Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 1312 |
| AciI | CCGC | 3 cut(s) | 187, 566, 1312 |
| AclWI | GGATC | 4 cut(s) | 293, 386, 779, 948 |
| AcsI | RAATTY | 2 cut(s) | 693, 924 |
| AcuI | CTGAAG | 1 cut(s) | 936 |
| AfaI | GTAC | 3 cut(s) | 229, 552, 737 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 88 |
| AflII | CTTAAG | 1 cut(s) | 209 |
| AjnI | CCWGG | 1 cut(s) | 649 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 699, 731, 747, 779 |
| AluBI | AGCT | 3 cut(s) | 23, 1132, 1253 |
| AluI | AGCT | 3 cut(s) | 23, 1132, 1253 |
| Alw21I | GWGCWC | 1 cut(s) | 523 |
| Alw26I | GTCTC | 4 cut(s) | 136, 338, 881, 1040 |
| AlwI | GGATC | 4 cut(s) | 293, 386, 779, 948 |
| Ama87I | CYCGRG | 1 cut(s) | 580 |
| AoxI | GGCC | 3 cut(s) | 567, 647, 679 |
| ApeKI | GCWGC | 2 cut(s) | 15, 532 |
| ApoI | RAATTY | 2 cut(s) | 693, 924 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 128, 160 |
| AspLEI | GCGC | 1 cut(s) | 1312 |
| AspS9I | GGNCC | 1 cut(s) | 680 |
| AsuHPI | GGTGA | 3 cut(s) | 116, 665, 932 |
| AvaI | CYCGRG | 1 cut(s) | 580 |
| BaeGI | GKGCMC | 1 cut(s) | 115 |
| BbsI | GAAGAC | 2 cut(s) | 357, 1065 |
| Bbv12I | GWGCWC | 1 cut(s) | 523 |
| BbvI | GCAGC | 2 cut(s) | 27, 519 |
| BccI | CCATC | 7 cut(s) | 20, 95, 422, 477, 719, 1250, 1289 |
| BceAI | ACGGC | 1 cut(s) | 66 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 378, 412 |
| BciT130I | CCWGG | 1 cut(s) | 651 |
| BcoDI | GTCTC | 4 cut(s) | 136, 338, 881, 1040 |
| BfaI | CTAG | 2 cut(s) | 471, 791 |
| BfmI | CTRYAG | 3 cut(s) | 328, 337, 387 |
| BfrI | CTTAAG | 1 cut(s) | 209 |
| BglII | AGATCT | 2 cut(s) | 584, 819 |
| BisI | GCNGC | 3 cut(s) | 16, 533, 567 |
| BlsI | GCNGC | 3 cut(s) | 17, 534, 568 |
| Bme1390I | CCNGG | 1 cut(s) | 651 |
| BmeT110I | CYCGRG | 1 cut(s) | 580 |
| BmgT120I | GGNCC | 1 cut(s) | 680 |
| BmiI | GGNNCC | 2 cut(s) | 682, 1032 |
| BmrFI | CCNGG | 1 cut(s) | 651 |
| BmsI | GCATC | 4 cut(s) | 498, 982, 1248, 1297 |
| BpiI | GAAGAC | 2 cut(s) | 357, 1065 |
| BpuEI | CTTGAG | 1 cut(s) | 905 |
| BsaAI | YACGTR | 1 cut(s) | 826 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1238 |
| BsaI | GGTCTC | 1 cut(s) | 136 |
| BsaJI | CCNNGG | 2 cut(s) | 115, 281 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 88 |
| Bse1I | ACTGG | 2 cut(s) | 1137, 1225 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1238 |
| BseBI | CCWGG | 1 cut(s) | 651 |
| BseDI | CCNNGG | 2 cut(s) | 115, 281 |
| BseGI | GGATG | 2 cut(s) | 488, 730 |
| BseJI | GATNNNNATC | 1 cut(s) | 1238 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 88 |
| BseMII | CTCAG | 2 cut(s) | 138, 1026 |
| BseNI | ACTGG | 2 cut(s) | 1137, 1225 |
| BseRI | GAGGAG | 1 cut(s) | 562 |
| BseSI | GKGCMC | 1 cut(s) | 115 |
| BseXI | GCAGC | 2 cut(s) | 27, 519 |
| BsgI | GTGCAG | 1 cut(s) | 306 |
| Bsh1236I | CGCG | 1 cut(s) | 1312 |
| BshFI | GGCC | 3 cut(s) | 569, 649, 681 |
| BsiHKAI | GWGCWC | 1 cut(s) | 523 |
| BsiHKCI | CYCGRG | 1 cut(s) | 580 |
| BslFI | GGGAC | 1 cut(s) | 451 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 88 |
| BsmAI | GTCTC | 4 cut(s) | 136, 338, 881, 1040 |
| BsmFI | GGGAC | 1 cut(s) | 451 |
| BsnI | GGCC | 3 cut(s) | 569, 649, 681 |
| Bso31I | GGTCTC | 1 cut(s) | 136 |
| BsoBI | CYCGRG | 1 cut(s) | 580 |
| Bsp1286I | GDGCHC | 2 cut(s) | 115, 523 |
| Bsp143I | GATC | 6 cut(s) | 285, 391, 584, 784, 819, 940 |
| Bsp19I | CCATGG | 2 cut(s) | 115, 281 |
| BspACI | CCGC | 3 cut(s) | 187, 566, 1312 |
| BspANI | GGCC | 3 cut(s) | 569, 649, 681 |
| BspCNI | CTCAG | 2 cut(s) | 139, 1027 |
| BspFNI | CGCG | 1 cut(s) | 1312 |
| BspHI | TCATGA | 2 cut(s) | 703, 903 |
| BspLI | GGNNCC | 2 cut(s) | 682, 1032 |
| BspMAI | CTGCAG | 1 cut(s) | 391 |
| BspPI | GGATC | 4 cut(s) | 293, 386, 779, 948 |
| BspQI | GCTCTTC | 1 cut(s) | 235 |
| BspTI | CTTAAG | 1 cut(s) | 209 |
| BspTNI | GGTCTC | 1 cut(s) | 136 |
| BsrI | ACTGG | 2 cut(s) | 1137, 1225 |
| BssECI | CCNNGG | 2 cut(s) | 115, 281 |
| BssMI | GATC | 6 cut(s) | 285, 391, 584, 784, 819, 940 |
| BssT1I | CCWWGG | 2 cut(s) | 115, 281 |
| Bst2UI | CCWGG | 1 cut(s) | 651 |
| Bst4CI | ACNGT | 2 cut(s) | 356, 1153 |
| Bst6I | CTCTTC | 1 cut(s) | 235 |
| BstAFI | CTTAAG | 1 cut(s) | 209 |
| BstBAI | YACGTR | 1 cut(s) | 826 |
| BstC8I | GCNNGC | 2 cut(s) | 647, 833 |
| BstDEI | CTNAG | 4 cut(s) | 36, 147, 1035, 1249 |
| BstDSI | CCRYGG | 2 cut(s) | 115, 281 |
| BstF5I | GGATG | 2 cut(s) | 488, 730 |
| BstFNI | CGCG | 1 cut(s) | 1312 |
| BstHHI | GCGC | 1 cut(s) | 1312 |
| BstKTI | GATC | 6 cut(s) | 288, 394, 587, 787, 822, 943 |
| BstMAI | GTCTC | 4 cut(s) | 136, 338, 881, 1040 |
| BstMBI | GATC | 6 cut(s) | 285, 391, 584, 784, 819, 940 |
| BstNI | CCWGG | 1 cut(s) | 651 |
| BstSCI | CCNGG | 1 cut(s) | 649 |
| BstSFI | CTRYAG | 3 cut(s) | 328, 337, 387 |
| BstSLI | GKGCMC | 1 cut(s) | 115 |
| BstSNI | TACGTA | 1 cut(s) | 826 |
| BstUI | CGCG | 1 cut(s) | 1312 |
| BstV1I | GCAGC | 2 cut(s) | 27, 519 |
| BstV2I | GAAGAC | 2 cut(s) | 357, 1065 |
| BstX2I | RGATCY | 4 cut(s) | 285, 391, 584, 819 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 725 |
| BstYI | RGATCY | 4 cut(s) | 285, 391, 584, 819 |
| BsuRI | GGCC | 3 cut(s) | 569, 649, 681 |
| BtgI | CCRYGG | 2 cut(s) | 115, 281 |
| BtsCI | GGATG | 2 cut(s) | 488, 730 |
| BtsIMutI | CAGTG | 3 cut(s) | 361, 1149, 1218 |
| Cac8I | GCNNGC | 2 cut(s) | 647, 833 |
| CciI | TCATGA | 2 cut(s) | 703, 903 |
| CfoI | GCGC | 1 cut(s) | 1312 |
| Cfr13I | GGNCC | 1 cut(s) | 680 |
| CseI | GACGC | 1 cut(s) | 234 |
| Csp6I | GTAC | 3 cut(s) | 228, 551, 736 |
| CviAII | CATG | 6 cut(s) | 116, 234, 282, 663, 704, 904 |
| CviJI | RGCY | 8 cut(s) | 23, 569, 649, 681, 809, 1026, 1132, 1253 |
| CviKI_1 | RGCY | 8 cut(s) | 23, 569, 649, 681, 809, 1026, 1132, 1253 |
| CviQI | GTAC | 3 cut(s) | 228, 551, 736 |
| DdeI | CTNAG | 4 cut(s) | 36, 147, 1035, 1249 |
| DpnI | GATC | 6 cut(s) | 287, 393, 586, 786, 821, 942 |
| DpnII | GATC | 6 cut(s) | 285, 391, 584, 784, 819, 940 |
| Eam1104I | CTCTTC | 1 cut(s) | 235 |
| EarI | CTCTTC | 1 cut(s) | 235 |
| Eco105I | TACGTA | 1 cut(s) | 826 |
| Eco130I | CCWWGG | 2 cut(s) | 115, 281 |
| Eco31I | GGTCTC | 1 cut(s) | 136 |
| Eco32I | GATATC | 2 cut(s) | 561, 1111 |
| Eco57I | CTGAAG | 1 cut(s) | 936 |
| Eco88I | CYCGRG | 1 cut(s) | 580 |
| EcoO109I | RGGNCCY | 1 cut(s) | 680 |
| EcoRI | GAATTC | 1 cut(s) | 693 |
| EcoRII | CCWGG | 1 cut(s) | 649 |
| EcoRV | GATATC | 2 cut(s) | 561, 1111 |
| EcoT14I | CCWWGG | 2 cut(s) | 115, 281 |
| ErhI | CCWWGG | 2 cut(s) | 115, 281 |
| FaeI | CATG | 6 cut(s) | 119, 237, 285, 666, 707, 907 |
| FaqI | GGGAC | 1 cut(s) | 451 |
| FatI | CATG | 6 cut(s) | 115, 233, 281, 662, 703, 903 |
| FauI | CCCGC | 1 cut(s) | 1305 |
| Fnu4HI | GCNGC | 3 cut(s) | 16, 533, 567 |
| FokI | GGATG | 2 cut(s) | 495, 737 |
| Fsp4HI | GCNGC | 3 cut(s) | 16, 533, 567 |
| FspBI | CTAG | 2 cut(s) | 471, 791 |
| GlaI | GCGC | 1 cut(s) | 1311 |
| GluI | GCNGC | 3 cut(s) | 16, 533, 567 |
| HaeIII | GGCC | 3 cut(s) | 569, 649, 681 |
| HgaI | GACGC | 1 cut(s) | 234 |
| HhaI | GCGC | 1 cut(s) | 1312 |
| Hin1II | CATG | 6 cut(s) | 119, 237, 285, 666, 707, 907 |
| Hin6I | GCGC | 1 cut(s) | 1310 |
| HinP1I | GCGC | 1 cut(s) | 1310 |
| HincII | GTYRAC | 3 cut(s) | 263, 1041, 1149 |
| HindII | GTYRAC | 3 cut(s) | 263, 1041, 1149 |
| HinfI | GANTC | 6 cut(s) | 203, 311, 505, 985, 1117, 1179 |
| HphI | GGTGA | 3 cut(s) | 116, 665, 932 |
| Hpy166II | GTNNAC | 5 cut(s) | 228, 263, 310, 1041, 1149 |
| Hpy188I | TCNGA | 7 cut(s) | 148, 510, 819, 916, 1030, 1184, 1344 |
| Hpy8I | GTNNAC | 5 cut(s) | 228, 263, 310, 1041, 1149 |
| Hpy99I | CGWCG | 2 cut(s) | 87, 250 |
| HpyAV | CCTTC | 3 cut(s) | 405, 911, 1153 |
| HpyCH4III | ACNGT | 2 cut(s) | 356, 1153 |
| HpyCH4IV | ACGT | 2 cut(s) | 371, 825 |
| HpyCH4V | TGCA | 9 cut(s) | 15, 323, 389, 597, 645, 982, 1082, 1197, 1208 |
| HpyF3I | CTNAG | 4 cut(s) | 36, 147, 1035, 1249 |
| HpySE526I | ACGT | 2 cut(s) | 371, 825 |
| Hsp92II | CATG | 6 cut(s) | 119, 237, 285, 666, 707, 907 |
| HspAI | GCGC | 1 cut(s) | 1310 |
| Kzo9I | GATC | 6 cut(s) | 285, 391, 584, 784, 819, 940 |
| LguI | GCTCTTC | 1 cut(s) | 235 |
| LmnI | GCTCC | 2 cut(s) | 486, 1000 |
| Lsp1109I | GCAGC | 2 cut(s) | 27, 519 |
| LweI | GCATC | 4 cut(s) | 498, 982, 1248, 1297 |
| MaeI | CTAG | 2 cut(s) | 471, 791 |
| MaeII | ACGT | 2 cut(s) | 371, 825 |
| MaeIII | GTNAC | 1 cut(s) | 653 |
| MalI | GATC | 6 cut(s) | 287, 393, 586, 786, 821, 942 |
| MboI | GATC | 6 cut(s) | 285, 391, 584, 784, 819, 940 |
| MboII | GAAGA | 6 cut(s) | 146, 252, 362, 579, 1063, 1070 |
| MflI | RGATCY | 4 cut(s) | 285, 391, 584, 819 |
| MhlI | GDGCHC | 2 cut(s) | 115, 523 |
| MluCI | AATT | 9 cut(s) | 92, 364, 525, 693, 713, 836, 855, 924, 1285 |
| MlyI | GAGTC | 2 cut(s) | 305, 1173 |
| MmeI | TCCRAC | 1 cut(s) | 826 |
| MnlI | CCTC | 6 cut(s) | 241, 550, 580, 583, 787, 1178 |
| MseI | TTAA | 4 cut(s) | 210, 854, 1173, 1354 |
| MslI | CAYNNNNRTG | 2 cut(s) | 702, 723 |
| MspCI | CTTAAG | 1 cut(s) | 209 |
| MspR9I | CCNGG | 1 cut(s) | 651 |
| MvaI | CCWGG | 1 cut(s) | 651 |
| MvnI | CGCG | 1 cut(s) | 1312 |
| NcoI | CCATGG | 2 cut(s) | 115, 281 |
| NdeII | GATC | 6 cut(s) | 285, 391, 584, 784, 819, 940 |
| NlaIII | CATG | 6 cut(s) | 119, 237, 285, 666, 707, 907 |
| NlaIV | GGNNCC | 2 cut(s) | 682, 1032 |
| NmeAIII | GCCGAG | 1 cut(s) | 293 |
| NmuCI | GTSAC | 1 cut(s) | 653 |
| PagI | TCATGA | 2 cut(s) | 703, 903 |
| PciSI | GCTCTTC | 1 cut(s) | 235 |
| PfeI | GAWTC | 4 cut(s) | 203, 505, 985, 1117 |
| PflFI | GACNNNGTC | 1 cut(s) | 356 |
| PkrI | GCNGC | 3 cut(s) | 17, 534, 568 |
| PleI | GAGTC | 2 cut(s) | 305, 1173 |
| PpsI | GAGTC | 2 cut(s) | 305, 1173 |
| Ppu21I | YACGTR | 1 cut(s) | 826 |
| Psp6I | CCWGG | 1 cut(s) | 649 |
| PspGI | CCWGG | 1 cut(s) | 649 |
| PspN4I | GGNNCC | 2 cut(s) | 682, 1032 |
| PspPI | GGNCC | 1 cut(s) | 680 |
| PstI | CTGCAG | 1 cut(s) | 391 |
| PsuI | RGATCY | 4 cut(s) | 285, 391, 584, 819 |
| PsyI | GACNNNGTC | 1 cut(s) | 356 |
| RsaI | GTAC | 3 cut(s) | 229, 552, 737 |
| RsaNI | GTAC | 3 cut(s) | 228, 551, 736 |
| RseI | CAYNNNNRTG | 2 cut(s) | 702, 723 |
| SapI | GCTCTTC | 1 cut(s) | 235 |
| SaqAI | TTAA | 4 cut(s) | 210, 854, 1173, 1354 |
| SatI | GCNGC | 3 cut(s) | 16, 533, 567 |
| Sau3AI | GATC | 6 cut(s) | 285, 391, 584, 784, 819, 940 |
| Sau96I | GGNCC | 1 cut(s) | 680 |
| SchI | GAGTC | 2 cut(s) | 305, 1173 |
| ScrFI | CCNGG | 1 cut(s) | 651 |
| SduI | GDGCHC | 2 cut(s) | 115, 523 |
| SfaNI | GCATC | 4 cut(s) | 498, 982, 1248, 1297 |
| SfcI | CTRYAG | 3 cut(s) | 328, 337, 387 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 702, 723 |
| SmlI | CTYRAG | 2 cut(s) | 209, 884 |
| SmoI | CTYRAG | 2 cut(s) | 209, 884 |
| SnaBI | TACGTA | 1 cut(s) | 826 |
| Sse9I | AATT | 9 cut(s) | 92, 364, 525, 693, 713, 836, 855, 924, 1285 |
| SsiI | CCGC | 3 cut(s) | 187, 566, 1312 |
| SspMI | CTAG | 2 cut(s) | 471, 791 |
| StyD4I | CCNGG | 1 cut(s) | 649 |
| StyI | CCWWGG | 2 cut(s) | 115, 281 |
| TaaI | ACNGT | 2 cut(s) | 356, 1153 |
| TaiI | ACGT | 2 cut(s) | 374, 828 |
| TaqI | TCGA | 4 cut(s) | 85, 134, 523, 1115 |
| TaqII | GACCGA | 2 cut(s) | 118, 291 |
| TasI | AATT | 9 cut(s) | 92, 364, 525, 693, 713, 836, 855, 924, 1285 |
| TauI | GCSGC | 1 cut(s) | 569 |
| TfiI | GAWTC | 4 cut(s) | 203, 505, 985, 1117 |
| Tru1I | TTAA | 4 cut(s) | 210, 854, 1173, 1354 |
| Tru9I | TTAA | 4 cut(s) | 210, 854, 1173, 1354 |
| TscAI | CASTG | 3 cut(s) | 361, 1149, 1225 |
| TseFI | GTSAC | 1 cut(s) | 653 |
| TseI | GCWGC | 2 cut(s) | 15, 532 |
| Tsp45I | GTSAC | 1 cut(s) | 653 |
| TspDTI | ATGAA | 7 cut(s) | 197, 561, 686, 692, 720, 892, 1063 |
| TspRI | CASTG | 3 cut(s) | 361, 1149, 1225 |
| Tth111I | GACNNNGTC | 1 cut(s) | 356 |
| Vha464I | CTTAAG | 1 cut(s) | 209 |
| XapI | RAATTY | 2 cut(s) | 693, 924 |
| XspI | CTAG | 2 cut(s) | 471, 791 |