Rmu_sc0002611.1_g000008

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002611.1
OG0000142
Physical Location & Seq
Reverse (-)
31447 .. 32169
723 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002611.1_g000008.1.cds

Sequence Viewer

Length: 723 bp
atggactctctcataaaggcagaggaagacatcggcgagcttctgtttttcgatatagaaataattgatgcaaaattatatgctgcaacttggaagcaggaaccggaagtttcaatactagcgtttgaaatccaagatgttgaagatgccaataagccccttagctatagggttgagagtttgaacttgcttccgactccggagaggtggacggctgatggactccacgttggtgactggattcacttggcaaaagattcttcatcaaaggagttatttctgatttttcgttggagtagtttcgcccttgaggaggatcaaataatctcttgggagaagatcttatattgtcataatttcagcattccagctaggacagaaggatttcgagtgttcaaactagagtgcaatgttaatggttcttgcgatcggtgggtagaaattgaagaccttggtgatccaatattgtttatcagttactttagcaacatattcatcccggcaactaatagcctaaatcctcataaccccgctaactcgcttggaagaaactgtatctatttcgcttctgatcatctctgtttatcatcatcatcaagtgggcgcgatgttggggtattttctttcgaagatcggcgcgttgcgcatttcagtttctccaatgatccttctcaaaccaaattattcactgatcccgtctggttcatgccgaatccttggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295

Protein Analysis

240

Amino Acids

27.54

Weight (kDa)

4.58

Isoelectric Point (pI)

58.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000142)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13532 FvH4_2g28870 FvH4_3g30930 FvH4_3g37281 FvH4_3g37300 FvH4_3g37301 FvH4_3g37301 FvH4_4g23711 FvH4_5g02330 FvH4_6g16960 FvH4_6g16971 FvH4_6g21291 FvH4_6g21331 FvH4_6g22212 FvH4_6g22332 FvH4_6g36920 FvH4_6g37552 FvH4_6g37591 FvH4_6g39721 FvH4_6g46020 FvH4_6g47001 FvH4_6g47002 FvH4_6g47130 FvH4_6g47140 FvH4_6g47161 FvH4_6g47170 FvH4_6g47190 FvH4_6g49120 FvH4_6g49280 FvH4_6g49281 FvH4_6g49640 FvH4_6g49640
malus_domestica MD03G1085600.v1.1 MD09G1027500.v1.1 MD09G1050100.v1.1
prunus_persica Prupe.1G004300_v2.0.a1 Prupe.1G016300_v2.0.a1 Prupe.1G019300_v2.0.a1 Prupe.3G239100_v2.0.a1 Prupe.3G291200_v2.0.a1
pyrus_communis pycom08g02840 pycom08g02860 pycom08g02870
rosa_chinensis RchiOBHm_Chr2g0153831 RchiOBHm_Chr2g0166171 RchiOBHm_Chr2g0166201 RchiOBHm_Chr3g0476221 RchiOBHm_Chr4g0430971 RchiOBHm_Chr5g0067081 RchiOBHm_Chr7g0197821
rosa_laevigata RLG00000001284 RLG00000006996 RLG00000012710 RLG00000019299 RLG00000020285 RLG00000020444 RLG00000020466 RLG00000020591 RLG00000020665 RLG00000020730 RLG00000020732 RLG00000021449 RLG00000021592 RLG00000021593 RLG00000021594 RLG00000021596 RLG00000021597 RLG00000021801 RLG00000023534 RLG00000023538 RLG00000023693 RLG00000023694 RLG00000023699 RLG00000024196 RLG00000024214 RLG00000024220 RLG00000024244 RLG00000024608 RLG00000024612 RLG00000035157 RLG00000035906
rosa_multiflora Rmu_co8282815.1_g000001 Rmu_co8380495.1_g000001 Rmu_co8381111.1_g000001 Rmu_co8460513.1_g000001 Rmu_co8481947.1_g000001 Rmu_co8487937.1_g000001 Rmu_sc0000151.1_g000017 Rmu_sc0001427.1_g000003 Rmu_sc0001427.1_g000006 Rmu_sc0002611.1_g000008 Rmu_sc0003887.1_g000018 Rmu_sc0003887.1_g000019 Rmu_sc0003887.1_g000021 Rmu_sc0004119.1_g000004 Rmu_sc0004329.1_g000003 Rmu_sc0004485.1_g000024 Rmu_sc0005290.1_g000001 Rmu_sc0005609.1_g000006 Rmu_sc0006187.1_g000018 Rmu_sc0006218.1_g000032 Rmu_sc0006218.1_g000033 Rmu_sc0007150.1_g000003 Rmu_sc0007154.1_g000004 Rmu_sc0007154.1_g000005 Rmu_sc0007154.1_g000007 Rmu_sc0008314.1_g000012 Rmu_sc0010073.1_g000023 Rmu_sc0010073.1_g000025 Rmu_sc0011216.1_g000008 Rmu_sc0012445.1_g000005 Rmu_sc0013571.1_g000002 Rmu_sc0018648.1_g000002 Rmu_sc0020961.1_g000002 Rmu_sc0020961.1_g000003 Rmu_sc0023710.1_g000001 Rmu_sc0031310.1_g000008 Rmu_sc0033940.1_g000001 Rmu_sc0035493.1_g000001 Rmu_sc0039285.1_g000001
rosa_roxburghii Rroxscaffold_1G00014000 Rroxscaffold_1G00014020 Rroxscaffold_2G00082760 Rroxscaffold_2G00085090 Rroxscaffold_2G00085100 Rroxscaffold_2G00085140 Rroxscaffold_2G00086670 Rroxscaffold_2G00086680 Rroxscaffold_2G00098190 Rroxscaffold_2G00099270 Rroxscaffold_3G00227460 Rroxscaffold_3G00258190 Rroxscaffold_3G00259780 Rroxscaffold_6G00402940 Rroxscaffold_6G00410200 Rroxscaffold_6G00410210 Rroxscaffold_7G00184320
rosa_rugosa Rorug02G0416100 Rorug02G0416200 Rorug02G0520900 Rorug02G0521200 Rorug02G0521300 Rorug02G0534600 Rorug03G0116300 Rorug03G0162900 Rorug03G0162900 Rorug04G0241400 Rorug05G0380900 Rorug07G0043800
rosa_samantha Rh1AG115300 Rh2BG483700 Rh2BG509900 Rh2BG515700 Rh2BG515800 Rh2BG586500 Rh2BG586600 Rh2BG586700 Rh2BG598800 Rh2BG598900 Rh2BG599100 Rh2BG618400 Rh2BG630500 Rh2CG457400 Rh2CG484900 Rh3AG165300 Rh3AG212900 Rh3AG213300 Rh3BG145800 Rh3BG146100 Rh3BG235300 Rh3BG246500 Rh3BG247000 Rh3BG247100 Rh3CG240300 Rh3CG240800 Rh3CG240900 Rh3CG259600 Rh3DG147000 Rh3DG184800 Rh3DG184900 Rh3DG185000 Rh3DG239500 Rh3DG240100 Rh3DG240200 Rh3DG255800 Rh5BG458500 Rh5CG480400 Rh7BG170400 Rh7BG407900 Rh7CG176900
rosa_wichuraiana Rw2G038990 Rw2G041550 Rw2G047660 Rw2G048940 Rw4G026370 Rw6G008730 Rw7G014600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 645
AccII CGCG 2 cut(s) 606, 639
AccIII TCCGGA 1 cut(s) 199
AciI CCGC 1 cut(s) 531
AclWI GGATC 4 cut(s) 324, 452, 659, 686
AfiI CCNNNNNNNGG 1 cut(s) 313
AgsI TTSAA 6 cut(s) 114, 128, 143, 184, 397, 446
AleI CACNNNNGTG 1 cut(s) 231
AluBI AGCT 3 cut(s) 40, 165, 371
AluI AGCT 3 cut(s) 40, 165, 371
AlwI GGATC 4 cut(s) 324, 452, 659, 686
Aor13HI TCCGGA 1 cut(s) 199
ApeKI GCWGC 1 cut(s) 83
Asp700I GAANNNNTTC 1 cut(s) 384
AspLEI GCGC 3 cut(s) 606, 639, 646
AsuC2I CCSGG 1 cut(s) 500
AsuHPI GGTGA 2 cut(s) 245, 467
AsuII TTCGAA 1 cut(s) 627
BarI GAAGNNNNNNTAC 2 cut(s) 99, 131
BbsI GAAGAC 2 cut(s) 33, 453
BbvI GCAGC 1 cut(s) 70
BccI CCATC 1 cut(s) 212
BceAI ACGGC 1 cut(s) 228
BclI TGATCA 1 cut(s) 571
BcnI CCSGG 1 cut(s) 500
BfaI CTAG 3 cut(s) 119, 372, 401
BfmI CTRYAG 1 cut(s) 166
BglII AGATCT 1 cut(s) 339
BisI GCNGC 1 cut(s) 84
BlsI GCNGC 1 cut(s) 85
Bme1390I CCNGG 1 cut(s) 500
BmiI GGNNCC 1 cut(s) 102
BmrFI CCNGG 1 cut(s) 500
BmsI GCATC 2 cut(s) 58, 136
BpiI GAAGAC 2 cut(s) 33, 453
Bpu10I CCTNAGC 1 cut(s) 161
Bpu14I TTCGAA 1 cut(s) 627
BpuEI CTTGAG 1 cut(s) 329
BpuMI CCSGG 1 cut(s) 500
BsaJI CCNNGG 2 cut(s) 451, 716
BsaWI WCCGGW 2 cut(s) 103, 199
Bsc4I CCNNNNNNNGG 1 cut(s) 313
Bse1I ACTGG 1 cut(s) 242
Bse3DI GCAATG 1 cut(s) 415
BseAI TCCGGA 1 cut(s) 199
BseDI CCNNGG 2 cut(s) 451, 716
BseGI GGATG 1 cut(s) 495
BseLI CCNNNNNNNGG 1 cut(s) 313
BseMI GCAATG 1 cut(s) 415
BseNI ACTGG 1 cut(s) 242
BseRI GAGGAG 1 cut(s) 326
BseXI GCAGC 1 cut(s) 70
Bsh1236I CGCG 2 cut(s) 606, 639
Bsh1285I CGRYCG 1 cut(s) 430
BsiEI CGRYCG 1 cut(s) 430
BsiSI CCGG 3 cut(s) 104, 200, 500
BslI CCNNNNNNNGG 1 cut(s) 313
BsmI GAATGC 1 cut(s) 363
Bsp119I TTCGAA 1 cut(s) 627
Bsp13I TCCGGA 1 cut(s) 199
Bsp143I GATC 8 cut(s) 316, 339, 427, 457, 571, 631, 664, 691
BspACI CCGC 1 cut(s) 531
BspEI TCCGGA 1 cut(s) 199
BspFNI CGCG 2 cut(s) 606, 639
BspLI GGNNCC 1 cut(s) 102
BspPI GGATC 4 cut(s) 324, 452, 659, 686
BspT104I TTCGAA 1 cut(s) 627
BsrDI GCAATG 1 cut(s) 415
BsrI ACTGG 1 cut(s) 242
BssECI CCNNGG 2 cut(s) 451, 716
BssMI GATC 8 cut(s) 316, 339, 427, 457, 571, 631, 664, 691
BssT1I CCWWGG 2 cut(s) 451, 716
Bst4CI ACNGT 1 cut(s) 554
BstBI TTCGAA 1 cut(s) 627
BstC8I GCNNGC 1 cut(s) 38
BstDEI CTNAG 1 cut(s) 161
BstENI CCTNNNNNAGG 1 cut(s) 311
BstF5I GGATG 1 cut(s) 495
BstFNI CGCG 2 cut(s) 606, 639
BstHHI GCGC 3 cut(s) 606, 639, 646
BstKTI GATC 8 cut(s) 319, 342, 430, 460, 574, 634, 667, 694
BstMBI GATC 8 cut(s) 316, 339, 427, 457, 571, 631, 664, 691
BstMCI CGRYCG 1 cut(s) 430
BstMWI GCNNNNNNNGC 1 cut(s) 643
BstSCI CCNGG 1 cut(s) 498
BstSFI CTRYAG 1 cut(s) 166
BstUI CGCG 2 cut(s) 606, 639
BstV1I GCAGC 1 cut(s) 70
BstV2I GAAGAC 2 cut(s) 33, 453
BstX2I RGATCY 1 cut(s) 339
BstYI RGATCY 1 cut(s) 339
BtgZI GCGATG 1 cut(s) 621
BtsCI GGATG 1 cut(s) 495
BtsIMutI CAGTG 1 cut(s) 687
Cac8I GCNNGC 1 cut(s) 38
CfoI GCGC 3 cut(s) 606, 639, 646
CviAII CATG 1 cut(s) 706
CviJI RGCY 6 cut(s) 40, 157, 165, 215, 371, 513
CviKI_1 RGCY 6 cut(s) 40, 157, 165, 215, 371, 513
DdeI CTNAG 1 cut(s) 161
DpnI GATC 8 cut(s) 318, 341, 429, 459, 573, 633, 666, 693
DpnII GATC 8 cut(s) 316, 339, 427, 457, 571, 631, 664, 691
Eco130I CCWWGG 2 cut(s) 451, 716
EcoNI CCTNNNNNAGG 1 cut(s) 311
EcoT14I CCWWGG 2 cut(s) 451, 716
ErhI CCWWGG 2 cut(s) 451, 716
FaeI CATG 1 cut(s) 709
FatI CATG 1 cut(s) 705
FauI CCCGC 1 cut(s) 538
FbaI TGATCA 1 cut(s) 571
Fnu4HI GCNGC 1 cut(s) 84
FokI GGATG 1 cut(s) 482
Fsp4HI GCNGC 1 cut(s) 84
FspBI CTAG 3 cut(s) 119, 372, 401
FspI TGCGCA 1 cut(s) 645
GlaI GCGC 3 cut(s) 605, 638, 645
GluI GCNGC 1 cut(s) 84
HapII CCGG 3 cut(s) 104, 200, 500
HhaI GCGC 3 cut(s) 606, 639, 646
Hin1II CATG 1 cut(s) 709
Hin6I GCGC 3 cut(s) 604, 637, 644
HinP1I GCGC 3 cut(s) 604, 637, 644
HinfI GANTC 6 cut(s) 5, 196, 222, 241, 257, 712
HpaII CCGG 3 cut(s) 104, 200, 500
HphI GGTGA 2 cut(s) 245, 467
Hpy166II GTNNAC 1 cut(s) 210
Hpy188I TCNGA 3 cut(s) 195, 282, 571
Hpy188III TCNNGA 1 cut(s) 200
Hpy8I GTNNAC 1 cut(s) 210
HpyAV CCTTC 2 cut(s) 374, 678
HpyCH4III ACNGT 1 cut(s) 554
HpyCH4IV ACGT 1 cut(s) 228
HpyCH4V TGCA 3 cut(s) 71, 86, 408
HpyF10VI GCNNNNNNNGC 1 cut(s) 643
HpyF3I CTNAG 1 cut(s) 161
HpySE526I ACGT 1 cut(s) 228
Hsp92II CATG 1 cut(s) 709
HspAI GCGC 3 cut(s) 604, 637, 644
Kpn2I TCCGGA 1 cut(s) 199
Ksp22I TGATCA 1 cut(s) 571
Kzo9I GATC 8 cut(s) 316, 339, 427, 457, 571, 631, 664, 691
LpnPI CCDG 7 cut(s) 83, 117, 213, 223, 381, 513, 685
Lsp1109I GCAGC 1 cut(s) 70
LweI GCATC 2 cut(s) 58, 136
MaeI CTAG 3 cut(s) 119, 372, 401
MaeII ACGT 1 cut(s) 228
MaeIII GTNAC 2 cut(s) 233, 476
MalI GATC 8 cut(s) 318, 341, 429, 459, 573, 633, 666, 693
MboI GATC 8 cut(s) 316, 339, 427, 457, 571, 631, 664, 691
MboII GAAGA 7 cut(s) 38, 155, 252, 349, 458, 558, 641
MflI RGATCY 1 cut(s) 339
MluCI AATT 5 cut(s) 63, 74, 355, 441, 680
MlyI GAGTC 2 cut(s) 190, 216
MmeI TCCRAC 2 cut(s) 218, 272
MnlI CCTC 5 cut(s) 16, 198, 304, 307, 531
MroI TCCGGA 1 cut(s) 199
MroXI GAANNNNTTC 1 cut(s) 384
MseI TTAA 1 cut(s) 414
MslI CAYNNNNRTG 1 cut(s) 231
MspI CCGG 3 cut(s) 104, 200, 500
MspR9I CCNGG 1 cut(s) 500
Mva1269I GAATGC 1 cut(s) 363
MvnI CGCG 2 cut(s) 606, 639
MwoI GCNNNNNNNGC 1 cut(s) 643
NciI CCSGG 1 cut(s) 500
NdeII GATC 8 cut(s) 316, 339, 427, 457, 571, 631, 664, 691
NlaIII CATG 1 cut(s) 709
NlaIV GGNNCC 1 cut(s) 102
NmuCI GTSAC 1 cut(s) 233
NsbI TGCGCA 1 cut(s) 645
NspV TTCGAA 1 cut(s) 627
OliI CACNNNNGTG 1 cut(s) 231
PctI GAATGC 1 cut(s) 363
PdmI GAANNNNTTC 1 cut(s) 384
PfeI GAWTC 3 cut(s) 241, 257, 712
PkrI GCNGC 1 cut(s) 85
Ple19I CGATCG 1 cut(s) 430
PleI GAGTC 2 cut(s) 190, 216
PpsI GAGTC 2 cut(s) 190, 216
PspN4I GGNNCC 1 cut(s) 102
PsuI RGATCY 1 cut(s) 339
PvuI CGATCG 1 cut(s) 430
RseI CAYNNNNRTG 1 cut(s) 231
SaqAI TTAA 1 cut(s) 414
SatI GCNGC 1 cut(s) 84
Sau3AI GATC 8 cut(s) 316, 339, 427, 457, 571, 631, 664, 691
SchI GAGTC 2 cut(s) 190, 216
ScrFI CCNGG 1 cut(s) 500
SetI ASST 6 cut(s) 42, 167, 209, 231, 373, 453
SfaNI GCATC 2 cut(s) 58, 136
SfcI CTRYAG 1 cut(s) 166
SfuI TTCGAA 1 cut(s) 627
SmiMI CAYNNNNRTG 1 cut(s) 231
SmlI CTYRAG 1 cut(s) 308
SmoI CTYRAG 1 cut(s) 308
Sse9I AATT 5 cut(s) 63, 74, 355, 441, 680
SsiI CCGC 1 cut(s) 531
SspI AATATT 1 cut(s) 465
SspMI CTAG 3 cut(s) 119, 372, 401
StyD4I CCNGG 1 cut(s) 498
StyI CCWWGG 2 cut(s) 451, 716
TaaI ACNGT 1 cut(s) 554
TaiI ACGT 1 cut(s) 231
TaqI TCGA 3 cut(s) 51, 388, 627
TasI AATT 5 cut(s) 63, 74, 355, 441, 680
TfiI GAWTC 3 cut(s) 241, 257, 712
Tru1I TTAA 1 cut(s) 414
Tru9I TTAA 1 cut(s) 414
TscAI CASTG 1 cut(s) 694
TseFI GTSAC 1 cut(s) 233
TseI GCWGC 1 cut(s) 83
Tsp45I GTSAC 1 cut(s) 233
TspDTI ATGAA 3 cut(s) 252, 484, 694
TspRI CASTG 1 cut(s) 694
XagI CCTNNNNNAGG 1 cut(s) 311
XmnI GAANNNNTTC 1 cut(s) 384
XspI CTAG 3 cut(s) 119, 372, 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.