Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000142

Physical Location & Seq

Genomic Coordinates Reverse (-)

32013934 .. 32014464

Gene Structure 531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g37300.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGTTTCTTGATGTTAGGAGATCAGATGGAGTTGTATACCAGTCAAACATCGAAATTATTTCTCTAGCAAAAGATTCTCTTTCAGAGGACTTGTTTATGATATTCTGCATGACTAACTTTGCTCTGGAGGAGGATCCATTTCCATGGCATGTGATATTTGGTGGTGATTTTATCACTCCACTACAGGTTCAAGCATTTCGAGTGTTCAAGATGGAGTGGAAGGTTAATGGTCCTCAGTGGGTAGAGGTTTTTGACCTCGGTGACCGGATATTATTTGTGGCCTTGGGTGGTACCAAAATGATCTCCACCAGCAGTTGCCTTAACTATAATGGTCTCTATGATAAAGCATTTCAAAAAAACTGCATCTATTTTGCCTACGATACTCCTTGTTTAGCATCTCCATCAGAGGGGGAGAGTTTTGGGGTGTTTTCTTTGACATCTAGGAGGATCAAACATGTCGCCTTCCCCAAGGAACATTCATTTGCCCAATTACATTCTCGACCTGTCTGGTTCACACCAAATCCCTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000463 GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0010468 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0022613 GO:0030684 GO:0030686 GO:0031323 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044087 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0070545 GO:0071704 GO:0071840 GO:0080090 GO:0090069 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904 GO:2000232

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT_2 Pescadillo_N

Protein Analysis

177

Amino Acids

20.23

Weight (kDa)

5.52

Isoelectric Point (pI)

55.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	62 - 143	1e-11	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000142)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13532 FvH4_2g28870 FvH4_3g30930 FvH4_3g37281 FvH4_3g37300 FvH4_3g37301 FvH4_3g37301 FvH4_4g23711 FvH4_5g02330 FvH4_6g16960 FvH4_6g16971 FvH4_6g21291 FvH4_6g21331 FvH4_6g22212 FvH4_6g22332 FvH4_6g36920 FvH4_6g37552 FvH4_6g37591 FvH4_6g39721 FvH4_6g46020 FvH4_6g47001 FvH4_6g47002 FvH4_6g47130 FvH4_6g47140 FvH4_6g47161 FvH4_6g47170 FvH4_6g47190 FvH4_6g49120 FvH4_6g49280 FvH4_6g49281 FvH4_6g49640 FvH4_6g49640
malus_domestica	MD03G1085600.v1.1 MD09G1027500.v1.1 MD09G1050100.v1.1
prunus_persica	Prupe.1G004300_v2.0.a1 Prupe.1G016300_v2.0.a1 Prupe.1G019300_v2.0.a1 Prupe.3G239100_v2.0.a1 Prupe.3G291200_v2.0.a1
pyrus_communis	pycom08g02840 pycom08g02860 pycom08g02870
rosa_chinensis	RchiOBHm_Chr2g0153831 RchiOBHm_Chr2g0166171 RchiOBHm_Chr2g0166201 RchiOBHm_Chr3g0476221 RchiOBHm_Chr4g0430971 RchiOBHm_Chr5g0067081 RchiOBHm_Chr7g0197821
rosa_laevigata	RLG00000001284 RLG00000006996 RLG00000012710 RLG00000019299 RLG00000020285 RLG00000020444 RLG00000020466 RLG00000020591 RLG00000020665 RLG00000020730 RLG00000020732 RLG00000021449 RLG00000021592 RLG00000021593 RLG00000021594 RLG00000021596 RLG00000021597 RLG00000021801 RLG00000023534 RLG00000023538 RLG00000023693 RLG00000023694 RLG00000023699 RLG00000024196 RLG00000024214 RLG00000024220 RLG00000024244 RLG00000024608 RLG00000024612 RLG00000035157 RLG00000035906
rosa_multiflora	Rmu_co8282815.1_g000001 Rmu_co8380495.1_g000001 Rmu_co8381111.1_g000001 Rmu_co8460513.1_g000001 Rmu_co8481947.1_g000001 Rmu_co8487937.1_g000001 Rmu_sc0000151.1_g000017 Rmu_sc0001427.1_g000003 Rmu_sc0001427.1_g000006 Rmu_sc0002611.1_g000008 Rmu_sc0003887.1_g000018 Rmu_sc0003887.1_g000019 Rmu_sc0003887.1_g000021 Rmu_sc0004119.1_g000004 Rmu_sc0004329.1_g000003 Rmu_sc0004485.1_g000024 Rmu_sc0005290.1_g000001 Rmu_sc0005609.1_g000006 Rmu_sc0006187.1_g000018 Rmu_sc0006218.1_g000032 Rmu_sc0006218.1_g000033 Rmu_sc0007150.1_g000003 Rmu_sc0007154.1_g000004 Rmu_sc0007154.1_g000005 Rmu_sc0007154.1_g000007 Rmu_sc0008314.1_g000012 Rmu_sc0010073.1_g000023 Rmu_sc0010073.1_g000025 Rmu_sc0011216.1_g000008 Rmu_sc0012445.1_g000005 Rmu_sc0013571.1_g000002 Rmu_sc0018648.1_g000002 Rmu_sc0020961.1_g000002 Rmu_sc0020961.1_g000003 Rmu_sc0023710.1_g000001 Rmu_sc0031310.1_g000008 Rmu_sc0033940.1_g000001 Rmu_sc0035493.1_g000001 Rmu_sc0039285.1_g000001
rosa_roxburghii	Rroxscaffold_1G00014000 Rroxscaffold_1G00014020 Rroxscaffold_2G00082760 Rroxscaffold_2G00085090 Rroxscaffold_2G00085100 Rroxscaffold_2G00085140 Rroxscaffold_2G00086670 Rroxscaffold_2G00086680 Rroxscaffold_2G00098190 Rroxscaffold_2G00099270 Rroxscaffold_3G00227460 Rroxscaffold_3G00258190 Rroxscaffold_3G00259780 Rroxscaffold_6G00402940 Rroxscaffold_6G00410200 Rroxscaffold_6G00410210 Rroxscaffold_7G00184320
rosa_rugosa	Rorug02G0416100 Rorug02G0416200 Rorug02G0520900 Rorug02G0521200 Rorug02G0521300 Rorug02G0534600 Rorug03G0116300 Rorug03G0162900 Rorug03G0162900 Rorug04G0241400 Rorug05G0380900 Rorug07G0043800
rosa_samantha	Rh1AG115300 Rh2BG483700 Rh2BG509900 Rh2BG515700 Rh2BG515800 Rh2BG586500 Rh2BG586600 Rh2BG586700 Rh2BG598800 Rh2BG598900 Rh2BG599100 Rh2BG618400 Rh2BG630500 Rh2CG457400 Rh2CG484900 Rh3AG165300 Rh3AG212900 Rh3AG213300 Rh3BG145800 Rh3BG146100 Rh3BG235300 Rh3BG246500 Rh3BG247000 Rh3BG247100 Rh3CG240300 Rh3CG240800 Rh3CG240900 Rh3CG259600 Rh3DG147000 Rh3DG184800 Rh3DG184900 Rh3DG185000 Rh3DG239500 Rh3DG240100 Rh3DG240200 Rh3DG255800 Rh5BG458500 Rh5CG480400 Rh7BG170400 Rh7BG407900 Rh7CG176900
rosa_wichuraiana	Rw2G038990 Rw2G041550 Rw2G047660 Rw2G048940 Rw4G026370 Rw6G008730 Rw7G014600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	290
AccB1I	GGYRCC	1 cut(s)	290
AccI	GTMKAC	1 cut(s)	36
AclWI	GGATC	3 cut(s)	128, 141, 455
AfaI	GTAC	1 cut(s)	292
AfiI	CCNNNNNNNGG	1 cut(s)	407
AflIII	ACRYGT	1 cut(s)	454
AgsI	TTSAA	3 cut(s)	191, 208, 353
AjnI	CCWGG	1 cut(s)	524
Alw26I	GTCTC	1 cut(s)	338
AlwI	GGATC	3 cut(s)	128, 141, 455
AoxI	GGCC	1 cut(s)	279
Asp718I	GGTACC	1 cut(s)	290
AspS9I	GGNCC	1 cut(s)	230
AsuHPI	GGTGA	2 cut(s)	176, 272
AvaII	GGWCC	1 cut(s)	230
BamHI	GGATCC	1 cut(s)	133
BanI	GGYRCC	1 cut(s)	290
BccI	CCATC	3 cut(s)	20, 205, 409
BciT130I	CCWGG	1 cut(s)	526
BcoDI	GTCTC	1 cut(s)	338
BfaI	CTAG	2 cut(s)	65, 441
BfmI	CTRYAG	1 cut(s)	182
Bme1390I	CCNGG	1 cut(s)	526
Bme18I	GGWCC	1 cut(s)	230
BmgT120I	GGNCC	1 cut(s)	230
BmiI	GGNNCC	2 cut(s)	135, 292
BmrFI	CCNGG	1 cut(s)	526
BmsI	GCATC	2 cut(s)	372, 404
BpmI	CTGGAG	1 cut(s)	146
BsaI	GGTCTC	1 cut(s)	338
BsaJI	CCNNGG	5 cut(s)	143, 256, 282, 468, 524
BsaWI	WCCGGW	1 cut(s)	264
Bsc4I	CCNNNNNNNGG	1 cut(s)	407
Bse1I	ACTGG	1 cut(s)	40
BseBI	CCWGG	1 cut(s)	526
BseDI	CCNNGG	5 cut(s)	143, 256, 282, 468, 524
BseLI	CCNNNNNNNGG	1 cut(s)	407
BseMII	CTCAG	1 cut(s)	248
BseNI	ACTGG	1 cut(s)	40
BseRI	GAGGAG	1 cut(s)	143
BshFI	GGCC	1 cut(s)	281
BshNI	GGYRCC	1 cut(s)	290
BsiSI	CCGG	1 cut(s)	265
BslI	CCNNNNNNNGG	1 cut(s)	407
BsmAI	GTCTC	1 cut(s)	338
BsnI	GGCC	1 cut(s)	281
Bso31I	GGTCTC	1 cut(s)	338
Bsp143I	GATC	4 cut(s)	20, 133, 300, 447
Bsp19I	CCATGG	1 cut(s)	143
BspANI	GGCC	1 cut(s)	281
BspCNI	CTCAG	1 cut(s)	247
BspLI	GGNNCC	2 cut(s)	135, 292
BspPI	GGATC	3 cut(s)	128, 141, 455
BspT107I	GGYRCC	1 cut(s)	290
BspTNI	GGTCTC	1 cut(s)	338
BsrI	ACTGG	1 cut(s)	40
BssECI	CCNNGG	5 cut(s)	143, 256, 282, 468, 524
BssMI	GATC	4 cut(s)	20, 133, 300, 447
BssNAI	GTATAC	1 cut(s)	37
BssT1I	CCWWGG	3 cut(s)	143, 282, 468
Bst1107I	GTATAC	1 cut(s)	37
Bst2UI	CCWGG	1 cut(s)	526
BstDEI	CTNAG	1 cut(s)	234
BstDSI	CCRYGG	1 cut(s)	143
BstEII	GGTNACC	1 cut(s)	260
BstKTI	GATC	4 cut(s)	23, 136, 303, 450
BstMAI	GTCTC	1 cut(s)	338
BstMBI	GATC	4 cut(s)	20, 133, 300, 447
BstNI	CCWGG	1 cut(s)	526
BstNSI	RCATGY	2 cut(s)	152, 458
BstPI	GGTNACC	1 cut(s)	260
BstSCI	CCNGG	1 cut(s)	524
BstSFI	CTRYAG	1 cut(s)	182
BstX2I	RGATCY	1 cut(s)	133
BstXI	CCANNNNNNTGG	2 cut(s)	144, 525
BstYI	RGATCY	1 cut(s)	133
BstZ17I	GTATAC	1 cut(s)	37
BsuRI	GGCC	1 cut(s)	281
BtgI	CCRYGG	1 cut(s)	143
BtsIMutI	CAGTG	1 cut(s)	242
Cfr13I	GGNCC	1 cut(s)	230
Csp6I	GTAC	1 cut(s)	291
CviAII	CATG	4 cut(s)	109, 144, 149, 455
CviJI	RGCY	1 cut(s)	281
CviKI_1	RGCY	1 cut(s)	281
CviQI	GTAC	1 cut(s)	291
DdeI	CTNAG	1 cut(s)	234
DpnI	GATC	4 cut(s)	22, 135, 302, 449
DpnII	GATC	4 cut(s)	20, 133, 300, 447
Eco130I	CCWWGG	3 cut(s)	143, 282, 468
Eco31I	GGTCTC	1 cut(s)	338
Eco47I	GGWCC	1 cut(s)	230
Eco91I	GGTNACC	1 cut(s)	260
EcoO65I	GGTNACC	1 cut(s)	260
EcoRII	CCWGG	1 cut(s)	524
EcoT14I	CCWWGG	3 cut(s)	143, 282, 468
ErhI	CCWWGG	3 cut(s)	143, 282, 468
FaeI	CATG	4 cut(s)	112, 147, 152, 458
FaiI	YATR	8 cut(s)	37, 98, 110, 145, 150, 327, 339, 456
FalI	AAGNNNNNCTT	2 cut(s)	63, 95
FatI	CATG	4 cut(s)	108, 143, 148, 454
FblI	GTMKAC	1 cut(s)	36
FspBI	CTAG	2 cut(s)	65, 441
GsuI	CTGGAG	1 cut(s)	146
HaeIII	GGCC	1 cut(s)	281
HapII	CCGG	1 cut(s)	265
Hin1II	CATG	4 cut(s)	112, 147, 152, 458
HinfI	GANTC	1 cut(s)	74
HpaII	CCGG	1 cut(s)	265
HphI	GGTGA	2 cut(s)	176, 272
Hpy166II	GTNNAC	2 cut(s)	37, 513
Hpy188I	TCNGA	3 cut(s)	25, 85, 406
Hpy188III	TCNNGA	4 cut(s)	8, 125, 208, 498
Hpy8I	GTNNAC	2 cut(s)	37, 513
HpyAV	CCTTC	2 cut(s)	214, 472
HpyCH4V	TGCA	2 cut(s)	108, 363
HpyF3I	CTNAG	1 cut(s)	234
Hsp92II	CATG	4 cut(s)	112, 147, 152, 458
KpnI	GGTACC	1 cut(s)	294
Kzo9I	GATC	4 cut(s)	20, 133, 300, 447
LpnPI	CCDG	8 cut(s)	53, 110, 170, 278, 322, 493, 511, 516
LweI	GCATC	2 cut(s)	372, 404
MaeI	CTAG	2 cut(s)	65, 441
MaeIII	GTNAC	1 cut(s)	260
MalI	GATC	4 cut(s)	22, 135, 302, 449
MboI	GATC	4 cut(s)	20, 133, 300, 447
MflI	RGATCY	1 cut(s)	133
MluCI	AATT	2 cut(s)	54, 488
MnlI	CCTC	8 cut(s)	79, 121, 124, 238, 243, 266, 400, 438
MseI	TTAA	2 cut(s)	225, 321
MslI	CAYNNNNRTG	1 cut(s)	142
MspI	CCGG	1 cut(s)	265
MspR9I	CCNGG	1 cut(s)	526
MvaI	CCWGG	1 cut(s)	526
NcoI	CCATGG	1 cut(s)	143
NdeII	GATC	4 cut(s)	20, 133, 300, 447
NlaIII	CATG	4 cut(s)	112, 147, 152, 458
NlaIV	GGNNCC	2 cut(s)	135, 292
NmuCI	GTSAC	1 cut(s)	260
NspI	RCATGY	2 cut(s)	152, 458
PciI	ACATGT	1 cut(s)	454
PfeI	GAWTC	1 cut(s)	74
PscI	ACATGT	1 cut(s)	454
Psp6I	CCWGG	1 cut(s)	524
PspEI	GGTNACC	1 cut(s)	260
PspGI	CCWGG	1 cut(s)	524
PspN4I	GGNNCC	2 cut(s)	135, 292
PspPI	GGNCC	1 cut(s)	230
PsuI	RGATCY	1 cut(s)	133
RsaI	GTAC	1 cut(s)	292
RsaNI	GTAC	1 cut(s)	291
RseI	CAYNNNNRTG	1 cut(s)	142
SaqAI	TTAA	2 cut(s)	225, 321
Sau3AI	GATC	4 cut(s)	20, 133, 300, 447
Sau96I	GGNCC	1 cut(s)	230
ScrFI	CCNGG	1 cut(s)	526
SetI	ASST	5 cut(s)	189, 225, 249, 258, 505
SfaNI	GCATC	2 cut(s)	372, 404
SfcI	CTRYAG	1 cut(s)	182
SinI	GGWCC	1 cut(s)	230
SmiMI	CAYNNNNRTG	1 cut(s)	142
Sse9I	AATT	2 cut(s)	54, 488
SspMI	CTAG	2 cut(s)	65, 441
StyD4I	CCNGG	1 cut(s)	524
StyI	CCWWGG	3 cut(s)	143, 282, 468
TaqI	TCGA	3 cut(s)	51, 199, 499
TasI	AATT	2 cut(s)	54, 488
TfiI	GAWTC	1 cut(s)	74
Tru1I	TTAA	2 cut(s)	225, 321
Tru9I	TTAA	2 cut(s)	225, 321
TscAI	CASTG	1 cut(s)	242
TseFI	GTSAC	1 cut(s)	260
Tsp45I	GTSAC	1 cut(s)	260
TspDTI	ATGAA	1 cut(s)	468
TspRI	CASTG	1 cut(s)	242
VpaK11BI	GGWCC	1 cut(s)	230
XceI	RCATGY	2 cut(s)	152, 458
XmiI	GTMKAC	1 cut(s)	36
XspI	CTAG	2 cut(s)	65, 441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.