Rmu_sc0033940.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0033940.1
OG0000142
Physical Location & Seq
Forward (+)
1 .. 781
781 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0033940.1_g000001.1.cds

Sequence Viewer

Length: 775 bp
tgaagacacagactacgacctcaagtttcgaagagaaaataataagttggatgcttcacgtagtaataagatacgttgctccggctctattaatggctggttgattatgtctgaatggacgtcgaagaagaatttgattcaccctgctaagacgacttccatcaattatttcttgaacccaatgacaggtgatcgtattaagcttccccagctgaccggaatcatcccatggagctccgcggcctcttcggatccaagatgttctgattgcattgttgcaatctctccagatctaggacgttctgatcacggtattgtagttcaagccgggacgaagttggtgttttgcaggccaggttgtcatgaatcatgccctttggaagggcaaaaacgttatatagcttacgttaaatttcatgaggatggcaagttatacgtattagaactgcctgctgatacgcatgattatatacttgttgttcttgttcttgtttctgttcctgttttagatccgttaaatcaatgtcaaggcaaaggcaggtgtgagaaaattattgcttatagggaaaagacaatattagctgcaatgccatcaggggattcgccggcccgcattgggagcccatcatttttctggtcctccaaaggtgagtttatactggtttgggagcgatattggcccggcaggaaatttcgtgccttaaagatggatgataaaagtggttataatcctgtttgggtggacttggagacgaatgatgttgctgaagacgaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

258

Amino Acids

29.07

Weight (kDa)

7.15

Isoelectric Point (pI)

35.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000142)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13532 FvH4_2g28870 FvH4_3g30930 FvH4_3g37281 FvH4_3g37300 FvH4_3g37301 FvH4_3g37301 FvH4_4g23711 FvH4_5g02330 FvH4_6g16960 FvH4_6g16971 FvH4_6g21291 FvH4_6g21331 FvH4_6g22212 FvH4_6g22332 FvH4_6g36920 FvH4_6g37552 FvH4_6g37591 FvH4_6g39721 FvH4_6g46020 FvH4_6g47001 FvH4_6g47002 FvH4_6g47130 FvH4_6g47140 FvH4_6g47161 FvH4_6g47170 FvH4_6g47190 FvH4_6g49120 FvH4_6g49280 FvH4_6g49281 FvH4_6g49640 FvH4_6g49640
malus_domestica MD03G1085600.v1.1 MD09G1027500.v1.1 MD09G1050100.v1.1
prunus_persica Prupe.1G004300_v2.0.a1 Prupe.1G016300_v2.0.a1 Prupe.1G019300_v2.0.a1 Prupe.3G239100_v2.0.a1 Prupe.3G291200_v2.0.a1
pyrus_communis pycom08g02840 pycom08g02860 pycom08g02870
rosa_chinensis RchiOBHm_Chr2g0153831 RchiOBHm_Chr2g0166171 RchiOBHm_Chr2g0166201 RchiOBHm_Chr3g0476221 RchiOBHm_Chr4g0430971 RchiOBHm_Chr5g0067081 RchiOBHm_Chr7g0197821
rosa_laevigata RLG00000001284 RLG00000006996 RLG00000012710 RLG00000019299 RLG00000020285 RLG00000020444 RLG00000020466 RLG00000020591 RLG00000020665 RLG00000020730 RLG00000020732 RLG00000021449 RLG00000021592 RLG00000021593 RLG00000021594 RLG00000021596 RLG00000021597 RLG00000021801 RLG00000023534 RLG00000023538 RLG00000023693 RLG00000023694 RLG00000023699 RLG00000024196 RLG00000024214 RLG00000024220 RLG00000024244 RLG00000024608 RLG00000024612 RLG00000035157 RLG00000035906
rosa_multiflora Rmu_co8282815.1_g000001 Rmu_co8380495.1_g000001 Rmu_co8381111.1_g000001 Rmu_co8460513.1_g000001 Rmu_co8481947.1_g000001 Rmu_co8487937.1_g000001 Rmu_sc0000151.1_g000017 Rmu_sc0001427.1_g000003 Rmu_sc0001427.1_g000006 Rmu_sc0002611.1_g000008 Rmu_sc0003887.1_g000018 Rmu_sc0003887.1_g000019 Rmu_sc0003887.1_g000021 Rmu_sc0004119.1_g000004 Rmu_sc0004329.1_g000003 Rmu_sc0004485.1_g000024 Rmu_sc0005290.1_g000001 Rmu_sc0005609.1_g000006 Rmu_sc0006187.1_g000018 Rmu_sc0006218.1_g000032 Rmu_sc0006218.1_g000033 Rmu_sc0007150.1_g000003 Rmu_sc0007154.1_g000004 Rmu_sc0007154.1_g000005 Rmu_sc0007154.1_g000007 Rmu_sc0008314.1_g000012 Rmu_sc0010073.1_g000023 Rmu_sc0010073.1_g000025 Rmu_sc0011216.1_g000008 Rmu_sc0012445.1_g000005 Rmu_sc0013571.1_g000002 Rmu_sc0018648.1_g000002 Rmu_sc0020961.1_g000002 Rmu_sc0020961.1_g000003 Rmu_sc0023710.1_g000001 Rmu_sc0031310.1_g000008 Rmu_sc0033940.1_g000001 Rmu_sc0035493.1_g000001 Rmu_sc0039285.1_g000001
rosa_roxburghii Rroxscaffold_1G00014000 Rroxscaffold_1G00014020 Rroxscaffold_2G00082760 Rroxscaffold_2G00085090 Rroxscaffold_2G00085100 Rroxscaffold_2G00085140 Rroxscaffold_2G00086670 Rroxscaffold_2G00086680 Rroxscaffold_2G00098190 Rroxscaffold_2G00099270 Rroxscaffold_3G00227460 Rroxscaffold_3G00258190 Rroxscaffold_3G00259780 Rroxscaffold_6G00402940 Rroxscaffold_6G00410200 Rroxscaffold_6G00410210 Rroxscaffold_7G00184320
rosa_rugosa Rorug02G0416100 Rorug02G0416200 Rorug02G0520900 Rorug02G0521200 Rorug02G0521300 Rorug02G0534600 Rorug03G0116300 Rorug03G0162900 Rorug03G0162900 Rorug04G0241400 Rorug05G0380900 Rorug07G0043800
rosa_samantha Rh1AG115300 Rh2BG483700 Rh2BG509900 Rh2BG515700 Rh2BG515800 Rh2BG586500 Rh2BG586600 Rh2BG586700 Rh2BG598800 Rh2BG598900 Rh2BG599100 Rh2BG618400 Rh2BG630500 Rh2CG457400 Rh2CG484900 Rh3AG165300 Rh3AG212900 Rh3AG213300 Rh3BG145800 Rh3BG146100 Rh3BG235300 Rh3BG246500 Rh3BG247000 Rh3BG247100 Rh3CG240300 Rh3CG240800 Rh3CG240900 Rh3CG259600 Rh3DG147000 Rh3DG184800 Rh3DG184900 Rh3DG185000 Rh3DG239500 Rh3DG240100 Rh3DG240200 Rh3DG255800 Rh5BG458500 Rh5CG480400 Rh7BG170400 Rh7BG407900 Rh7CG176900
rosa_wichuraiana Rw2G038990 Rw2G041550 Rw2G047660 Rw2G048940 Rw4G026370 Rw6G008730 Rw7G014600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 727
AarI CACCTGC 1 cut(s) 529
AatII GACGTC 1 cut(s) 123
Acc36I ACCTGC 1 cut(s) 529
AccII CGCG 1 cut(s) 240
AciI CCGC 3 cut(s) 238, 240, 611
AclI AACGTT 1 cut(s) 392
AclWI GGATC 3 cut(s) 246, 259, 504
AcsI RAATTY 3 cut(s) 131, 411, 690
AcyI GRCGYC 1 cut(s) 120
AfiI CCNNNNNNNGG 4 cut(s) 186, 294, 381, 616
AgsI TTSAA 2 cut(s) 176, 324
AjnI CCWGG 1 cut(s) 353
AluBI AGCT 5 cut(s) 203, 212, 235, 402, 582
AluI AGCT 5 cut(s) 203, 212, 235, 402, 582
Alw21I GWGCWC 1 cut(s) 237
Alw26I GTCTC 1 cut(s) 744
AlwI GGATC 3 cut(s) 246, 259, 504
AoxI GGCC 4 cut(s) 241, 351, 607, 678
ApeKI GCWGC 1 cut(s) 582
ApoI RAATTY 3 cut(s) 131, 411, 690
AseI ATTAAT 1 cut(s) 91
AspS9I GGNCC 3 cut(s) 608, 637, 679
AsuC2I CCSGG 2 cut(s) 329, 682
AsuHPI GGTGA 3 cut(s) 132, 201, 660
AsuII TTCGAA 1 cut(s) 29
AvaII GGWCC 1 cut(s) 637
BamHI GGATCC 1 cut(s) 251
BanII GRGCYC 2 cut(s) 237, 624
BbsI GAAGAC 1 cut(s) 10
Bbv12I GWGCWC 1 cut(s) 237
BbvI GCAGC 1 cut(s) 569
BccI CCATC 5 cut(s) 168, 417, 599, 632, 701
BciT130I CCWGG 1 cut(s) 355
BclI TGATCA 1 cut(s) 305
BcnI CCSGG 2 cut(s) 329, 682
BcoDI GTCTC 1 cut(s) 744
BfaI CTAG 1 cut(s) 294
BfuAI ACCTGC 1 cut(s) 529
BglII AGATCT 1 cut(s) 290
BisI GCNGC 2 cut(s) 241, 583
BlsI GCNGC 2 cut(s) 242, 584
Bme1390I CCNGG 3 cut(s) 329, 355, 682
Bme18I GGWCC 1 cut(s) 637
BmgT120I GGNCC 3 cut(s) 608, 637, 679
BmiI GGNNCC 2 cut(s) 253, 621
BmrFI CCNGG 3 cut(s) 329, 355, 682
BmsI GCATC 1 cut(s) 41
BpiI GAAGAC 1 cut(s) 10
BpmI CTGGAG 1 cut(s) 271
Bpu14I TTCGAA 1 cut(s) 29
BpuEI CTTGAG 1 cut(s) 6
BpuMI CCSGG 2 cut(s) 329, 682
BsaAI YACGTR 2 cut(s) 60, 437
BsaHI GRCGYC 1 cut(s) 120
BsaJI CCNNGG 2 cut(s) 228, 238
BsaWI WCCGGW 1 cut(s) 216
Bsc4I CCNNNNNNNGG 4 cut(s) 186, 294, 381, 616
Bse118I RCCGGY 1 cut(s) 605
Bse1I ACTGG 1 cut(s) 664
Bse3DI GCAATG 1 cut(s) 592
BseBI CCWGG 1 cut(s) 355
BseDI CCNNGG 2 cut(s) 228, 238
BseGI GGATG 4 cut(s) 56, 223, 428, 716
BseLI CCNNNNNNNGG 4 cut(s) 186, 294, 381, 616
BseMI GCAATG 1 cut(s) 592
BseNI ACTGG 1 cut(s) 664
BseXI GCAGC 1 cut(s) 569
BseYI CCCAGC 1 cut(s) 208
Bsh1236I CGCG 1 cut(s) 240
BshFI GGCC 4 cut(s) 243, 353, 609, 680
BsiHKAI GWGCWC 1 cut(s) 237
BsiSI CCGG 5 cut(s) 82, 217, 328, 606, 682
BslFI GGGAC 1 cut(s) 344
BslI CCNNNNNNNGG 4 cut(s) 186, 294, 381, 616
BsmAI GTCTC 1 cut(s) 744
BsmBI CGTCTC 1 cut(s) 744
BsmFI GGGAC 1 cut(s) 344
BsnI GGCC 4 cut(s) 243, 353, 609, 680
Bsp119I TTCGAA 1 cut(s) 29
Bsp1286I GDGCHC 2 cut(s) 237, 624
Bsp143I GATC 5 cut(s) 191, 251, 290, 305, 509
Bsp19I CCATGG 1 cut(s) 228
BspACI CCGC 3 cut(s) 238, 240, 611
BspANI GGCC 4 cut(s) 243, 353, 609, 680
BspFNI CGCG 1 cut(s) 240
BspHI TCATGA 2 cut(s) 362, 416
BspLI GGNNCC 2 cut(s) 253, 621
BspMI ACCTGC 1 cut(s) 529
BspPI GGATC 3 cut(s) 246, 259, 504
BspT104I TTCGAA 1 cut(s) 29
BsrDI GCAATG 1 cut(s) 592
BsrFI RCCGGY 1 cut(s) 605
BsrI ACTGG 1 cut(s) 664
BssAI RCCGGY 1 cut(s) 605
BssECI CCNNGG 2 cut(s) 228, 238
BssMI GATC 5 cut(s) 191, 251, 290, 305, 509
BssNI GRCGYC 1 cut(s) 120
BssT1I CCWWGG 1 cut(s) 228
Bst2UI CCWGG 1 cut(s) 355
Bst4CI ACNGT 1 cut(s) 312
Bst6I CTCTTC 2 cut(s) 26, 251
BstACI GRCGYC 1 cut(s) 120
BstBAI YACGTR 2 cut(s) 60, 437
BstBI TTCGAA 1 cut(s) 29
BstC8I GCNNGC 4 cut(s) 351, 451, 607, 611
BstDEI CTNAG 1 cut(s) 148
BstDSI CCRYGG 2 cut(s) 228, 238
BstENI CCTNNNNNAGG 1 cut(s) 379
BstF5I GGATG 4 cut(s) 56, 223, 428, 716
BstFNI CGCG 1 cut(s) 240
BstKTI GATC 5 cut(s) 194, 254, 293, 308, 512
BstMAI GTCTC 1 cut(s) 744
BstMBI GATC 5 cut(s) 191, 251, 290, 305, 509
BstMWI GCNNNNNNNGC 3 cut(s) 209, 619, 677
BstNI CCWGG 1 cut(s) 355
BstSCI CCNGG 3 cut(s) 327, 353, 680
BstSNI TACGTA 1 cut(s) 437
BstUI CGCG 1 cut(s) 240
BstV1I GCAGC 1 cut(s) 569
BstV2I GAAGAC 1 cut(s) 10
BstX2I RGATCY 3 cut(s) 251, 290, 509
BstYI RGATCY 3 cut(s) 251, 290, 509
BsuRI GGCC 4 cut(s) 243, 353, 609, 680
BtgI CCRYGG 2 cut(s) 228, 238
BtsCI GGATG 4 cut(s) 56, 223, 428, 716
BveI ACCTGC 1 cut(s) 529
Cac8I GCNNGC 4 cut(s) 351, 451, 607, 611
CciI TCATGA 2 cut(s) 362, 416
Cfr10I RCCGGY 1 cut(s) 605
Cfr13I GGNCC 3 cut(s) 608, 637, 679
Cfr42I CCGCGG 1 cut(s) 241
CviAII CATG 5 cut(s) 229, 363, 370, 417, 462
DdeI CTNAG 1 cut(s) 148
DpnI GATC 5 cut(s) 193, 253, 292, 307, 511
DpnII GATC 5 cut(s) 191, 251, 290, 305, 509
Eam1104I CTCTTC 2 cut(s) 26, 251
EarI CTCTTC 2 cut(s) 26, 251
Ecl136II GAGCTC 1 cut(s) 235
Eco105I TACGTA 1 cut(s) 437
Eco130I CCWWGG 1 cut(s) 228
Eco24I GRGCYC 2 cut(s) 237, 624
Eco47I GGWCC 1 cut(s) 637
Eco53kI GAGCTC 1 cut(s) 235
EcoICRI GAGCTC 1 cut(s) 235
EcoNI CCTNNNNNAGG 1 cut(s) 379
EcoRII CCWGG 1 cut(s) 353
EcoT14I CCWWGG 1 cut(s) 228
EcoT38I GRGCYC 2 cut(s) 237, 624
ErhI CCWWGG 1 cut(s) 228
Esp3I CGTCTC 1 cut(s) 744
FaeI CATG 5 cut(s) 232, 366, 373, 420, 465
FaqI GGGAC 1 cut(s) 344
FatI CATG 5 cut(s) 228, 362, 369, 416, 461
FauI CCCGC 1 cut(s) 618
FbaI TGATCA 1 cut(s) 305
Fnu4HI GCNGC 2 cut(s) 241, 583
FokI GGATG 4 cut(s) 63, 210, 435, 723
FriOI GRGCYC 2 cut(s) 237, 624
Fsp4HI GCNGC 2 cut(s) 241, 583
FspBI CTAG 1 cut(s) 294
GluI GCNGC 2 cut(s) 241, 583
GsaI CCCAGC 1 cut(s) 212
GsuI CTGGAG 1 cut(s) 271
HaeIII GGCC 4 cut(s) 243, 353, 609, 680
HapII CCGG 5 cut(s) 82, 217, 328, 606, 682
Hin1I GRCGYC 1 cut(s) 120
Hin1II CATG 5 cut(s) 232, 366, 373, 420, 465
HindIII AAGCTT 1 cut(s) 201
HinfI GANTC 4 cut(s) 137, 220, 366, 600
HpaII CCGG 5 cut(s) 82, 217, 328, 606, 682
HphI GGTGA 3 cut(s) 132, 201, 660
Hpy166II GTNNAC 1 cut(s) 743
Hpy188I TCNGA 4 cut(s) 113, 251, 266, 305
Hpy188III TCNNGA 4 cut(s) 173, 288, 363, 417
Hpy8I GTNNAC 1 cut(s) 743
Hpy99I CGWCG 1 cut(s) 125
HpyAV CCTTC 1 cut(s) 375
HpyCH4III ACNGT 1 cut(s) 312
HpyCH4IV ACGT 7 cut(s) 59, 74, 120, 299, 392, 406, 436
HpyCH4V TGCA 4 cut(s) 271, 279, 349, 585
HpyF10VI GCNNNNNNNGC 3 cut(s) 209, 619, 677
HpyF3I CTNAG 1 cut(s) 148
HpySE526I ACGT 7 cut(s) 59, 74, 120, 299, 392, 406, 436
Hsp92I GRCGYC 1 cut(s) 120
Hsp92II CATG 5 cut(s) 232, 366, 373, 420, 465
KroI GCCGGC 1 cut(s) 605
KroNI GCCGGC 1 cut(s) 607
Ksp22I TGATCA 1 cut(s) 305
KspI CCGCGG 1 cut(s) 241
Kzo9I GATC 5 cut(s) 191, 251, 290, 305, 509
LmnI GCTCC 5 cut(s) 84, 232, 240, 619, 668
Lsp1109I GCAGC 1 cut(s) 569
LweI GCATC 1 cut(s) 41
MaeI CTAG 1 cut(s) 294
MaeII ACGT 7 cut(s) 59, 74, 120, 299, 392, 406, 436
MalI GATC 5 cut(s) 193, 253, 292, 307, 511
MboI GATC 5 cut(s) 191, 251, 290, 305, 509
MboII GAAGA 5 cut(s) 15, 43, 137, 140, 238
MflI RGATCY 3 cut(s) 251, 290, 509
MhlI GDGCHC 2 cut(s) 237, 624
MluCI AATT 5 cut(s) 131, 164, 411, 550, 690
MmeI TCCRAC 1 cut(s) 28
MnlI CCTC 4 cut(s) 30, 254, 413, 650
MroNI GCCGGC 1 cut(s) 605
MseI TTAA 5 cut(s) 91, 199, 409, 516, 702
MslI CAYNNNNRTG 1 cut(s) 421
MspA1I CMGCKG 2 cut(s) 212, 240
MspI CCGG 5 cut(s) 82, 217, 328, 606, 682
MspR9I CCNGG 3 cut(s) 329, 355, 682
MvaI CCWGG 1 cut(s) 355
MvnI CGCG 1 cut(s) 240
MwoI GCNNNNNNNGC 3 cut(s) 209, 619, 677
NaeI GCCGGC 1 cut(s) 607
NciI CCSGG 2 cut(s) 329, 682
NcoI CCATGG 1 cut(s) 228
NdeII GATC 5 cut(s) 191, 251, 290, 305, 509
NgoMIV GCCGGC 1 cut(s) 605
NlaIII CATG 5 cut(s) 232, 366, 373, 420, 465
NlaIV GGNNCC 2 cut(s) 253, 621
NspV TTCGAA 1 cut(s) 29
PagI TCATGA 2 cut(s) 362, 416
PaqCI CACCTGC 1 cut(s) 529
PdiI GCCGGC 1 cut(s) 607
PfeI GAWTC 4 cut(s) 137, 220, 366, 600
PkrI GCNGC 2 cut(s) 242, 584
Ppu21I YACGTR 2 cut(s) 60, 437
PshBI ATTAAT 1 cut(s) 91
PsiI TTATAA 1 cut(s) 727
Psp124BI GAGCTC 1 cut(s) 237
Psp1406I AACGTT 1 cut(s) 392
Psp6I CCWGG 1 cut(s) 353
PspFI CCCAGC 1 cut(s) 208
PspGI CCWGG 1 cut(s) 353
PspN4I GGNNCC 2 cut(s) 253, 621
PspPI GGNCC 3 cut(s) 608, 637, 679
PsuI RGATCY 3 cut(s) 251, 290, 509
PvuII CAGCTG 1 cut(s) 212
RseI CAYNNNNRTG 1 cut(s) 421
SacI GAGCTC 1 cut(s) 237
SacII CCGCGG 1 cut(s) 241
SaqAI TTAA 5 cut(s) 91, 199, 409, 516, 702
SatI GCNGC 2 cut(s) 241, 583
Sau3AI GATC 5 cut(s) 191, 251, 290, 305, 509
Sau96I GGNCC 3 cut(s) 608, 637, 679
ScrFI CCNGG 3 cut(s) 329, 355, 682
SduI GDGCHC 2 cut(s) 237, 624
SfaNI GCATC 1 cut(s) 41
Sfr303I CCGCGG 1 cut(s) 241
SfuI TTCGAA 1 cut(s) 29
SgrBI CCGCGG 1 cut(s) 241
SinI GGWCC 1 cut(s) 637
SmiMI CAYNNNNRTG 1 cut(s) 421
SmlI CTYRAG 1 cut(s) 21
SmoI CTYRAG 1 cut(s) 21
SnaBI TACGTA 1 cut(s) 437
Sse9I AATT 5 cut(s) 131, 164, 411, 550, 690
SsiI CCGC 3 cut(s) 238, 240, 611
SspI AATATT 1 cut(s) 577
SspMI CTAG 1 cut(s) 294
SstI GAGCTC 1 cut(s) 237
StyD4I CCNGG 3 cut(s) 327, 353, 680
StyI CCWWGG 1 cut(s) 228
TaaI ACNGT 1 cut(s) 312
TaiI ACGT 7 cut(s) 62, 77, 123, 302, 395, 409, 439
TaqI TCGA 2 cut(s) 29, 123
TasI AATT 5 cut(s) 131, 164, 411, 550, 690
TauI GCSGC 1 cut(s) 243
TfiI GAWTC 4 cut(s) 137, 220, 366, 600
Tru1I TTAA 5 cut(s) 91, 199, 409, 516, 702
Tru9I TTAA 5 cut(s) 91, 199, 409, 516, 702
TseI GCWGC 1 cut(s) 582
TspDTI ATGAA 2 cut(s) 379, 405
TspGWI ACGGA 1 cut(s) 502
VpaK11BI GGWCC 1 cut(s) 637
VspI ATTAAT 1 cut(s) 91
XagI CCTNNNNNAGG 1 cut(s) 379
XapI RAATTY 3 cut(s) 131, 411, 690
XcmI CCANNNNNNNNNTGG 1 cut(s) 631
XspI CTAG 1 cut(s) 294
ZraI GACGTC 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.