 cut(s) 16, 398
BsaJI CCNNGG 3 cut(s) 179, 480, 575
BsaWI WCCGGW 1 cut(s) 458
Bsc4I CCNNNNNNNGG 2 cut(s) 428, 581
Bse8I GATNNNNATC 1 cut(s) 142
BseCI ATCGAT 1 cut(s) 24
BseDI CCNNGG 3 cut(s) 179, 480, 575
BseGI GGATG 3 cut(s) 301, 465, 628
BseJI GATNNNNATC 1 cut(s) 142
BseLI CCNNNNNNNGG 2 cut(s) 428, 581
BseMII CTCAG 1 cut(s) 225
BseRI GAGGAG 1 cut(s) 469
BseYI CCCAGC 1 cut(s) 450
BshFI GGCC 3 cut(s) 485, 553, 878
BshVI ATCGAT 1 cut(s) 24
BsiHKAI GWGCWC 1 cut(s) 479
BsiHKCI CYCGRG 1 cut(s) 325
BsiSI CCGG 2 cut(s) 459, 880
BslI CCNNNNNNNGG 2 cut(s) 428, 581
BsmI GAATGC 1 cut(s) 789
BsnI GGCC 3 cut(s) 485, 553, 878
BsoBI CYCGRG 1 cut(s) 325
Bsp119I TTCGAA 1 cut(s) 274
Bsp1286I GDGCHC 2 cut(s) 332, 479
Bsp143I GATC 5 cut(s) 49, 433, 493, 706, 796
Bsp19I CCATGG 1 cut(s) 179
BspACI CCGC 2 cut(s) 800, 866
BspANI GGCC 3 cut(s) 485, 553, 878
BspCNI CTCAG 1 cut(s) 224
BspDI ATCGAT 1 cut(s) 24
BspHI TCATGA 2 cut(s) 562, 616
BspLI GGNNCC 1 cut(s) 798
BspPI GGATC 4 cut(s) 488, 701, 791, 804
BspT104I TTCGAA 1 cut(s) 274
BssECI CCNNGG 3 cut(s) 179, 480, 575
BssMI GATC 5 cut(s) 49, 433, 493, 706, 796
BssNI GRCGYC 2 cut(s) 16, 398
BssT1I CCWWGG 2 cut(s) 179, 575
Bst4CI ACNGT 3 cut(s) 220, 239, 256
Bst6I CTCTTC 2 cut(s) 271, 493
BstACI GRCGYC 2 cut(s) 16, 398
BstBAI YACGTR 1 cut(s) 305
BstBI TTCGAA 1 cut(s) 274
BstC8I GCNNGC 1 cut(s) 551
BstDEI CTNAG 2 cut(s) 211, 393
BstDSI CCRYGG 1 cut(s) 179
BstENI CCTNNNNNAGG 1 cut(s) 579
BstF5I GGATG 3 cut(s) 301, 465, 628
BstKTI GATC 5 cut(s) 52, 436, 496, 709, 799
BstMBI GATC 5 cut(s) 49, 433, 493, 706, 796
BstMWI GCNNNNNNNGC 2 cut(s) 451, 875
BstSCI CCNGG 1 cut(s) 878
BstSFI CTRYAG 1 cut(s) 235
BstV2I GAAGAC 1 cut(s) 255
BstX2I RGATCY 3 cut(s) 493, 706, 796
BstYI RGATCY 3 cut(s) 493, 706, 796
Bsu15I ATCGAT 1 cut(s) 24
BsuRI GGCC 3 cut(s) 485, 553, 878
BsuTUI ATCGAT 1 cut(s) 24
BtgI CCRYGG 1 cut(s) 179
BtsCI GGATG 3 cut(s) 301, 465, 628
Cac8I GCNNGC 1 cut(s) 551
CaiI CAGNNNCTG 1 cut(s) 218
CciI TCATGA 2 cut(s) 562, 616
Cfr13I GGNCC 3 cut(s) 42, 834, 877
ClaI ATCGAT 1 cut(s) 24
CseI GACGC 2 cut(s) 24, 74
CviAII CATG 4 cut(s) 180, 563, 570, 617
DdeI CTNAG 2 cut(s) 211, 393
DpnI GATC 5 cut(s) 51, 435, 495, 708, 798
DpnII GATC 5 cut(s) 49, 433, 493, 706, 796
Eam1104I CTCTTC 2 cut(s) 271, 493
EarI CTCTTC 2 cut(s) 271, 493
EciI GGCGGA 1 cut(s) 789
Ecl136II GAGCTC 1 cut(s) 477
Eco130I CCWWGG 2 cut(s) 179, 575
Eco24I GRGCYC 2 cut(s) 332, 479
Eco47I GGWCC 2 cut(s) 42, 834
Eco53kI GAGCTC 1 cut(s) 477
Eco57I CTGAAG 1 cut(s) 474
Eco88I CYCGRG 1 cut(s) 325
EcoICRI GAGCTC 1 cut(s) 477
EcoNI CCTNNNNNAGG 1 cut(s) 579
EcoT14I CCWWGG 2 cut(s) 179, 575
EcoT38I GRGCYC 2 cut(s) 332, 479
ErhI CCWWGG 2 cut(s) 179, 575
FaeI CATG 4 cut(s) 183, 566, 573, 620
FatI CATG 4 cut(s) 179, 562, 569, 616
FblI GTMKAC 1 cut(s) 258
Fnu4HI GCNGC 1 cut(s) 867
FokI GGATG 3 cut(s) 308, 452, 635
FriOI GRGCYC 2 cut(s) 332, 479
Fsp4HI GCNGC 1 cut(s) 867
FspBI CTAG 2 cut(s) 95, 206
GluI GCNGC 1 cut(s) 867
GsaI CCCAGC 1 cut(s) 454
HaeIII GGCC 3 cut(s) 485, 553, 878
HapII CCGG 2 cut(s) 459, 880
HgaI GACGC 2 cut(s) 24, 74
Hin1I GRCGYC 2 cut(s) 16, 398
Hin1II CATG 4 cut(s) 183, 566, 573, 620
HindIII AAGCTT 2 cut(s) 443, 590
HinfI GANTC 5 cut(s) 101, 111, 209, 382, 566
HpaII CCGG 2 cut(s) 459, 880
HphI GGTGA 2 cut(s) 443, 857
Hpy166II GTNNAC 1 cut(s) 259
Hpy188I TCNGA 6 cut(s) 110, 214, 358, 493, 508, 793
Hpy188III TCNNGA 7 cut(s) 9, 56, 187, 206, 415, 563, 617
Hpy8I GTNNAC 1 cut(s) 259
Hpy99I CGWCG 1 cut(s) 18
HpyAV CCTTC 2 cut(s) 138, 575
HpyCH4III ACNGT 3 cut(s) 220, 239, 256
HpyCH4IV ACGT 5 cut(s) 304, 319, 398, 606, 636
HpyCH4V TGCA 5 cut(s) 513, 521, 549, 658, 807
HpyF10VI GCNNNNNNNGC 2 cut(s) 451, 875
HpyF3I CTNAG 2 cut(s) 211, 393
HpySE526I ACGT 5 cut(s) 304, 319, 398, 606, 636
Hsp92I GRCGYC 2 cut(s) 16, 398
Hsp92II CATG 4 cut(s) 183, 566, 573, 620
Kzo9I GATC 5 cut(s) 49, 433, 493, 706, 796
LmnI GCTCC 1 cut(s) 482
LweI GCATC 3 cut(s) 286, 667, 816
MaeI CTAG 2 cut(s) 95, 206
MaeII ACGT 5 cut(s) 304, 319, 398, 606, 636
MaeIII GTNAC 1 cut(s) 166
MalI GATC 5 cut(s) 51, 435, 495, 708, 798
MboI GATC 5 cut(s) 49, 433, 493, 706, 796
MboII GAAGA 4 cut(s) 44, 260, 288, 480
MfeI CAATTG 1 cut(s) 522
MflI RGATCY 3 cut(s) 493, 706, 796
MhlI GDGCHC 2 cut(s) 332, 479
MluCI AATT 7 cut(s) 62, 223, 406, 522, 611, 747, 888
MlyI GAGTC 1 cut(s) 203
MmeI TCCRAC 2 cut(s) 69, 273
MnlI CCTC 7 cut(s) 41, 275, 490, 496, 613, 787, 847
MseI TTAA 4 cut(s) 441, 609, 713, 900
MslI CAYNNNNRTG 2 cut(s) 151, 621
MspA1I CMGCKG 1 cut(s) 454
MspI CCGG 2 cut(s) 459, 880
MspR9I CCNGG 1 cut(s) 880
MunI CAATTG 1 cut(s) 522
Mva1269I GAATGC 1 cut(s) 789
MwoI GCNNNNNNNGC 2 cut(s) 451, 875
NciI CCSGG 1 cut(s) 880
NcoI CCATGG 1 cut(s) 179
NdeII GATC 5 cut(s) 49, 433, 493, 706, 796
NlaIII CATG 4 cut(s) 183, 566, 573, 620
NlaIV GGNNCC 1 cut(s) 798
NmeAIII GCCGAG 1 cut(s) 461
NspV TTCGAA 1 cut(s) 274
PagI TCATGA 2 cut(s) 562, 616
PcsI WCGNNNNNNNCGW 1 cut(s) 169
PctI GAATGC 1 cut(s) 789
PfeI GAWTC 4 cut(s) 101, 111, 382, 566
PflFI GACNNNGTC 1 cut(s) 254
PkrI GCNGC 1 cut(s) 868
PleI GAGTC 1 cut(s) 203
PpsI GAGTC 1 cut(s) 203
Ppu21I YACGTR 1 cut(s) 305
PsiI TTATAA 1 cut(s) 228
Psp124BI GAGCTC 1 cut(s) 479
PspFI CCCAGC 1 cut(s) 450
PspN4I GGNNCC 1 cut(s) 798
PspPI GGNCC 3 cut(s) 42, 834, 877
PstNI CAGNNNCTG 1 cut(s) 218
PsuI RGATCY 3 cut(s) 493, 706, 796
PsyI GACNNNGTC 1 cut(s) 254
PvuII CAGCTG 1 cut(s) 454
RseI CAYNNNNRTG 2 cut(s) 151, 621
SacI GAGCTC 1 cut(s) 479
SaqAI TTAA 4 cut(s) 441, 609, 713, 900
SatI GCNGC 1 cut(s) 867
Sau3AI GATC 5 cut(s) 49, 433, 493, 706, 796
Sau96I GGNCC 3 cut(s) 42, 834, 877
SchI GAGTC 1 cut(s) 203
ScrFI CCNGG 1 cut(s) 880
SduI GDGCHC 2 cut(s) 332, 479
SfaNI GCATC 3 cut(s) 286, 667, 816
SfcI CTRYAG 1 cut(s) 235
SfuI TTCGAA 1 cut(s) 274
SinI GGWCC 2 cut(s) 42, 834
SmiMI CAYNNNNRTG 2 cut(s) 151, 621
SmlI CTYRAG 1 cut(s) 266
SmoI CTYRAG 1 cut(s) 266
Sse9I AATT 7 cut(s) 62, 223, 406, 522, 611, 747, 888
SsiI CCGC 2 cut(s) 800, 866
SspI AATATT 1 cut(s) 774
SspMI CTAG 2 cut(s) 95, 206
SstI GAGCTC 1 cut(s) 479
StyD4I CCNGG 1 cut(s) 878
StyI CCWWGG 2 cut(s) 179, 575
TaaI ACNGT 3 cut(s) 220, 239, 256
TaiI ACGT 5 cut(s) 307, 322, 401, 609, 639
TaqI TCGA 4 cut(s) 24, 99, 194, 274
TasI AATT 7 cut(s) 62, 223, 406, 522, 611, 747, 888
TauI GCSGC 1 cut(s) 869
TfiI GAWTC 4 cut(s) 101, 111, 382, 566
Tru1I TTAA 4 cut(s) 441, 609, 713, 900
Tru9I TTAA 4 cut(s) 441, 609, 713, 900
TspDTI ATGAA 4 cut(s) 75, 579, 584, 605
TspGWI ACGGA 1 cut(s) 699
Tth111I GACNNNGTC 1 cut(s) 254
VpaK11BI GGWCC 2 cut(s) 42, 834
XagI CCTNNNNNAGG 1 cut(s) 579
XapI RAATTY 2 cut(s) 611, 888
XbaI TCTAGA 1 cut(s) 205
XcmI CCANNNNNNNNNTGG 1 cut(s) 828
XmiI GTMKAC 1 cut(s) 258
XspI CTAG 2 cut(s) 95, 206
ZraI GACGTC 1 cut(s) 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.