Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Beta-prop_KIB1-4 | PF03478 | 106 - 205 | 1.2e-09 | KIB1-4 beta-propeller |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 642 |
| AciI | CCGC | 2 cut(s) | 150, 755 |
| AclWI | GGATC | 5 cut(s) | 332, 704, 852, 947, 1004 |
| AcsI | RAATTY | 1 cut(s) | 1157 |
| AcuI | CTGAAG | 1 cut(s) | 855 |
| AfaI | GTAC | 1 cut(s) | 101 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 231, 236, 905 |
| AgeI | ACCGGT | 1 cut(s) | 878 |
| AgsI | TTSAA | 2 cut(s) | 79, 400 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 662, 694 |
| AluBI | AGCT | 1 cut(s) | 170 |
| AluI | AGCT | 1 cut(s) | 170 |
| Alw26I | GTCTC | 2 cut(s) | 521, 1096 |
| AlwI | GGATC | 5 cut(s) | 332, 704, 852, 947, 1004 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 281, 932 |
| Ama87I | CYCGRG | 1 cut(s) | 328 |
| AoxI | GGCC | 3 cut(s) | 366, 463, 497 |
| ApeKI | GCWGC | 2 cut(s) | 433, 857 |
| ApoI | RAATTY | 1 cut(s) | 1157 |
| AsiGI | ACCGGT | 1 cut(s) | 878 |
| AspLEI | GCGC | 1 cut(s) | 643 |
| AspS9I | GGNCC | 4 cut(s) | 219, 367, 516, 747 |
| AsuHPI | GGTGA | 3 cut(s) | 294, 411, 825 |
| AsuII | TTCGAA | 1 cut(s) | 735 |
| AvaI | CYCGRG | 1 cut(s) | 328 |
| AvaII | GGWCC | 3 cut(s) | 219, 516, 747 |
| BbsI | GAAGAC | 2 cut(s) | 858, 1089 |
| BbvI | GCAGC | 2 cut(s) | 420, 844 |
| BccI | CCATC | 7 cut(s) | 192, 234, 350, 563, 1025, 1073, 1103 |
| BceAI | ACGGC | 1 cut(s) | 110 |
| BcoDI | GTCTC | 2 cut(s) | 521, 1096 |
| BfmI | CTRYAG | 2 cut(s) | 373, 924 |
| BisI | GCNGC | 4 cut(s) | 150, 434, 756, 858 |
| BlsI | GCNGC | 4 cut(s) | 151, 435, 757, 859 |
| Bme18I | GGWCC | 3 cut(s) | 219, 516, 747 |
| BmeT110I | CYCGRG | 1 cut(s) | 328 |
| BmgT120I | GGNCC | 4 cut(s) | 219, 367, 516, 747 |
| BmiI | GGNNCC | 2 cut(s) | 369, 886 |
| BmsI | GCATC | 3 cut(s) | 371, 763, 994 |
| BpiI | GAAGAC | 2 cut(s) | 858, 1089 |
| Bpu10I | CCTNAGC | 1 cut(s) | 215 |
| Bpu14I | TTCGAA | 1 cut(s) | 735 |
| BpuEI | CTTGAG | 1 cut(s) | 527 |
| BsaBI | GATNNNNATC | 2 cut(s) | 782, 843 |
| BsaI | GGTCTC | 2 cut(s) | 521, 1096 |
| BsaJI | CCNNGG | 4 cut(s) | 203, 230, 606, 669 |
| BsaWI | WCCGGW | 2 cut(s) | 835, 878 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 32, 62 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 231, 236, 905 |
| Bse118I | RCCGGY | 2 cut(s) | 364, 878 |
| Bse1I | ACTGG | 1 cut(s) | 1141 |
| Bse3DI | GCAATG | 1 cut(s) | 750 |
| Bse8I | GATNNNNATC | 2 cut(s) | 782, 843 |
| BseDI | CCNNGG | 4 cut(s) | 203, 230, 606, 669 |
| BseGI | GGATG | 3 cut(s) | 226, 630, 1009 |
| BseJI | GATNNNNATC | 2 cut(s) | 782, 843 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 231, 236, 905 |
| BseMI | GCAATG | 1 cut(s) | 750 |
| BseMII | CTCAG | 2 cut(s) | 229, 995 |
| BseNI | ACTGG | 1 cut(s) | 1141 |
| BseRI | GAGGAG | 3 cut(s) | 50, 53, 1003 |
| BseXI | GCAGC | 2 cut(s) | 420, 844 |
| Bsh1285I | CGRYCG | 1 cut(s) | 786 |
| BshFI | GGCC | 3 cut(s) | 368, 465, 499 |
| BshTI | ACCGGT | 1 cut(s) | 878 |
| BsiEI | CGRYCG | 1 cut(s) | 786 |
| BsiHKCI | CYCGRG | 1 cut(s) | 328 |
| BsiSI | CCGG | 3 cut(s) | 365, 836, 879 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 231, 236, 905 |
| BsmAI | GTCTC | 2 cut(s) | 521, 1096 |
| BsmI | GAATGC | 2 cut(s) | 664, 973 |
| BsnI | GGCC | 3 cut(s) | 368, 465, 499 |
| Bso31I | GGTCTC | 2 cut(s) | 521, 1096 |
| BsoBI | CYCGRG | 1 cut(s) | 328 |
| Bsp119I | TTCGAA | 1 cut(s) | 735 |
| Bsp1407I | TGTACA | 1 cut(s) | 99 |
| Bsp143I | GATC | 7 cut(s) | 337, 696, 783, 844, 900, 939, 996 |
| Bsp19I | CCATGG | 1 cut(s) | 203 |
| BspACI | CCGC | 2 cut(s) | 150, 755 |
| BspANI | GGCC | 3 cut(s) | 368, 465, 499 |
| BspCNI | CTCAG | 2 cut(s) | 228, 994 |
| BspHI | TCATGA | 1 cut(s) | 334 |
| BspLI | GGNNCC | 2 cut(s) | 369, 886 |
| BspPI | GGATC | 5 cut(s) | 332, 704, 852, 947, 1004 |
| BspT104I | TTCGAA | 1 cut(s) | 735 |
| BspTNI | GGTCTC | 2 cut(s) | 521, 1096 |
| BsrDI | GCAATG | 1 cut(s) | 750 |
| BsrFI | RCCGGY | 2 cut(s) | 364, 878 |
| BsrGI | TGTACA | 1 cut(s) | 99 |
| BsrI | ACTGG | 1 cut(s) | 1141 |
| BssAI | RCCGGY | 2 cut(s) | 364, 878 |
| BssECI | CCNNGG | 4 cut(s) | 203, 230, 606, 669 |
| BssMI | GATC | 7 cut(s) | 337, 696, 783, 844, 900, 939, 996 |
| BssT1I | CCWWGG | 2 cut(s) | 203, 669 |
| Bst4CI | ACNGT | 3 cut(s) | 390, 595, 1090 |
| Bst6I | CTCTTC | 6 cut(s) | 38, 769, 835, 895, 925, 1021 |
| BstAUI | TGTACA | 1 cut(s) | 99 |
| BstBI | TTCGAA | 1 cut(s) | 735 |
| BstC8I | GCNNGC | 3 cut(s) | 366, 463, 645 |
| BstDEI | CTNAG | 3 cut(s) | 215, 314, 981 |
| BstDSI | CCRYGG | 1 cut(s) | 203 |
| BstF5I | GGATG | 3 cut(s) | 226, 630, 1009 |
| BstHHI | GCGC | 1 cut(s) | 643 |
| BstKTI | GATC | 7 cut(s) | 340, 699, 786, 847, 903, 942, 999 |
| BstMAI | GTCTC | 2 cut(s) | 521, 1096 |
| BstMBI | GATC | 7 cut(s) | 337, 696, 783, 844, 900, 939, 996 |
| BstMCI | CGRYCG | 1 cut(s) | 786 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 132, 442, 1129 |
| BstNSI | RCATGY | 2 cut(s) | 327, 647 |
| BstSFI | CTRYAG | 2 cut(s) | 373, 924 |
| BstV1I | GCAGC | 2 cut(s) | 420, 844 |
| BstV2I | GAAGAC | 2 cut(s) | 858, 1089 |
| BsuRI | GGCC | 3 cut(s) | 368, 465, 499 |
| BtgI | CCRYGG | 1 cut(s) | 203 |
| BtsCI | GGATG | 3 cut(s) | 226, 630, 1009 |
| BtsIMutI | CAGTG | 1 cut(s) | 386 |
| Cac8I | GCNNGC | 3 cut(s) | 366, 463, 645 |
| CaiI | CAGNNNCTG | 2 cut(s) | 281, 932 |
| CciI | TCATGA | 1 cut(s) | 334 |
| CfoI | GCGC | 1 cut(s) | 643 |
| Cfr10I | RCCGGY | 2 cut(s) | 364, 878 |
| Cfr13I | GGNCC | 4 cut(s) | 219, 367, 516, 747 |
| CseI | GACGC | 3 cut(s) | 849, 996, 1038 |
| Csp6I | GTAC | 1 cut(s) | 100 |
| CspAI | ACCGGT | 1 cut(s) | 878 |
| CviAII | CATG | 6 cut(s) | 204, 324, 335, 513, 644, 1039 |
| CviQI | GTAC | 1 cut(s) | 100 |
| DdeI | CTNAG | 3 cut(s) | 215, 314, 981 |
| DpnI | GATC | 7 cut(s) | 339, 698, 785, 846, 902, 941, 998 |
| DpnII | GATC | 7 cut(s) | 337, 696, 783, 844, 900, 939, 996 |
| DraI | TTTAAA | 1 cut(s) | 550 |
| Eam1104I | CTCTTC | 6 cut(s) | 38, 769, 835, 895, 925, 1021 |
| EarI | CTCTTC | 6 cut(s) | 38, 769, 835, 895, 925, 1021 |
| Eco130I | CCWWGG | 2 cut(s) | 203, 669 |
| Eco31I | GGTCTC | 2 cut(s) | 521, 1096 |
| Eco47I | GGWCC | 3 cut(s) | 219, 516, 747 |
| Eco57I | CTGAAG | 1 cut(s) | 855 |
| Eco88I | CYCGRG | 1 cut(s) | 328 |
| EcoO109I | RGGNCCY | 1 cut(s) | 219 |
| EcoT14I | CCWWGG | 2 cut(s) | 203, 669 |
| ErhI | CCWWGG | 2 cut(s) | 203, 669 |
| FaeI | CATG | 6 cut(s) | 207, 327, 338, 516, 647, 1042 |
| FatI | CATG | 6 cut(s) | 203, 323, 334, 512, 643, 1038 |
| Fnu4HI | GCNGC | 4 cut(s) | 150, 434, 756, 858 |
| FokI | GGATG | 3 cut(s) | 213, 617, 1016 |
| Fsp4HI | GCNGC | 4 cut(s) | 150, 434, 756, 858 |
| FspI | TGCGCA | 1 cut(s) | 642 |
| GlaI | GCGC | 1 cut(s) | 642 |
| GluI | GCNGC | 4 cut(s) | 150, 434, 756, 858 |
| HaeIII | GGCC | 3 cut(s) | 368, 465, 499 |
| HapII | CCGG | 3 cut(s) | 365, 836, 879 |
| HgaI | GACGC | 3 cut(s) | 849, 996, 1038 |
| HhaI | GCGC | 1 cut(s) | 643 |
| Hin1II | CATG | 6 cut(s) | 207, 327, 338, 516, 647, 1042 |
| Hin6I | GCGC | 1 cut(s) | 641 |
| HinP1I | GCGC | 1 cut(s) | 641 |
| HinfI | GANTC | 8 cut(s) | 60, 331, 506, 706, 809, 815, 956, 986 |
| HpaII | CCGG | 3 cut(s) | 365, 836, 879 |
| HphI | GGTGA | 3 cut(s) | 294, 411, 825 |
| Hpy188I | TCNGA | 6 cut(s) | 109, 808, 814, 900, 955, 996 |
| Hpy188III | TCNNGA | 3 cut(s) | 335, 400, 983 |
| Hpy99I | CGWCG | 2 cut(s) | 865, 947 |
| HpyAV | CCTTC | 4 cut(s) | 25, 256, 403, 529 |
| HpyCH4III | ACNGT | 3 cut(s) | 390, 595, 1090 |
| HpyCH4V | TGCA | 6 cut(s) | 384, 664, 693, 1038, 1117, 1184 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 132, 442, 1129 |
| HpyF3I | CTNAG | 3 cut(s) | 215, 314, 981 |
| Hsp92II | CATG | 6 cut(s) | 207, 327, 338, 516, 647, 1042 |
| HspAI | GCGC | 1 cut(s) | 641 |
| KroI | GCCGGC | 1 cut(s) | 364 |
| KroNI | GCCGGC | 1 cut(s) | 366 |
| Kzo9I | GATC | 7 cut(s) | 337, 696, 783, 844, 900, 939, 996 |
| Lsp1109I | GCAGC | 2 cut(s) | 420, 844 |
| LweI | GCATC | 3 cut(s) | 371, 763, 994 |
| MaeIII | GTNAC | 2 cut(s) | 317, 586 |
| MalI | GATC | 7 cut(s) | 339, 698, 785, 846, 902, 941, 998 |
| MboI | GATC | 7 cut(s) | 337, 696, 783, 844, 900, 939, 996 |
| MluCI | AATT | 3 cut(s) | 263, 575, 1157 |
| MlyI | GAGTC | 3 cut(s) | 54, 340, 715 |
| MmeI | TCCRAC | 3 cut(s) | 725, 933, 974 |
| MroNI | GCCGGC | 1 cut(s) | 364 |
| MseI | TTAA | 2 cut(s) | 549, 1161 |
| MslI | CAYNNNNRTG | 1 cut(s) | 648 |
| MspA1I | CMGCKG | 1 cut(s) | 152 |
| MspI | CCGG | 3 cut(s) | 365, 836, 879 |
| Mva1269I | GAATGC | 2 cut(s) | 664, 973 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 132, 442, 1129 |
| NaeI | GCCGGC | 1 cut(s) | 366 |
| NcoI | CCATGG | 1 cut(s) | 203 |
| NdeII | GATC | 7 cut(s) | 337, 696, 783, 844, 900, 939, 996 |
| NgoMIV | GCCGGC | 1 cut(s) | 364 |
| NlaIII | CATG | 6 cut(s) | 207, 327, 338, 516, 647, 1042 |
| NlaIV | GGNNCC | 2 cut(s) | 369, 886 |
| NmeAIII | GCCGAG | 2 cut(s) | 211, 587 |
| NsbI | TGCGCA | 1 cut(s) | 642 |
| NspI | RCATGY | 2 cut(s) | 327, 647 |
| NspV | TTCGAA | 1 cut(s) | 735 |
| PaeI | GCATGC | 1 cut(s) | 647 |
| PagI | TCATGA | 1 cut(s) | 334 |
| PctI | GAATGC | 2 cut(s) | 664, 973 |
| PdiI | GCCGGC | 1 cut(s) | 366 |
| PfeI | GAWTC | 5 cut(s) | 506, 809, 815, 956, 986 |
| PinAI | ACCGGT | 1 cut(s) | 878 |
| PkrI | GCNGC | 4 cut(s) | 151, 435, 757, 859 |
| Ple19I | CGATCG | 1 cut(s) | 786 |
| PleI | GAGTC | 3 cut(s) | 54, 339, 714 |
| PpsI | GAGTC | 3 cut(s) | 54, 339, 714 |
| PpuMI | RGGWCCY | 1 cut(s) | 219 |
| Psp5II | RGGWCCY | 1 cut(s) | 219 |
| PspN4I | GGNNCC | 2 cut(s) | 369, 886 |
| PspPI | GGNCC | 4 cut(s) | 219, 367, 516, 747 |
| PspPPI | RGGWCCY | 1 cut(s) | 219 |
| PstNI | CAGNNNCTG | 2 cut(s) | 281, 932 |
| PvuI | CGATCG | 1 cut(s) | 786 |
| RsaI | GTAC | 1 cut(s) | 101 |
| RsaNI | GTAC | 1 cut(s) | 100 |
| RseI | CAYNNNNRTG | 1 cut(s) | 648 |
| SaqAI | TTAA | 2 cut(s) | 549, 1161 |
| SatI | GCNGC | 4 cut(s) | 150, 434, 756, 858 |
| Sau3AI | GATC | 7 cut(s) | 337, 696, 783, 844, 900, 939, 996 |
| Sau96I | GGNCC | 4 cut(s) | 219, 367, 516, 747 |
| SchI | GAGTC | 3 cut(s) | 54, 340, 715 |
| SetI | ASST | 5 cut(s) | 50, 172, 221, 481, 521 |
| SfaNI | GCATC | 3 cut(s) | 371, 763, 994 |
| SfcI | CTRYAG | 2 cut(s) | 373, 924 |
| SfuI | TTCGAA | 1 cut(s) | 735 |
| SgrAI | CRCCGGYG | 1 cut(s) | 878 |
| SinI | GGWCC | 3 cut(s) | 219, 516, 747 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 648 |
| SmlI | CTYRAG | 1 cut(s) | 542 |
| SmoI | CTYRAG | 1 cut(s) | 542 |
| SphI | GCATGC | 1 cut(s) | 647 |
| Sse9I | AATT | 3 cut(s) | 263, 575, 1157 |
| SsiI | CCGC | 2 cut(s) | 150, 755 |
| StyI | CCWWGG | 2 cut(s) | 203, 669 |
| TaaI | ACNGT | 3 cut(s) | 390, 595, 1090 |
| TaqI | TCGA | 5 cut(s) | 704, 735, 782, 818, 1029 |
| TasI | AATT | 3 cut(s) | 263, 575, 1157 |
| TatI | WGTACW | 1 cut(s) | 99 |
| TauI | GCSGC | 2 cut(s) | 152, 758 |
| TfiI | GAWTC | 5 cut(s) | 506, 809, 815, 956, 986 |
| Tru1I | TTAA | 2 cut(s) | 549, 1161 |
| Tru9I | TTAA | 2 cut(s) | 549, 1161 |
| TscAI | CASTG | 1 cut(s) | 393 |
| TseI | GCWGC | 2 cut(s) | 433, 857 |
| TspDTI | ATGAA | 5 cut(s) | 238, 455, 498, 511, 1170 |
| TspGWI | ACGGA | 3 cut(s) | 252, 671, 949 |
| TspRI | CASTG | 1 cut(s) | 393 |
| VpaK11BI | GGWCC | 3 cut(s) | 219, 516, 747 |
| XapI | RAATTY | 1 cut(s) | 1157 |
| XceI | RCATGY | 2 cut(s) | 327, 647 |