Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 915 |
| AccB1I | GGYRCC | 1 cut(s) | 1847 |
| AccBSI | CCGCTC | 1 cut(s) | 2047 |
| AccI | GTMKAC | 4 cut(s) | 370, 1684, 1996, 2249 |
| AccII | CGCG | 2 cut(s) | 930, 1034 |
| AciI | CCGC | 9 cut(s) | 181, 601, 1032, 1438, 1915, 2047, 2123, 2352, 2789 |
| AclI | AACGTT | 2 cut(s) | 919, 936 |
| AclWI | GGATC | 7 cut(s) | 79, 394, 869, 1007, 1314, 2342, 2716 |
| AcoI | YGGCCR | 2 cut(s) | 2155, 2201 |
| AcsI | RAATTY | 5 cut(s) | 153, 740, 1051, 2114, 2386 |
| AcuI | CTGAAG | 4 cut(s) | 456, 603, 1770, 1917 |
| AcyI | GRCGYC | 3 cut(s) | 430, 1744, 1848 |
| AfaI | GTAC | 6 cut(s) | 255, 1433, 1517, 1801, 2443, 2870 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 530, 1329, 1330, 1844 |
| AflII | CTTAAG | 1 cut(s) | 682 |
| AflIII | ACRYGT | 4 cut(s) | 198, 1408, 1479, 1796 |
| AjiI | CACGTC | 1 cut(s) | 1409 |
| AjnI | CCWGG | 4 cut(s) | 452, 1111, 2446, 2829 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1326, 1358 |
| Alw21I | GWGCWC | 2 cut(s) | 538, 1973 |
| Alw26I | GTCTC | 2 cut(s) | 1370, 2813 |
| AlwI | GGATC | 7 cut(s) | 79, 394, 869, 1007, 1314, 2342, 2716 |
| Ama87I | CYCGRG | 3 cut(s) | 1851, 2409, 2570 |
| AoxI | GGCC | 5 cut(s) | 1204, 2155, 2201, 2539, 2832 |
| ApeKI | GCWGC | 5 cut(s) | 650, 779, 1961, 2510, 2771 |
| ApoI | RAATTY | 5 cut(s) | 153, 740, 1051, 2114, 2386 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 97, 129 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 339, 2271 |
| AspLEI | GCGC | 5 cut(s) | 625, 930, 1396, 1572, 1850 |
| AspS9I | GGNCC | 2 cut(s) | 705, 1029 |
| AsuII | TTCGAA | 1 cut(s) | 116 |
| AvaI | CYCGRG | 3 cut(s) | 1851, 2409, 2570 |
| AvaII | GGWCC | 2 cut(s) | 705, 1029 |
| BaeGI | GKGCMC | 1 cut(s) | 738 |
| BalI | TGGCCA | 1 cut(s) | 2203 |
| BanI | GGYRCC | 1 cut(s) | 1847 |
| BanII | GRGCYC | 1 cut(s) | 538 |
| BbsI | GAAGAC | 1 cut(s) | 125 |
| Bbv12I | GWGCWC | 2 cut(s) | 538, 1973 |
| BbvI | GCAGC | 5 cut(s) | 637, 766, 1948, 2497, 2758 |
| BceAI | ACGGC | 2 cut(s) | 1219, 2170 |
| BciT130I | CCWGG | 4 cut(s) | 454, 1113, 2448, 2831 |
| BciVI | GTATCC | 1 cut(s) | 41 |
| BclI | TGATCA | 6 cut(s) | 405, 1467, 1719, 2184, 2370, 2551 |
| BcoDI | GTCTC | 2 cut(s) | 1370, 2813 |
| BfaI | CTAG | 6 cut(s) | 123, 690, 798, 1329, 2001, 2279 |
| BfoI | RGCGCY | 3 cut(s) | 626, 1573, 1851 |
| BfrI | CTTAAG | 1 cut(s) | 682 |
| BfuI | GTATCC | 1 cut(s) | 41 |
| BisI | GCNGC | 6 cut(s) | 651, 780, 1962, 2048, 2511, 2772 |
| BlpI | GCTNAGC | 1 cut(s) | 2775 |
| BlsI | GCNGC | 6 cut(s) | 652, 781, 1963, 2049, 2512, 2773 |
| BmcAI | AGTACT | 1 cut(s) | 1517 |
| Bme1390I | CCNGG | 4 cut(s) | 454, 1113, 2448, 2831 |
| Bme18I | GGWCC | 2 cut(s) | 705, 1029 |
| BmeT110I | CYCGRG | 3 cut(s) | 1851, 2409, 2570 |
| BmgBI | CACGTC | 1 cut(s) | 1409 |
| BmgT120I | GGNCC | 2 cut(s) | 705, 1029 |
| BmiI | GGNNCC | 3 cut(s) | 707, 1849, 2828 |
| BmrFI | CCNGG | 4 cut(s) | 454, 1113, 2448, 2831 |
| BmsI | GCATC | 8 cut(s) | 803, 817, 1036, 1494, 2117, 2243, 2592, 2663 |
| BpiI | GAAGAC | 1 cut(s) | 125 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1845, 1877 |
| BpmI | CTGGAG | 3 cut(s) | 1025, 2430, 2902 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2775 |
| Bpu14I | TTCGAA | 1 cut(s) | 116 |
| BpuEI | CTTGAG | 1 cut(s) | 1256 |
| Bsa29I | ATCGAT | 3 cut(s) | 389, 543, 2076 |
| BsaAI | YACGTR | 1 cut(s) | 1431 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1324 |
| BsaHI | GRCGYC | 3 cut(s) | 430, 1744, 1848 |
| BsaJI | CCNNGG | 9 cut(s) | 269, 452, 1025, 1207, 1583, 1766, 2198, 2360, 2447 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1595, 1625 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 530, 1329, 1330, 1844 |
| Bse1I | ACTGG | 7 cut(s) | 493, 1008, 1074, 1803, 2204, 2816, 2885 |
| Bse3DI | GCAATG | 1 cut(s) | 2802 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1324 |
| BseBI | CCWGG | 4 cut(s) | 454, 1113, 2448, 2831 |
| BseCI | ATCGAT | 3 cut(s) | 389, 543, 2076 |
| BseDI | CCNNGG | 9 cut(s) | 269, 452, 1025, 1207, 1583, 1766, 2198, 2360, 2447 |
| BseGI | GGATG | 6 cut(s) | 189, 289, 1470, 2068, 2133, 2158 |
| BseJI | GATNNNNATC | 1 cut(s) | 1324 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 530, 1329, 1330, 1844 |
| BseMI | GCAATG | 1 cut(s) | 2802 |
| BseMII | CTCAG | 3 cut(s) | 1157, 1631, 2553 |
| BseNI | ACTGG | 7 cut(s) | 493, 1008, 1074, 1803, 2204, 2816, 2885 |
| BseRI | GAGGAG | 1 cut(s) | 2042 |
| BseSI | GKGCMC | 1 cut(s) | 738 |
| BseXI | GCAGC | 5 cut(s) | 637, 766, 1948, 2497, 2758 |
| BsgI | GTGCAG | 1 cut(s) | 1947 |
| Bsh1236I | CGCG | 2 cut(s) | 930, 1034 |
| BshFI | GGCC | 5 cut(s) | 1206, 2157, 2203, 2541, 2834 |
| BshNI | GGYRCC | 1 cut(s) | 1847 |
| BshVI | ATCGAT | 3 cut(s) | 389, 543, 2076 |
| BsiHKAI | GWGCWC | 2 cut(s) | 538, 1973 |
| BsiHKCI | CYCGRG | 3 cut(s) | 1851, 2409, 2570 |
| BslFI | GGGAC | 2 cut(s) | 2192, 2771 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 530, 1329, 1330, 1844 |
| BsmAI | GTCTC | 2 cut(s) | 1370, 2813 |
| BsmFI | GGGAC | 2 cut(s) | 2192, 2771 |
| BsnI | GGCC | 5 cut(s) | 1206, 2157, 2203, 2541, 2834 |
| BsoBI | CYCGRG | 3 cut(s) | 1851, 2409, 2570 |
| Bsp119I | TTCGAA | 1 cut(s) | 116 |
| Bsp1286I | GDGCHC | 3 cut(s) | 538, 738, 1973 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2775 |
| Bsp19I | CCATGG | 3 cut(s) | 269, 1025, 1583 |
| BspACI | CCGC | 9 cut(s) | 181, 601, 1032, 1438, 1915, 2047, 2123, 2352, 2789 |
| BspANI | GGCC | 5 cut(s) | 1206, 2157, 2203, 2541, 2834 |
| BspCNI | CTCAG | 3 cut(s) | 1158, 1632, 2554 |
| BspDI | ATCGAT | 3 cut(s) | 389, 543, 2076 |
| BspFNI | CGCG | 2 cut(s) | 930, 1034 |
| BspHI | TCATGA | 2 cut(s) | 727, 2041 |
| BspLI | GGNNCC | 3 cut(s) | 707, 1849, 2828 |
| BspPI | GGATC | 7 cut(s) | 79, 394, 869, 1007, 1314, 2342, 2716 |
| BspT104I | TTCGAA | 1 cut(s) | 116 |
| BspT107I | GGYRCC | 1 cut(s) | 1847 |
| BspTI | CTTAAG | 1 cut(s) | 682 |
| BsrBI | CCGCTC | 1 cut(s) | 2047 |
| BsrDI | GCAATG | 1 cut(s) | 2802 |
| BsrI | ACTGG | 7 cut(s) | 493, 1008, 1074, 1803, 2204, 2816, 2885 |
| BssECI | CCNNGG | 9 cut(s) | 269, 452, 1025, 1207, 1583, 1766, 2198, 2360, 2447 |
| BssNAI | GTATAC | 1 cut(s) | 2250 |
| BssNI | GRCGYC | 3 cut(s) | 430, 1744, 1848 |
| BssT1I | CCWWGG | 7 cut(s) | 269, 1025, 1207, 1583, 1766, 2198, 2360 |
| Bst1107I | GTATAC | 1 cut(s) | 2250 |
| Bst2UI | CCWGG | 4 cut(s) | 454, 1113, 2448, 2831 |
| Bst4CI | ACNGT | 9 cut(s) | 301, 505, 841, 885, 995, 1819, 1968, 2173, 2330 |
| Bst6I | CTCTTC | 2 cut(s) | 2888, 2908 |
| BstACI | GRCGYC | 3 cut(s) | 430, 1744, 1848 |
| BstAFI | CTTAAG | 1 cut(s) | 682 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2797 |
| BstBAI | YACGTR | 1 cut(s) | 1431 |
| BstBI | TTCGAA | 1 cut(s) | 116 |
| BstC8I | GCNNGC | 9 cut(s) | 228, 1287, 2106, 2454, 2661, 2699, 2781, 2793, 2863 |
| BstDEI | CTNAG | 5 cut(s) | 1068, 1166, 1640, 2562, 2775 |
| BstDSI | CCRYGG | 3 cut(s) | 269, 1025, 1583 |
| BstF5I | GGATG | 6 cut(s) | 189, 289, 1470, 2068, 2133, 2158 |
| BstFNI | CGCG | 2 cut(s) | 930, 1034 |
| BstH2I | RGCGCY | 3 cut(s) | 626, 1573, 1851 |
| BstHHI | GCGC | 5 cut(s) | 625, 930, 1396, 1572, 1850 |
| BstMAI | GTCTC | 2 cut(s) | 1370, 2813 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 579, 620, 1893, 1934, 2660, 2754, 2768, 2780, 2797 |
| BstNI | CCWGG | 4 cut(s) | 454, 1113, 2448, 2831 |
| BstNSI | RCATGY | 8 cut(s) | 202, 1121, 1289, 1483, 1800, 2261, 2456, 2869 |
| BstSCI | CCNGG | 4 cut(s) | 452, 1111, 2446, 2829 |
| BstSLI | GKGCMC | 1 cut(s) | 738 |
| BstUI | CGCG | 2 cut(s) | 930, 1034 |
| BstV1I | GCAGC | 5 cut(s) | 637, 766, 1948, 2497, 2758 |
| BstV2I | GAAGAC | 1 cut(s) | 125 |
| BstX2I | RGATCY | 2 cut(s) | 1319, 2721 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1026 |
| BstYI | RGATCY | 2 cut(s) | 1319, 2721 |
| BstZ17I | GTATAC | 1 cut(s) | 2250 |
| Bsu15I | ATCGAT | 3 cut(s) | 389, 543, 2076 |
| BsuI | GTATCC | 1 cut(s) | 41 |
| BsuRI | GGCC | 5 cut(s) | 1206, 2157, 2203, 2541, 2834 |
| BsuTUI | ATCGAT | 3 cut(s) | 389, 543, 2076 |
| BtgI | CCRYGG | 3 cut(s) | 269, 1025, 1583 |
| BtgZI | GCGATG | 2 cut(s) | 1266, 2640 |
| BtrI | CACGTC | 1 cut(s) | 1409 |
| BtsCI | GGATG | 6 cut(s) | 189, 289, 1470, 2068, 2133, 2158 |
| BtsI | GCAGTG | 1 cut(s) | 2764 |
| BtsIMutI | CAGTG | 5 cut(s) | 1081, 1198, 1556, 1964, 2764 |
| Cac8I | GCNNGC | 9 cut(s) | 228, 1287, 2106, 2454, 2661, 2699, 2781, 2793, 2863 |
| CciI | TCATGA | 2 cut(s) | 727, 2041 |
| CfoI | GCGC | 5 cut(s) | 625, 930, 1396, 1572, 1850 |
| Cfr13I | GGNCC | 2 cut(s) | 705, 1029 |
| ClaI | ATCGAT | 3 cut(s) | 389, 543, 2076 |
| CseI | GACGC | 2 cut(s) | 419, 1733 |
| Csp6I | GTAC | 6 cut(s) | 254, 1432, 1516, 1800, 2442, 2869 |
| CviQI | GTAC | 6 cut(s) | 254, 1432, 1516, 1800, 2442, 2869 |
| DdeI | CTNAG | 5 cut(s) | 1068, 1166, 1640, 2562, 2775 |
| DinI | GGCGCC | 1 cut(s) | 1849 |
| EaeI | YGGCCR | 2 cut(s) | 2155, 2201 |
| Eam1104I | CTCTTC | 2 cut(s) | 2888, 2908 |
| EarI | CTCTTC | 2 cut(s) | 2888, 2908 |
| Ecl136II | GAGCTC | 1 cut(s) | 536 |
| Eco130I | CCWWGG | 7 cut(s) | 269, 1025, 1207, 1583, 1766, 2198, 2360 |
| Eco147I | AGGCCT | 1 cut(s) | 2834 |
| Eco24I | GRGCYC | 1 cut(s) | 538 |
| Eco47I | GGWCC | 2 cut(s) | 705, 1029 |
| Eco53kI | GAGCTC | 1 cut(s) | 536 |
| Eco57I | CTGAAG | 4 cut(s) | 456, 603, 1770, 1917 |
| Eco88I | CYCGRG | 3 cut(s) | 1851, 2409, 2570 |
| EcoICRI | GAGCTC | 1 cut(s) | 536 |
| EcoRII | CCWGG | 4 cut(s) | 452, 1111, 2446, 2829 |
| EcoT14I | CCWWGG | 7 cut(s) | 269, 1025, 1207, 1583, 1766, 2198, 2360 |
| EcoT38I | GRGCYC | 1 cut(s) | 538 |
| EgeI | GGCGCC | 1 cut(s) | 1849 |
| EheI | GGCGCC | 1 cut(s) | 1849 |
| ErhI | CCWWGG | 7 cut(s) | 269, 1025, 1207, 1583, 1766, 2198, 2360 |
| FaqI | GGGAC | 2 cut(s) | 2192, 2771 |
| FauI | CCCGC | 2 cut(s) | 2359, 2796 |
| FauNDI | CATATG | 1 cut(s) | 1464 |
| FbaI | TGATCA | 6 cut(s) | 405, 1467, 1719, 2184, 2370, 2551 |
| FblI | GTMKAC | 4 cut(s) | 370, 1684, 1996, 2249 |
| Fnu4HI | GCNGC | 6 cut(s) | 651, 780, 1962, 2048, 2511, 2772 |
| FokI | GGATG | 6 cut(s) | 176, 276, 1457, 2075, 2120, 2145 |
| FriOI | GRGCYC | 1 cut(s) | 538 |
| Fsp4HI | GCNGC | 6 cut(s) | 651, 780, 1962, 2048, 2511, 2772 |
| FspBI | CTAG | 6 cut(s) | 123, 690, 798, 1329, 2001, 2279 |
| GlaI | GCGC | 5 cut(s) | 624, 929, 1395, 1571, 1849 |
| GluI | GCNGC | 6 cut(s) | 651, 780, 1962, 2048, 2511, 2772 |
| GsuI | CTGGAG | 3 cut(s) | 1025, 2430, 2902 |
| HaeII | RGCGCY | 3 cut(s) | 626, 1573, 1851 |
| HaeIII | GGCC | 5 cut(s) | 1206, 2157, 2203, 2541, 2834 |
| HgaI | GACGC | 2 cut(s) | 419, 1733 |
| HhaI | GCGC | 5 cut(s) | 625, 930, 1396, 1572, 1850 |
| Hin1I | GRCGYC | 3 cut(s) | 430, 1744, 1848 |
| Hin6I | GCGC | 5 cut(s) | 623, 928, 1394, 1570, 1848 |
| HinP1I | GCGC | 5 cut(s) | 623, 928, 1394, 1570, 1848 |
| HincII | GTYRAC | 4 cut(s) | 508, 1822, 1997, 2533 |
| HindII | GTYRAC | 4 cut(s) | 508, 1822, 1997, 2533 |
| HindIII | AAGCTT | 2 cut(s) | 588, 1902 |
| Hpy166II | GTNNAC | 9 cut(s) | 371, 508, 940, 1685, 1822, 1997, 2250, 2533, 2642 |
| Hpy188I | TCNGA | 4 cut(s) | 386, 1167, 1221, 1641 |
| Hpy8I | GTNNAC | 9 cut(s) | 371, 508, 940, 1685, 1822, 1997, 2250, 2533, 2642 |
| Hpy99I | CGWCG | 3 cut(s) | 305, 1619, 2156 |
| HpyCH4III | ACNGT | 9 cut(s) | 301, 505, 841, 885, 995, 1819, 1968, 2173, 2330 |
| HpyCH4IV | ACGT | 8 cut(s) | 93, 420, 919, 936, 1408, 1430, 1734, 2644 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 579, 620, 1893, 1934, 2660, 2754, 2768, 2780, 2797 |
| HpyF3I | CTNAG | 5 cut(s) | 1068, 1166, 1640, 2562, 2775 |
| HpySE526I | ACGT | 8 cut(s) | 93, 420, 919, 936, 1408, 1430, 1734, 2644 |
| Hsp92I | GRCGYC | 3 cut(s) | 430, 1744, 1848 |
| HspAI | GCGC | 5 cut(s) | 623, 928, 1394, 1570, 1848 |
| KasI | GGCGCC | 1 cut(s) | 1847 |
| Ksp22I | TGATCA | 6 cut(s) | 405, 1467, 1719, 2184, 2370, 2551 |
| LmnI | GCTCC | 4 cut(s) | 285, 533, 1599, 2826 |
| Lsp1109I | GCAGC | 5 cut(s) | 637, 766, 1948, 2497, 2758 |
| LweI | GCATC | 8 cut(s) | 803, 817, 1036, 1494, 2117, 2243, 2592, 2663 |
| MaeI | CTAG | 6 cut(s) | 123, 690, 798, 1329, 2001, 2279 |
| MaeII | ACGT | 8 cut(s) | 93, 420, 919, 936, 1408, 1430, 1734, 2644 |
| MaeIII | GTNAC | 5 cut(s) | 491, 607, 986, 1805, 2645 |
| MbiI | CCGCTC | 1 cut(s) | 2047 |
| MfeI | CAATTG | 3 cut(s) | 637, 1948, 2713 |
| MflI | RGATCY | 2 cut(s) | 1319, 2721 |
| MhlI | GDGCHC | 3 cut(s) | 538, 738, 1973 |
| MlsI | TGGCCA | 1 cut(s) | 2203 |
| MluNI | TGGCCA | 1 cut(s) | 2203 |
| Mly113I | GGCGCC | 1 cut(s) | 1848 |
| MlyI | GAGTC | 3 cut(s) | 1863, 2011, 2691 |
| MmeI | TCCRAC | 4 cut(s) | 364, 1324, 2659, 2796 |
| Mox20I | TGGCCA | 1 cut(s) | 2203 |
| MroXI | GAANNNNTTC | 2 cut(s) | 339, 2271 |
| MscI | TGGCCA | 1 cut(s) | 2203 |
| MseI | TTAA | 6 cut(s) | 99, 683, 806, 1316, 2391, 2730 |
| MslI | CAYNNNNRTG | 1 cut(s) | 2805 |
| Msp20I | TGGCCA | 1 cut(s) | 2203 |
| MspA1I | CMGCKG | 1 cut(s) | 2771 |
| MspCI | CTTAAG | 1 cut(s) | 682 |
| MspR9I | CCNGG | 4 cut(s) | 454, 1113, 2448, 2831 |
| MunI | CAATTG | 3 cut(s) | 637, 1948, 2713 |
| MvaI | CCWGG | 4 cut(s) | 454, 1113, 2448, 2831 |
| MvnI | CGCG | 2 cut(s) | 930, 1034 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 579, 620, 1893, 1934, 2660, 2754, 2768, 2780, 2797 |
| NarI | GGCGCC | 1 cut(s) | 1848 |
| NcoI | CCATGG | 3 cut(s) | 269, 1025, 1583 |
| NdeI | CATATG | 1 cut(s) | 1464 |
| NlaIV | GGNNCC | 3 cut(s) | 707, 1849, 2828 |
| NmeAIII | GCCGAG | 1 cut(s) | 991 |
| NspI | RCATGY | 8 cut(s) | 202, 1121, 1289, 1483, 1800, 2261, 2456, 2869 |
| NspV | TTCGAA | 1 cut(s) | 116 |
| PaeI | GCATGC | 2 cut(s) | 1289, 2456 |
| PaeR7I | CTCGAG | 2 cut(s) | 2409, 2570 |
| PagI | TCATGA | 2 cut(s) | 727, 2041 |
| PceI | AGGCCT | 1 cut(s) | 2834 |
| PciI | ACATGT | 3 cut(s) | 198, 1479, 1796 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 113, 2416 |
| PdmI | GAANNNNTTC | 2 cut(s) | 339, 2271 |
| PfoI | TCCNGGA | 1 cut(s) | 1111 |
| PkrI | GCNGC | 6 cut(s) | 652, 781, 1963, 2049, 2512, 2773 |
| PleI | GAGTC | 3 cut(s) | 1862, 2011, 2690 |
| PluTI | GGCGCC | 1 cut(s) | 1851 |
| PpsI | GAGTC | 3 cut(s) | 1862, 2011, 2690 |
| Ppu21I | YACGTR | 1 cut(s) | 1431 |
| PscI | ACATGT | 3 cut(s) | 198, 1479, 1796 |
| PsiI | TTATAA | 1 cut(s) | 915 |
| Psp124BI | GAGCTC | 1 cut(s) | 538 |
| Psp1406I | AACGTT | 2 cut(s) | 919, 936 |
| Psp6I | CCWGG | 4 cut(s) | 452, 1111, 2446, 2829 |
| PspGI | CCWGG | 4 cut(s) | 452, 1111, 2446, 2829 |
| PspN4I | GGNNCC | 3 cut(s) | 707, 1849, 2828 |
| PspPI | GGNCC | 2 cut(s) | 705, 1029 |
| PspXI | VCTCGAGB | 2 cut(s) | 2409, 2570 |
| PsuI | RGATCY | 2 cut(s) | 1319, 2721 |
| PvuII | CAGCTG | 1 cut(s) | 2771 |
| RsaI | GTAC | 6 cut(s) | 255, 1433, 1517, 1801, 2443, 2870 |
| RsaNI | GTAC | 6 cut(s) | 254, 1432, 1516, 1800, 2442, 2869 |
| RseI | CAYNNNNRTG | 1 cut(s) | 2805 |
| SacI | GAGCTC | 1 cut(s) | 538 |
| SalI | GTCGAC | 1 cut(s) | 1995 |
| SaqAI | TTAA | 6 cut(s) | 99, 683, 806, 1316, 2391, 2730 |
| SatI | GCNGC | 6 cut(s) | 651, 780, 1962, 2048, 2511, 2772 |
| Sau96I | GGNCC | 2 cut(s) | 705, 1029 |
| ScaI | AGTACT | 1 cut(s) | 1517 |
| SchI | GAGTC | 3 cut(s) | 1863, 2011, 2691 |
| ScrFI | CCNGG | 4 cut(s) | 454, 1113, 2448, 2831 |
| SduI | GDGCHC | 3 cut(s) | 538, 738, 1973 |
| SfaNI | GCATC | 8 cut(s) | 803, 817, 1036, 1494, 2117, 2243, 2592, 2663 |
| SfoI | GGCGCC | 1 cut(s) | 1849 |
| Sfr274I | CTCGAG | 2 cut(s) | 2409, 2570 |
| SfuI | TTCGAA | 1 cut(s) | 116 |
| SinI | GGWCC | 2 cut(s) | 705, 1029 |
| SlaI | CTCGAG | 2 cut(s) | 2409, 2570 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 2805 |
| SmlI | CTYRAG | 4 cut(s) | 682, 1235, 2409, 2570 |
| SmoI | CTYRAG | 4 cut(s) | 682, 1235, 2409, 2570 |
| SphI | GCATGC | 2 cut(s) | 1289, 2456 |
| SseBI | AGGCCT | 1 cut(s) | 2834 |
| SsiI | CCGC | 9 cut(s) | 181, 601, 1032, 1438, 1915, 2047, 2123, 2352, 2789 |
| SspDI | GGCGCC | 1 cut(s) | 1847 |
| SspMI | CTAG | 6 cut(s) | 123, 690, 798, 1329, 2001, 2279 |
| SstI | GAGCTC | 1 cut(s) | 538 |
| StuI | AGGCCT | 1 cut(s) | 2834 |
| StyD4I | CCNGG | 4 cut(s) | 452, 1111, 2446, 2829 |
| StyI | CCWWGG | 7 cut(s) | 269, 1025, 1207, 1583, 1766, 2198, 2360 |
| TaaI | ACNGT | 9 cut(s) | 301, 505, 841, 885, 995, 1819, 1968, 2173, 2330 |
| TaiI | ACGT | 8 cut(s) | 96, 423, 922, 939, 1411, 1433, 1737, 2647 |
| TatI | WGTACW | 1 cut(s) | 1515 |
| TauI | GCSGC | 1 cut(s) | 2050 |
| Tru1I | TTAA | 6 cut(s) | 99, 683, 806, 1316, 2391, 2730 |
| Tru9I | TTAA | 6 cut(s) | 99, 683, 806, 1316, 2391, 2730 |
| TscAI | CASTG | 5 cut(s) | 1081, 1198, 1563, 1971, 2764 |
| TseI | GCWGC | 5 cut(s) | 650, 779, 1961, 2510, 2771 |
| TspDTI | ATGAA | 7 cut(s) | 48, 461, 713, 732, 1177, 1775, 2397 |
| TspGWI | ACGGA | 6 cut(s) | 229, 272, 388, 1586, 1603, 1702 |
| TspRI | CASTG | 5 cut(s) | 1081, 1198, 1563, 1971, 2764 |
| Vha464I | CTTAAG | 1 cut(s) | 682 |
| VpaK11BI | GGWCC | 2 cut(s) | 705, 1029 |
| XapI | RAATTY | 5 cut(s) | 153, 740, 1051, 2114, 2386 |
| XbaI | TCTAGA | 1 cut(s) | 797 |
| XceI | RCATGY | 8 cut(s) | 202, 1121, 1289, 1483, 1800, 2261, 2456, 2869 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 485, 1023 |
| XhoI | CTCGAG | 2 cut(s) | 2409, 2570 |
| XmiI | GTMKAC | 4 cut(s) | 370, 1684, 1996, 2249 |
| XmnI | GAANNNNTTC | 2 cut(s) | 339, 2271 |
| XspI | CTAG | 6 cut(s) | 123, 690, 798, 1329, 2001, 2279 |
| ZrmI | AGTACT | 1 cut(s) | 1517 |