Rh2BG618400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000142
Physical Location & Seq
Forward (+)
84128525 .. 84129427
903 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG618400.1

Sequence Viewer

Length: 903 bp
ATGCAGAACCCTCCTAGCTTTGCTAGTGCAAGCTTCTTCTTGAATCCAATATCAGGTGACCGAGTCATGCTCCCATCCCCATCCACAATTCCATTATCCAGCAACTTTGAATCTTTCTTCTTGACCAAAGTAGTAGCCTCTTCAGCACCAACAAGCCGGCACTGTTTTGTGGCCGGCTTGGGTACAGTATATTGTCACTTGGCTTTGTGTAGGCCAACCGATGAATCATGGACTCTCATAAAGGCAGAGGAAGACATCGGCGAGCTTCTGTTTTTCGATATAGAAATAATTGATGCAAAATTATATGCTGCAACTTGGAAGCAGGAACCGGAAGTTTCAATACTAGTGTTTGAAATCCAAGATGTTGAAGATGCCAATAAGCCCCTTAGCTATAGGGTTGAGAGTTCGAACTTGCTTCGTTCACGGGCGACTCCGGAGAGGTGGACGGCTGATGGACTCCACGTTGGTGACTGGATTCACTTGGCAAAAGATTCTTCATCAAAGGAGTTATTTATGATTTTTCGTAGGAGTAGTTTTGCCCTTGAGGAGGATCAAATAATCTCTTGGGAGAAGATCTTATATTGTCATAATTTCAGCATTCCAGCTAGGACAGAAGGATTTCGAGTGTTCAAACTAGAGTGCAATGTTAATGGTTCTTGCGATCGGTGGGTAGAAATTGAAGACCTTGGTGATCCAATATTGTTTATCAGTTACTTTAGCAACATATTCATCCCGGCAACTAATAGCCTAAATCCTCATAACCCCGCTAACTCGCTTGGAAGAAACTGTATCTATTTCGCTTCTGATCATCTCTGTTTATCATCATCATCAACATGGAAGAAACCATGTAGGGGTATTTTCTTTCGAAGATTGGCGCGTTGCGCATTTCAGTTTCTCCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295

Protein Analysis

300

Amino Acids

34.05

Weight (kDa)

5.55

Isoelectric Point (pI)

57.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 11 - 269 1.7e-27 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000142)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13532 FvH4_2g28870 FvH4_3g30930 FvH4_3g37281 FvH4_3g37300 FvH4_3g37301 FvH4_3g37301 FvH4_4g23711 FvH4_5g02330 FvH4_6g16960 FvH4_6g16971 FvH4_6g21291 FvH4_6g21331 FvH4_6g22212 FvH4_6g22332 FvH4_6g36920 FvH4_6g37552 FvH4_6g37591 FvH4_6g39721 FvH4_6g46020 FvH4_6g47001 FvH4_6g47002 FvH4_6g47130 FvH4_6g47140 FvH4_6g47161 FvH4_6g47170 FvH4_6g47190 FvH4_6g49120 FvH4_6g49280 FvH4_6g49281 FvH4_6g49640 FvH4_6g49640
malus_domestica MD03G1085600.v1.1 MD09G1027500.v1.1 MD09G1050100.v1.1
prunus_persica Prupe.1G004300_v2.0.a1 Prupe.1G016300_v2.0.a1 Prupe.1G019300_v2.0.a1 Prupe.3G239100_v2.0.a1 Prupe.3G291200_v2.0.a1
pyrus_communis pycom08g02840 pycom08g02860 pycom08g02870
rosa_chinensis RchiOBHm_Chr2g0153831 RchiOBHm_Chr2g0166171 RchiOBHm_Chr2g0166201 RchiOBHm_Chr3g0476221 RchiOBHm_Chr4g0430971 RchiOBHm_Chr5g0067081 RchiOBHm_Chr7g0197821
rosa_laevigata RLG00000001284 RLG00000006996 RLG00000012710 RLG00000019299 RLG00000020285 RLG00000020444 RLG00000020466 RLG00000020591 RLG00000020665 RLG00000020730 RLG00000020732 RLG00000021449 RLG00000021592 RLG00000021593 RLG00000021594 RLG00000021596 RLG00000021597 RLG00000021801 RLG00000023534 RLG00000023538 RLG00000023693 RLG00000023694 RLG00000023699 RLG00000024196 RLG00000024214 RLG00000024220 RLG00000024244 RLG00000024608 RLG00000024612 RLG00000035157 RLG00000035906
rosa_multiflora Rmu_co8282815.1_g000001 Rmu_co8380495.1_g000001 Rmu_co8381111.1_g000001 Rmu_co8460513.1_g000001 Rmu_co8481947.1_g000001 Rmu_co8487937.1_g000001 Rmu_sc0000151.1_g000017 Rmu_sc0001427.1_g000003 Rmu_sc0001427.1_g000006 Rmu_sc0002611.1_g000008 Rmu_sc0003887.1_g000018 Rmu_sc0003887.1_g000019 Rmu_sc0003887.1_g000021 Rmu_sc0004119.1_g000004 Rmu_sc0004329.1_g000003 Rmu_sc0004485.1_g000024 Rmu_sc0005290.1_g000001 Rmu_sc0005609.1_g000006 Rmu_sc0006187.1_g000018 Rmu_sc0006218.1_g000032 Rmu_sc0006218.1_g000033 Rmu_sc0007150.1_g000003 Rmu_sc0007154.1_g000004 Rmu_sc0007154.1_g000005 Rmu_sc0007154.1_g000007 Rmu_sc0008314.1_g000012 Rmu_sc0010073.1_g000023 Rmu_sc0010073.1_g000025 Rmu_sc0011216.1_g000008 Rmu_sc0012445.1_g000005 Rmu_sc0013571.1_g000002 Rmu_sc0018648.1_g000002 Rmu_sc0020961.1_g000002 Rmu_sc0020961.1_g000003 Rmu_sc0023710.1_g000001 Rmu_sc0031310.1_g000008 Rmu_sc0033940.1_g000001 Rmu_sc0035493.1_g000001 Rmu_sc0039285.1_g000001
rosa_roxburghii Rroxscaffold_1G00014000 Rroxscaffold_1G00014020 Rroxscaffold_2G00082760 Rroxscaffold_2G00085090 Rroxscaffold_2G00085100 Rroxscaffold_2G00085140 Rroxscaffold_2G00086670 Rroxscaffold_2G00086680 Rroxscaffold_2G00098190 Rroxscaffold_2G00099270 Rroxscaffold_3G00227460 Rroxscaffold_3G00258190 Rroxscaffold_3G00259780 Rroxscaffold_6G00402940 Rroxscaffold_6G00410200 Rroxscaffold_6G00410210 Rroxscaffold_7G00184320
rosa_rugosa Rorug02G0416100 Rorug02G0416200 Rorug02G0520900 Rorug02G0521200 Rorug02G0521300 Rorug02G0534600 Rorug03G0116300 Rorug03G0162900 Rorug03G0162900 Rorug04G0241400 Rorug05G0380900 Rorug07G0043800
rosa_samantha Rh1AG115300 Rh2BG483700 Rh2BG509900 Rh2BG515700 Rh2BG515800 Rh2BG586500 Rh2BG586600 Rh2BG586700 Rh2BG598800 Rh2BG598900 Rh2BG599100 Rh2BG618400 Rh2BG630500 Rh2CG457400 Rh2CG484900 Rh3AG165300 Rh3AG212900 Rh3AG213300 Rh3BG145800 Rh3BG146100 Rh3BG235300 Rh3BG246500 Rh3BG247000 Rh3BG247100 Rh3CG240300 Rh3CG240800 Rh3CG240900 Rh3CG259600 Rh3DG147000 Rh3DG184800 Rh3DG184900 Rh3DG185000 Rh3DG239500 Rh3DG240100 Rh3DG240200 Rh3DG255800 Rh5BG458500 Rh5CG480400 Rh7BG170400 Rh7BG407900 Rh7CG176900
rosa_wichuraiana Rw2G038990 Rw2G041550 Rw2G047660 Rw2G048940 Rw4G026370 Rw6G008730 Rw7G014600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 883
AccII CGCG 1 cut(s) 877
AccIII TCCGGA 1 cut(s) 433
AciI CCGC 1 cut(s) 765
AclWI GGATC 2 cut(s) 558, 686
AcoI YGGCCR 1 cut(s) 171
AcuI CTGAAG 1 cut(s) 126
AfaI GTAC 1 cut(s) 184
AfiI CCNNNNNNNGG 3 cut(s) 53, 547, 851
AgsI TTSAA 7 cut(s) 43, 110, 339, 353, 368, 631, 680
AhlI ACTAGT 1 cut(s) 343
AleI CACNNNNGTG 1 cut(s) 465
AluBI AGCT 5 cut(s) 18, 33, 265, 390, 605
AluI AGCT 5 cut(s) 18, 33, 265, 390, 605
AlwI GGATC 2 cut(s) 558, 686
Aor13HI TCCGGA 1 cut(s) 433
AoxI GGCC 2 cut(s) 171, 212
ApeKI GCWGC 1 cut(s) 308
Asp700I GAANNNNTTC 1 cut(s) 618
AspLEI GCGC 2 cut(s) 877, 884
AsuC2I CCSGG 1 cut(s) 734
AsuHPI GGTGA 3 cut(s) 68, 479, 701
AsuII TTCGAA 2 cut(s) 407, 865
BarI GAAGNNNNNNTAC 2 cut(s) 324, 356
BbsI GAAGAC 2 cut(s) 258, 687
BbvI GCAGC 1 cut(s) 295
BccI CCATC 3 cut(s) 82, 88, 446
BceAI ACGGC 1 cut(s) 462
BclI TGATCA 1 cut(s) 805
BcnI CCSGG 1 cut(s) 734
BcuI ACTAGT 1 cut(s) 343
BfaI CTAG 5 cut(s) 15, 24, 344, 606, 635
BfmI CTRYAG 1 cut(s) 391
BglII AGATCT 1 cut(s) 573
BisI GCNGC 1 cut(s) 309
BlsI GCNGC 1 cut(s) 310
Bme1390I CCNGG 1 cut(s) 734
BmiI GGNNCC 1 cut(s) 327
BmrFI CCNGG 1 cut(s) 734
BmsI GCATC 2 cut(s) 283, 361
BpiI GAAGAC 2 cut(s) 258, 687
BplI GAGNNNNNCTC 2 cut(s) 54, 86
Bpu10I CCTNAGC 1 cut(s) 386
Bpu14I TTCGAA 2 cut(s) 407, 865
BpuEI CTTGAG 1 cut(s) 563
BpuMI CCSGG 1 cut(s) 734
BsaJI CCNNGG 1 cut(s) 685
BsaWI WCCGGW 2 cut(s) 328, 433
Bsc4I CCNNNNNNNGG 3 cut(s) 53, 547, 851
Bse118I RCCGGY 2 cut(s) 156, 173
Bse1I ACTGG 1 cut(s) 476
Bse3DI GCAATG 1 cut(s) 649
BseAI TCCGGA 1 cut(s) 433
BseDI CCNNGG 1 cut(s) 685
BseGI GGATG 3 cut(s) 74, 80, 729
BseLI CCNNNNNNNGG 3 cut(s) 53, 547, 851
BseMI GCAATG 1 cut(s) 649
BseNI ACTGG 1 cut(s) 476
BseRI GAGGAG 1 cut(s) 560
BseXI GCAGC 1 cut(s) 295
Bsh1236I CGCG 1 cut(s) 877
Bsh1285I CGRYCG 1 cut(s) 664
BshFI GGCC 2 cut(s) 173, 214
BsiEI CGRYCG 1 cut(s) 664
BsiSI CCGG 5 cut(s) 157, 174, 329, 434, 734
BslI CCNNNNNNNGG 3 cut(s) 53, 547, 851
BsmI GAATGC 1 cut(s) 597
BsnI GGCC 2 cut(s) 173, 214
Bsp119I TTCGAA 2 cut(s) 407, 865
Bsp13I TCCGGA 1 cut(s) 433
Bsp143I GATC 5 cut(s) 550, 573, 661, 691, 805
BspACI CCGC 1 cut(s) 765
BspANI GGCC 2 cut(s) 173, 214
BspEI TCCGGA 1 cut(s) 433
BspFNI CGCG 1 cut(s) 877
BspLI GGNNCC 1 cut(s) 327
BspPI GGATC 2 cut(s) 558, 686
BspT104I TTCGAA 2 cut(s) 407, 865
BsrDI GCAATG 1 cut(s) 649
BsrFI RCCGGY 2 cut(s) 156, 173
BsrI ACTGG 1 cut(s) 476
BssAI RCCGGY 2 cut(s) 156, 173
BssECI CCNNGG 1 cut(s) 685
BssMI GATC 5 cut(s) 550, 573, 661, 691, 805
BssT1I CCWWGG 1 cut(s) 685
Bst4CI ACNGT 3 cut(s) 164, 187, 788
Bst6I CTCTTC 1 cut(s) 145
BstBI TTCGAA 2 cut(s) 407, 865
BstC8I GCNNGC 4 cut(s) 31, 158, 175, 263
BstDEI CTNAG 1 cut(s) 386
BstEII GGTNACC 1 cut(s) 56
BstENI CCTNNNNNAGG 1 cut(s) 545
BstF5I GGATG 3 cut(s) 74, 80, 729
BstFNI CGCG 1 cut(s) 877
BstHHI GCGC 2 cut(s) 877, 884
BstKTI GATC 5 cut(s) 553, 576, 664, 694, 808
BstMBI GATC 5 cut(s) 550, 573, 661, 691, 805
BstMCI CGRYCG 1 cut(s) 664
BstMWI GCNNNNNNNGC 2 cut(s) 143, 881
BstPI GGTNACC 1 cut(s) 56
BstSCI CCNGG 1 cut(s) 732
BstSFI CTRYAG 1 cut(s) 391
BstUI CGCG 1 cut(s) 877
BstV1I GCAGC 1 cut(s) 295
BstV2I GAAGAC 2 cut(s) 258, 687
BstX2I RGATCY 1 cut(s) 573
BstYI RGATCY 1 cut(s) 573
BsuRI GGCC 2 cut(s) 173, 214
BtsCI GGATG 3 cut(s) 74, 80, 729
BtsIMutI CAGTG 1 cut(s) 160
Cac8I GCNNGC 4 cut(s) 31, 158, 175, 263
CfoI GCGC 2 cut(s) 877, 884
Cfr10I RCCGGY 2 cut(s) 156, 173
Csp6I GTAC 1 cut(s) 183
CviAII CATG 4 cut(s) 67, 228, 834, 846
CviQI GTAC 1 cut(s) 183
DdeI CTNAG 1 cut(s) 386
DpnI GATC 5 cut(s) 552, 575, 663, 693, 807
DpnII GATC 5 cut(s) 550, 573, 661, 691, 805
EaeI YGGCCR 1 cut(s) 171
Eam1104I CTCTTC 1 cut(s) 145
EarI CTCTTC 1 cut(s) 145
Eco130I CCWWGG 1 cut(s) 685
Eco57I CTGAAG 1 cut(s) 126
Eco91I GGTNACC 1 cut(s) 56
EcoNI CCTNNNNNAGG 1 cut(s) 545
EcoO65I GGTNACC 1 cut(s) 56
EcoT14I CCWWGG 1 cut(s) 685
ErhI CCWWGG 1 cut(s) 685
FaeI CATG 4 cut(s) 70, 231, 837, 849
FatI CATG 4 cut(s) 66, 227, 833, 845
FauI CCCGC 1 cut(s) 772
FbaI TGATCA 1 cut(s) 805
Fnu4HI GCNGC 1 cut(s) 309
FokI GGATG 3 cut(s) 61, 67, 716
Fsp4HI GCNGC 1 cut(s) 309
FspBI CTAG 5 cut(s) 15, 24, 344, 606, 635
FspI TGCGCA 1 cut(s) 883
GlaI GCGC 2 cut(s) 876, 883
GluI GCNGC 1 cut(s) 309
HaeIII GGCC 2 cut(s) 173, 214
HapII CCGG 5 cut(s) 157, 174, 329, 434, 734
HhaI GCGC 2 cut(s) 877, 884
Hin1II CATG 4 cut(s) 70, 231, 837, 849
Hin6I GCGC 2 cut(s) 875, 882
HinP1I GCGC 2 cut(s) 875, 882
HindIII AAGCTT 1 cut(s) 31
HinfI GANTC 9 cut(s) 43, 63, 110, 224, 232, 430, 456, 475, 491
HpaII CCGG 5 cut(s) 157, 174, 329, 434, 734
HphI GGTGA 3 cut(s) 68, 479, 701
Hpy166II GTNNAC 2 cut(s) 422, 444
Hpy188I TCNGA 1 cut(s) 805
Hpy188III TCNNGA 3 cut(s) 40, 121, 434
Hpy8I GTNNAC 2 cut(s) 422, 444
HpyAV CCTTC 1 cut(s) 608
HpyCH4III ACNGT 3 cut(s) 164, 187, 788
HpyCH4IV ACGT 1 cut(s) 462
HpyCH4V TGCA 5 cut(s) 4, 29, 296, 311, 642
HpyF10VI GCNNNNNNNGC 2 cut(s) 143, 881
HpyF3I CTNAG 1 cut(s) 386
HpySE526I ACGT 1 cut(s) 462
Hsp92II CATG 4 cut(s) 70, 231, 837, 849
HspAI GCGC 2 cut(s) 875, 882
Kpn2I TCCGGA 1 cut(s) 433
KroI GCCGGC 2 cut(s) 156, 173
KroNI GCCGGC 2 cut(s) 158, 175
Ksp22I TGATCA 1 cut(s) 805
Kzo9I GATC 5 cut(s) 550, 573, 661, 691, 805
LmnI GCTCC 1 cut(s) 75
Lsp1109I GCAGC 1 cut(s) 295
LweI GCATC 2 cut(s) 283, 361
MaeI CTAG 5 cut(s) 15, 24, 344, 606, 635
MaeII ACGT 1 cut(s) 462
MaeIII GTNAC 4 cut(s) 56, 194, 467, 710
MalI GATC 5 cut(s) 552, 575, 663, 693, 807
MboI GATC 5 cut(s) 550, 573, 661, 691, 805
MflI RGATCY 1 cut(s) 573
MluCI AATT 5 cut(s) 87, 288, 299, 589, 675
MlyI GAGTC 4 cut(s) 72, 226, 424, 450
MnlI CCTC 7 cut(s) 21, 148, 241, 432, 538, 541, 765
MroI TCCGGA 1 cut(s) 433
MroNI GCCGGC 2 cut(s) 156, 173
MroXI GAANNNNTTC 1 cut(s) 618
MseI TTAA 1 cut(s) 648
MslI CAYNNNNRTG 2 cut(s) 465, 832
MspI CCGG 5 cut(s) 157, 174, 329, 434, 734
MspR9I CCNGG 1 cut(s) 734
Mva1269I GAATGC 1 cut(s) 597
MvnI CGCG 1 cut(s) 877
MwoI GCNNNNNNNGC 2 cut(s) 143, 881
NaeI GCCGGC 2 cut(s) 158, 175
NciI CCSGG 1 cut(s) 734
NdeII GATC 5 cut(s) 550, 573, 661, 691, 805
NgoMIV GCCGGC 2 cut(s) 156, 173
NlaIII CATG 4 cut(s) 70, 231, 837, 849
NlaIV GGNNCC 1 cut(s) 327
NmuCI GTSAC 3 cut(s) 56, 194, 467
NsbI TGCGCA 1 cut(s) 883
NspV TTCGAA 2 cut(s) 407, 865
OliI CACNNNNGTG 1 cut(s) 465
PctI GAATGC 1 cut(s) 597
PdiI GCCGGC 2 cut(s) 158, 175
PdmI GAANNNNTTC 1 cut(s) 618
PfeI GAWTC 5 cut(s) 43, 110, 224, 475, 491
PflFI GACNNNGTC 1 cut(s) 62
PkrI GCNGC 1 cut(s) 310
Ple19I CGATCG 1 cut(s) 664
PleI GAGTC 4 cut(s) 71, 226, 424, 450
PpsI GAGTC 4 cut(s) 71, 226, 424, 450
PspEI GGTNACC 1 cut(s) 56
PspN4I GGNNCC 1 cut(s) 327
PsuI RGATCY 1 cut(s) 573
PsyI GACNNNGTC 1 cut(s) 62
PvuI CGATCG 1 cut(s) 664
RsaI GTAC 1 cut(s) 184
RsaNI GTAC 1 cut(s) 183
RseI CAYNNNNRTG 2 cut(s) 465, 832
SaqAI TTAA 1 cut(s) 648
SatI GCNGC 1 cut(s) 309
Sau3AI GATC 5 cut(s) 550, 573, 661, 691, 805
SchI GAGTC 4 cut(s) 72, 226, 424, 450
ScrFI CCNGG 1 cut(s) 734
SetI ASST 9 cut(s) 20, 35, 58, 267, 392, 443, 465, 607, 687
SfaNI GCATC 2 cut(s) 283, 361
SfcI CTRYAG 1 cut(s) 391
SfuI TTCGAA 2 cut(s) 407, 865
SmiMI CAYNNNNRTG 2 cut(s) 465, 832
SmlI CTYRAG 1 cut(s) 542
SmoI CTYRAG 1 cut(s) 542
SpeI ACTAGT 1 cut(s) 343
Sse9I AATT 5 cut(s) 87, 288, 299, 589, 675
SsiI CCGC 1 cut(s) 765
SspI AATATT 1 cut(s) 699
SspMI CTAG 5 cut(s) 15, 24, 344, 606, 635
StyD4I CCNGG 1 cut(s) 732
StyI CCWWGG 1 cut(s) 685
TaaI ACNGT 3 cut(s) 164, 187, 788
TaiI ACGT 1 cut(s) 465
TaqI TCGA 4 cut(s) 276, 407, 622, 865
TaqII GACCGA 1 cut(s) 75
TasI AATT 5 cut(s) 87, 288, 299, 589, 675
TfiI GAWTC 5 cut(s) 43, 110, 224, 475, 491
Tru1I TTAA 1 cut(s) 648
Tru9I TTAA 1 cut(s) 648
TscAI CASTG 1 cut(s) 167
TseFI GTSAC 3 cut(s) 56, 194, 467
TseI GCWGC 1 cut(s) 308
Tsp45I GTSAC 3 cut(s) 56, 194, 467
TspDTI ATGAA 3 cut(s) 237, 486, 718
TspRI CASTG 1 cut(s) 167
Tth111I GACNNNGTC 1 cut(s) 62
XagI CCTNNNNNAGG 1 cut(s) 545
XmnI GAANNNNTTC 1 cut(s) 618
XspI CTAG 5 cut(s) 15, 24, 344, 606, 635
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.