Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000142

Physical Location & Seq

Genomic Coordinates Forward (+)

67298472 .. 67300401

Gene Structure 1930 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020665

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGCTCCCTCCAAATTCCACACTCGAGTGCTCGTACAAGACGAAAGCAGTAGCCTCTTCAGTACCAACAATAACAAGGTTGCAGCTGCCACGGCCGGGGTGTTATGTGTCTTGCCTTCACTTTGAAAAAGAAGGTGGTTTGGCTTTTTGTGCGCCCGCTGATAAATCATGGACCTTCAGTGAGGCCAAGGCGGATCTAGAACTTGGAGATATAGAAATAATTGATGGGAAATTATATGCTGTATGTAGACACCCATTAGAGGTTTTAATGTTGTTTGACATCCAATTAGATTCCAGTGGTGGTGGACTTCATACCTACACCACTGAAAAGATTATTACTCTTCACCCCAATGTCGAGAGAATAGTTGAATACAGAGACATTTGTTTGTGGTCTGGAGTTGAAAACAGATACTACTGTCAGTGTTGTTACCTAGCAAAAGGTTCTGAATCAAAAGACTTGTTTCTGATTTTGCATAAGGGTGATTATATTTGTGGCAAGACCATAGGATTTCAAGTGTTGAAGTTGGAGAATAATGTTACTACTGGTCCTCAGTGGGTAGAGATTGTTGACCTTGGCGATCAGCATCGACACCGGAAGATCGCAGCTCCATTTTCCCTACATCGTCTTCTCAACACGATCACTGACACCTTAGATCTTGTCGTCAACACCCAAACCCCCTACAGAGGAAGGCGCACTCTGATAGATCAGTACTACGAAATCCCAAAAGATTTCATCGTTGCTCTCTCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000463 GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0010468 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0022613 GO:0030684 GO:0030686 GO:0031323 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044087 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0070545 GO:0071704 GO:0071840 GO:0080090 GO:0090069 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904 GO:2000232

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT_2 Pescadillo_N

Protein Analysis

251

Amino Acids

28.22

Weight (kDa)

6.06

Isoelectric Point (pI)

29.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	14 - 194	6.6e-12	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000142)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13532 FvH4_2g28870 FvH4_3g30930 FvH4_3g37281 FvH4_3g37300 FvH4_3g37301 FvH4_3g37301 FvH4_4g23711 FvH4_5g02330 FvH4_6g16960 FvH4_6g16971 FvH4_6g21291 FvH4_6g21331 FvH4_6g22212 FvH4_6g22332 FvH4_6g36920 FvH4_6g37552 FvH4_6g37591 FvH4_6g39721 FvH4_6g46020 FvH4_6g47001 FvH4_6g47002 FvH4_6g47130 FvH4_6g47140 FvH4_6g47161 FvH4_6g47170 FvH4_6g47190 FvH4_6g49120 FvH4_6g49280 FvH4_6g49281 FvH4_6g49640 FvH4_6g49640
malus_domestica	MD03G1085600.v1.1 MD09G1027500.v1.1 MD09G1050100.v1.1
prunus_persica	Prupe.1G004300_v2.0.a1 Prupe.1G016300_v2.0.a1 Prupe.1G019300_v2.0.a1 Prupe.3G239100_v2.0.a1 Prupe.3G291200_v2.0.a1
pyrus_communis	pycom08g02840 pycom08g02860 pycom08g02870
rosa_chinensis	RchiOBHm_Chr2g0153831 RchiOBHm_Chr2g0166171 RchiOBHm_Chr2g0166201 RchiOBHm_Chr3g0476221 RchiOBHm_Chr4g0430971 RchiOBHm_Chr5g0067081 RchiOBHm_Chr7g0197821
rosa_laevigata	RLG00000001284 RLG00000006996 RLG00000012710 RLG00000019299 RLG00000020285 RLG00000020444 RLG00000020466 RLG00000020591 RLG00000020665 RLG00000020730 RLG00000020732 RLG00000021449 RLG00000021592 RLG00000021593 RLG00000021594 RLG00000021596 RLG00000021597 RLG00000021801 RLG00000023534 RLG00000023538 RLG00000023693 RLG00000023694 RLG00000023699 RLG00000024196 RLG00000024214 RLG00000024220 RLG00000024244 RLG00000024608 RLG00000024612 RLG00000035157 RLG00000035906
rosa_multiflora	Rmu_co8282815.1_g000001 Rmu_co8380495.1_g000001 Rmu_co8381111.1_g000001 Rmu_co8460513.1_g000001 Rmu_co8481947.1_g000001 Rmu_co8487937.1_g000001 Rmu_sc0000151.1_g000017 Rmu_sc0001427.1_g000003 Rmu_sc0001427.1_g000006 Rmu_sc0002611.1_g000008 Rmu_sc0003887.1_g000018 Rmu_sc0003887.1_g000019 Rmu_sc0003887.1_g000021 Rmu_sc0004119.1_g000004 Rmu_sc0004329.1_g000003 Rmu_sc0004485.1_g000024 Rmu_sc0005290.1_g000001 Rmu_sc0005609.1_g000006 Rmu_sc0006187.1_g000018 Rmu_sc0006218.1_g000032 Rmu_sc0006218.1_g000033 Rmu_sc0007150.1_g000003 Rmu_sc0007154.1_g000004 Rmu_sc0007154.1_g000005 Rmu_sc0007154.1_g000007 Rmu_sc0008314.1_g000012 Rmu_sc0010073.1_g000023 Rmu_sc0010073.1_g000025 Rmu_sc0011216.1_g000008 Rmu_sc0012445.1_g000005 Rmu_sc0013571.1_g000002 Rmu_sc0018648.1_g000002 Rmu_sc0020961.1_g000002 Rmu_sc0020961.1_g000003 Rmu_sc0023710.1_g000001 Rmu_sc0031310.1_g000008 Rmu_sc0033940.1_g000001 Rmu_sc0035493.1_g000001 Rmu_sc0039285.1_g000001
rosa_roxburghii	Rroxscaffold_1G00014000 Rroxscaffold_1G00014020 Rroxscaffold_2G00082760 Rroxscaffold_2G00085090 Rroxscaffold_2G00085100 Rroxscaffold_2G00085140 Rroxscaffold_2G00086670 Rroxscaffold_2G00086680 Rroxscaffold_2G00098190 Rroxscaffold_2G00099270 Rroxscaffold_3G00227460 Rroxscaffold_3G00258190 Rroxscaffold_3G00259780 Rroxscaffold_6G00402940 Rroxscaffold_6G00410200 Rroxscaffold_6G00410210 Rroxscaffold_7G00184320
rosa_rugosa	Rorug02G0416100 Rorug02G0416200 Rorug02G0520900 Rorug02G0521200 Rorug02G0521300 Rorug02G0534600 Rorug03G0116300 Rorug03G0162900 Rorug03G0162900 Rorug04G0241400 Rorug05G0380900 Rorug07G0043800
rosa_samantha	Rh1AG115300 Rh2BG483700 Rh2BG509900 Rh2BG515700 Rh2BG515800 Rh2BG586500 Rh2BG586600 Rh2BG586700 Rh2BG598800 Rh2BG598900 Rh2BG599100 Rh2BG618400 Rh2BG630500 Rh2CG457400 Rh2CG484900 Rh3AG165300 Rh3AG212900 Rh3AG213300 Rh3BG145800 Rh3BG146100 Rh3BG235300 Rh3BG246500 Rh3BG247000 Rh3BG247100 Rh3CG240300 Rh3CG240800 Rh3CG240900 Rh3CG259600 Rh3DG147000 Rh3DG184800 Rh3DG184900 Rh3DG185000 Rh3DG239500 Rh3DG240100 Rh3DG240200 Rh3DG255800 Rh5BG458500 Rh5CG480400 Rh7BG170400 Rh7BG407900 Rh7CG176900
rosa_wichuraiana	Rw2G038990 Rw2G041550 Rw2G047660 Rw2G048940 Rw4G026370 Rw6G008730 Rw7G014600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	247
AciI	CCGC	2 cut(s)	156, 191
AclWI	GGATC	1 cut(s)	201
AcoI	YGGCCR	1 cut(s)	92
AcsI	RAATTY	1 cut(s)	13
AcuI	CTGAAG	2 cut(s)	42, 160
AfaI	GTAC	3 cut(s)	35, 63, 710
AfiI	CCNNNNNNNGG	3 cut(s)	95, 259, 683
AgsI	TTSAA	5 cut(s)	125, 368, 401, 512, 520
AleI	CACNNNNGTG	1 cut(s)	25
AluBI	AGCT	2 cut(s)	85, 605
AluI	AGCT	2 cut(s)	85, 605
Alw21I	GWGCWC	1 cut(s)	32
Alw26I	GTCTC	1 cut(s)	369
AlwI	GGATC	1 cut(s)	201
Ama87I	CYCGRG	1 cut(s)	23
AoxI	GGCC	2 cut(s)	92, 183
ApeKI	GCWGC	3 cut(s)	82, 85, 602
ApoI	RAATTY	1 cut(s)	13
AspLEI	GCGC	2 cut(s)	154, 693
AspS9I	GGNCC	2 cut(s)	171, 545
AsuC2I	CCSGG	1 cut(s)	96
AsuHPI	GGTGA	2 cut(s)	335, 491
AvaI	CYCGRG	1 cut(s)	23
AvaII	GGWCC	2 cut(s)	171, 545
BaeI	ACNNNNGTAYC	2 cut(s)	400, 433
BbsI	GAAGAC	1 cut(s)	617
Bbv12I	GWGCWC	1 cut(s)	32
BbvI	GCAGC	3 cut(s)	72, 94, 614
BccI	CCATC	1 cut(s)	218
BceAI	ACGGC	1 cut(s)	107
BcnI	CCSGG	1 cut(s)	96
BcoDI	GTCTC	1 cut(s)	369
BfaI	CTAG	2 cut(s)	197, 431
BfmI	CTRYAG	1 cut(s)	679
BglII	AGATCT	1 cut(s)	652
BisI	GCNGC	3 cut(s)	83, 86, 603
BlsI	GCNGC	3 cut(s)	84, 87, 604
BmcAI	AGTACT	1 cut(s)	710
Bme1390I	CCNGG	1 cut(s)	96
Bme18I	GGWCC	2 cut(s)	171, 545
BmeT110I	CYCGRG	1 cut(s)	23
BmgT120I	GGNCC	2 cut(s)	171, 545
BmrFI	CCNGG	1 cut(s)	96
BmsI	GCATC	1 cut(s)	592
BpiI	GAAGAC	1 cut(s)	617
BpmI	CTGGAG	1 cut(s)	414
BpuMI	CCSGG	1 cut(s)	96
BsaBI	GATNNNNATC	1 cut(s)	582
BsaJI	CCNNGG	4 cut(s)	89, 95, 186, 571
BsaWI	WCCGGW	1 cut(s)	591
Bsc4I	CCNNNNNNNGG	3 cut(s)	95, 259, 683
Bse1I	ACTGG	2 cut(s)	294, 547
Bse8I	GATNNNNATC	1 cut(s)	582
BseDI	CCNNGG	4 cut(s)	89, 95, 186, 571
BseGI	GGATG	1 cut(s)	279
BseJI	GATNNNNATC	1 cut(s)	582
BseLI	CCNNNNNNNGG	3 cut(s)	95, 259, 683
BseMII	CTCAG	1 cut(s)	563
BseNI	ACTGG	2 cut(s)	294, 547
BseX3I	CGGCCG	1 cut(s)	92
BseXI	GCAGC	3 cut(s)	72, 94, 614
Bsh1285I	CGRYCG	1 cut(s)	95
BshFI	GGCC	2 cut(s)	94, 185
BsiEI	CGRYCG	1 cut(s)	95
BsiHKAI	GWGCWC	1 cut(s)	32
BsiHKCI	CYCGRG	1 cut(s)	23
BsiSI	CCGG	2 cut(s)	95, 592
BslI	CCNNNNNNNGG	3 cut(s)	95, 259, 683
BsmAI	GTCTC	1 cut(s)	369
BsnI	GGCC	2 cut(s)	94, 185
BsoBI	CYCGRG	1 cut(s)	23
Bsp1286I	GDGCHC	1 cut(s)	32
Bsp143I	GATC	6 cut(s)	193, 577, 597, 636, 652, 703
BspACI	CCGC	2 cut(s)	156, 191
BspANI	GGCC	2 cut(s)	94, 185
BspCNI	CTCAG	1 cut(s)	562
BspPI	GGATC	1 cut(s)	201
BsrI	ACTGG	2 cut(s)	294, 547
BssECI	CCNNGG	4 cut(s)	89, 95, 186, 571
BssMI	GATC	6 cut(s)	193, 577, 597, 636, 652, 703
BssT1I	CCWWGG	2 cut(s)	186, 571
Bst4CI	ACNGT	1 cut(s)	416
Bst6I	CTCTTC	2 cut(s)	61, 345
BstC8I	GCNNGC	1 cut(s)	156
BstDEI	CTNAG	2 cut(s)	549, 649
BstDSI	CCRYGG	1 cut(s)	89
BstF5I	GGATG	1 cut(s)	279
BstHHI	GCGC	2 cut(s)	154, 693
BstKTI	GATC	6 cut(s)	196, 580, 600, 639, 655, 706
BstMAI	GTCTC	1 cut(s)	369
BstMBI	GATC	6 cut(s)	193, 577, 597, 636, 652, 703
BstMCI	CGRYCG	1 cut(s)	95
BstMWI	GCNNNNNNNGC	3 cut(s)	91, 149, 746
BstSCI	CCNGG	1 cut(s)	94
BstSFI	CTRYAG	1 cut(s)	679
BstV1I	GCAGC	3 cut(s)	72, 94, 614
BstV2I	GAAGAC	1 cut(s)	617
BstX2I	RGATCY	2 cut(s)	193, 652
BstYI	RGATCY	2 cut(s)	193, 652
BstZI	CGGCCG	1 cut(s)	92
BsuRI	GGCC	2 cut(s)	94, 185
BtgI	CCRYGG	1 cut(s)	89
BtsCI	GGATG	1 cut(s)	279
BtsIMutI	CAGTG	6 cut(s)	184, 301, 321, 425, 557, 639
Cac8I	GCNNGC	1 cut(s)	156
CfoI	GCGC	2 cut(s)	154, 693
Cfr13I	GGNCC	2 cut(s)	171, 545
Csp6I	GTAC	3 cut(s)	34, 62, 709
CviAII	CATG	1 cut(s)	168
CviJI	RGCY	6 cut(s)	53, 85, 94, 143, 185, 605
CviKI_1	RGCY	6 cut(s)	53, 85, 94, 143, 185, 605
CviQI	GTAC	3 cut(s)	34, 62, 709
DdeI	CTNAG	2 cut(s)	549, 649
DpnI	GATC	6 cut(s)	195, 579, 599, 638, 654, 705
DpnII	GATC	6 cut(s)	193, 577, 597, 636, 652, 703
EaeI	YGGCCR	1 cut(s)	92
EagI	CGGCCG	1 cut(s)	92
Eam1104I	CTCTTC	2 cut(s)	61, 345
EarI	CTCTTC	2 cut(s)	61, 345
EciI	GGCGGA	1 cut(s)	206
EclXI	CGGCCG	1 cut(s)	92
Eco130I	CCWWGG	2 cut(s)	186, 571
Eco47I	GGWCC	2 cut(s)	171, 545
Eco52I	CGGCCG	1 cut(s)	92
Eco57I	CTGAAG	2 cut(s)	42, 160
Eco88I	CYCGRG	1 cut(s)	23
EcoT14I	CCWWGG	2 cut(s)	186, 571
ErhI	CCWWGG	2 cut(s)	186, 571
FaeI	CATG	1 cut(s)	171
FatI	CATG	1 cut(s)	167
FauI	CCCGC	1 cut(s)	163
FblI	GTMKAC	1 cut(s)	247
Fnu4HI	GCNGC	3 cut(s)	83, 86, 603
FokI	GGATG	1 cut(s)	266
Fsp4HI	GCNGC	3 cut(s)	83, 86, 603
FspBI	CTAG	2 cut(s)	197, 431
GlaI	GCGC	2 cut(s)	153, 692
GluI	GCNGC	3 cut(s)	83, 86, 603
GsuI	CTGGAG	1 cut(s)	414
HaeIII	GGCC	2 cut(s)	94, 185
HapII	CCGG	2 cut(s)	95, 592
HhaI	GCGC	2 cut(s)	154, 693
Hin1II	CATG	1 cut(s)	171
Hin6I	GCGC	2 cut(s)	152, 691
HinP1I	GCGC	2 cut(s)	152, 691
HincII	GTYRAC	2 cut(s)	568, 664
HindII	GTYRAC	2 cut(s)	568, 664
HinfI	GANTC	2 cut(s)	290, 446
HpaII	CCGG	2 cut(s)	95, 592
HphI	GGTGA	2 cut(s)	335, 491
Hpy166II	GTNNAC	4 cut(s)	248, 305, 568, 664
Hpy188I	TCNGA	3 cut(s)	445, 465, 699
Hpy188III	TCNNGA	3 cut(s)	197, 355, 393
Hpy8I	GTNNAC	4 cut(s)	248, 305, 568, 664
HpyAV	CCTTC	4 cut(s)	125, 125, 184, 681
HpyCH4III	ACNGT	1 cut(s)	416
HpyCH4V	TGCA	2 cut(s)	82, 472
HpyF10VI	GCNNNNNNNGC	3 cut(s)	91, 149, 746
HpyF3I	CTNAG	2 cut(s)	549, 649
Hsp92II	CATG	1 cut(s)	171
HspAI	GCGC	2 cut(s)	152, 691
Kzo9I	GATC	6 cut(s)	193, 577, 597, 636, 652, 703
LmnI	GCTCC	2 cut(s)	9, 610
LpnPI	CCDG	5 cut(s)	108, 307, 378, 528, 605
Lsp1109I	GCAGC	3 cut(s)	72, 94, 614
LweI	GCATC	1 cut(s)	592
MaeI	CTAG	2 cut(s)	197, 431
MaeIII	GTNAC	2 cut(s)	425, 535
MalI	GATC	6 cut(s)	195, 579, 599, 638, 654, 705
MboI	GATC	6 cut(s)	193, 577, 597, 636, 652, 703
MboII	GAAGA	4 cut(s)	48, 332, 607, 617
MflI	RGATCY	2 cut(s)	193, 652
MhlI	GDGCHC	1 cut(s)	32
MluCI	AATT	4 cut(s)	13, 219, 230, 284
MmeI	TCCRAC	1 cut(s)	504
MnlI	CCTC	6 cut(s)	18, 64, 175, 253, 558, 677
MseI	TTAA	1 cut(s)	266
MslI	CAYNNNNRTG	3 cut(s)	25, 348, 477
MspA1I	CMGCKG	2 cut(s)	85, 158
MspI	CCGG	2 cut(s)	95, 592
MspR9I	CCNGG	1 cut(s)	96
MwoI	GCNNNNNNNGC	3 cut(s)	91, 149, 746
NciI	CCSGG	1 cut(s)	96
NdeII	GATC	6 cut(s)	193, 577, 597, 636, 652, 703
NlaIII	CATG	1 cut(s)	171
OliI	CACNNNNGTG	1 cut(s)	25
PaeR7I	CTCGAG	1 cut(s)	23
PcsI	WCGNNNNNNNCGW	1 cut(s)	38
PfeI	GAWTC	2 cut(s)	290, 446
PkrI	GCNGC	3 cut(s)	84, 87, 604
PspPI	GGNCC	2 cut(s)	171, 545
PspXI	VCTCGAGB	1 cut(s)	23
PsuI	RGATCY	2 cut(s)	193, 652
PvuII	CAGCTG	1 cut(s)	85
RsaI	GTAC	3 cut(s)	35, 63, 710
RsaNI	GTAC	3 cut(s)	34, 62, 709
RseI	CAYNNNNRTG	3 cut(s)	25, 348, 477
SaqAI	TTAA	1 cut(s)	266
SatI	GCNGC	3 cut(s)	83, 86, 603
Sau3AI	GATC	6 cut(s)	193, 577, 597, 636, 652, 703
Sau96I	GGNCC	2 cut(s)	171, 545
ScaI	AGTACT	1 cut(s)	710
ScrFI	CCNGG	1 cut(s)	96
SduI	GDGCHC	1 cut(s)	32
SfaNI	GCATC	1 cut(s)	592
SfcI	CTRYAG	1 cut(s)	679
Sfr274I	CTCGAG	1 cut(s)	23
SinI	GGWCC	2 cut(s)	171, 545
SlaI	CTCGAG	1 cut(s)	23
SmiMI	CAYNNNNRTG	3 cut(s)	25, 348, 477
SmlI	CTYRAG	1 cut(s)	23
SmoI	CTYRAG	1 cut(s)	23
Sse9I	AATT	4 cut(s)	13, 219, 230, 284
SsiI	CCGC	2 cut(s)	156, 191
SspMI	CTAG	2 cut(s)	197, 431
StyD4I	CCNGG	1 cut(s)	94
StyI	CCWWGG	2 cut(s)	186, 571
TaaI	ACNGT	1 cut(s)	416
TaqI	TCGA	3 cut(s)	24, 354, 586
TasI	AATT	4 cut(s)	13, 219, 230, 284
TatI	WGTACW	1 cut(s)	708
TfiI	GAWTC	2 cut(s)	290, 446
Tru1I	TTAA	1 cut(s)	266
Tru9I	TTAA	1 cut(s)	266
TscAI	CASTG	6 cut(s)	184, 301, 328, 425, 557, 646
TseI	GCWGC	3 cut(s)	82, 85, 602
TspDTI	ATGAA	2 cut(s)	299, 721
TspRI	CASTG	6 cut(s)	184, 301, 328, 425, 557, 646
VpaK11BI	GGWCC	2 cut(s)	171, 545
XapI	RAATTY	1 cut(s)	13
XbaI	TCTAGA	1 cut(s)	196
XhoI	CTCGAG	1 cut(s)	23
XmiI	GTMKAC	1 cut(s)	247
XspI	CTAG	2 cut(s)	197, 431
ZrmI	AGTACT	1 cut(s)	710

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.