Rroxscaffold_7G00184320

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000142
Physical Location & Seq
Reverse (-)
23533616 .. 23534032
417 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00184320.1

Sequence Viewer

Length: 417 bp
ATGGTGGCACCTCCATTAAGACAAATCAATCGTATTGGTGAACTAAAGATTACATGTCACAACATTCACCTGGCAAAAGATCCTACATCAAAGAACTTGTTTATGATTCTTCGTGAGAACAGTTTTGTAGTCAACAATGATCCGCCAATTCCCTGGTCTGTGATTATAGGTGATACAGATTTCATCATTCCACCCAAGACTCGAGGGTTTCGAGTGTTTAAACTGGTGCAAAATGCTCGTGGACGTCCTGAATGGTTAGAGATATTTGACCTCGGTGATCGAATACTGTTTGTGAGTGGGGCCGCCAACATATTCATGGATGCCAATGGCAGCAATGGCCTATACTATGATCATCTCCGCCGAGGCAAGATACTTGAAAGAAACTGCATTTATTTTGCTTTTGATAGTTCTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295

Protein Analysis

138

Amino Acids

15.79

Weight (kDa)

9.06

Isoelectric Point (pI)

40.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 32 - 135 4e-08 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000142)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13532 FvH4_2g28870 FvH4_3g30930 FvH4_3g37281 FvH4_3g37300 FvH4_3g37301 FvH4_3g37301 FvH4_4g23711 FvH4_5g02330 FvH4_6g16960 FvH4_6g16971 FvH4_6g21291 FvH4_6g21331 FvH4_6g22212 FvH4_6g22332 FvH4_6g36920 FvH4_6g37552 FvH4_6g37591 FvH4_6g39721 FvH4_6g46020 FvH4_6g47001 FvH4_6g47002 FvH4_6g47130 FvH4_6g47140 FvH4_6g47161 FvH4_6g47170 FvH4_6g47190 FvH4_6g49120 FvH4_6g49280 FvH4_6g49281 FvH4_6g49640 FvH4_6g49640
malus_domestica MD03G1085600.v1.1 MD09G1027500.v1.1 MD09G1050100.v1.1
prunus_persica Prupe.1G004300_v2.0.a1 Prupe.1G016300_v2.0.a1 Prupe.1G019300_v2.0.a1 Prupe.3G239100_v2.0.a1 Prupe.3G291200_v2.0.a1
pyrus_communis pycom08g02840 pycom08g02860 pycom08g02870
rosa_chinensis RchiOBHm_Chr2g0153831 RchiOBHm_Chr2g0166171 RchiOBHm_Chr2g0166201 RchiOBHm_Chr3g0476221 RchiOBHm_Chr4g0430971 RchiOBHm_Chr5g0067081 RchiOBHm_Chr7g0197821
rosa_laevigata RLG00000001284 RLG00000006996 RLG00000012710 RLG00000019299 RLG00000020285 RLG00000020444 RLG00000020466 RLG00000020591 RLG00000020665 RLG00000020730 RLG00000020732 RLG00000021449 RLG00000021592 RLG00000021593 RLG00000021594 RLG00000021596 RLG00000021597 RLG00000021801 RLG00000023534 RLG00000023538 RLG00000023693 RLG00000023694 RLG00000023699 RLG00000024196 RLG00000024214 RLG00000024220 RLG00000024244 RLG00000024608 RLG00000024612 RLG00000035157 RLG00000035906
rosa_multiflora Rmu_co8282815.1_g000001 Rmu_co8380495.1_g000001 Rmu_co8381111.1_g000001 Rmu_co8460513.1_g000001 Rmu_co8481947.1_g000001 Rmu_co8487937.1_g000001 Rmu_sc0000151.1_g000017 Rmu_sc0001427.1_g000003 Rmu_sc0001427.1_g000006 Rmu_sc0002611.1_g000008 Rmu_sc0003887.1_g000018 Rmu_sc0003887.1_g000019 Rmu_sc0003887.1_g000021 Rmu_sc0004119.1_g000004 Rmu_sc0004329.1_g000003 Rmu_sc0004485.1_g000024 Rmu_sc0005290.1_g000001 Rmu_sc0005609.1_g000006 Rmu_sc0006187.1_g000018 Rmu_sc0006218.1_g000032 Rmu_sc0006218.1_g000033 Rmu_sc0007150.1_g000003 Rmu_sc0007154.1_g000004 Rmu_sc0007154.1_g000005 Rmu_sc0007154.1_g000007 Rmu_sc0008314.1_g000012 Rmu_sc0010073.1_g000023 Rmu_sc0010073.1_g000025 Rmu_sc0011216.1_g000008 Rmu_sc0012445.1_g000005 Rmu_sc0013571.1_g000002 Rmu_sc0018648.1_g000002 Rmu_sc0020961.1_g000002 Rmu_sc0020961.1_g000003 Rmu_sc0023710.1_g000001 Rmu_sc0031310.1_g000008 Rmu_sc0033940.1_g000001 Rmu_sc0035493.1_g000001 Rmu_sc0039285.1_g000001
rosa_roxburghii Rroxscaffold_1G00014000 Rroxscaffold_1G00014020 Rroxscaffold_2G00082760 Rroxscaffold_2G00085090 Rroxscaffold_2G00085100 Rroxscaffold_2G00085140 Rroxscaffold_2G00086670 Rroxscaffold_2G00086680 Rroxscaffold_2G00098190 Rroxscaffold_2G00099270 Rroxscaffold_3G00227460 Rroxscaffold_3G00258190 Rroxscaffold_3G00259780 Rroxscaffold_6G00402940 Rroxscaffold_6G00410200 Rroxscaffold_6G00410210 Rroxscaffold_7G00184320
rosa_rugosa Rorug02G0416100 Rorug02G0416200 Rorug02G0520900 Rorug02G0521200 Rorug02G0521300 Rorug02G0534600 Rorug03G0116300 Rorug03G0162900 Rorug03G0162900 Rorug04G0241400 Rorug05G0380900 Rorug07G0043800
rosa_samantha Rh1AG115300 Rh2BG483700 Rh2BG509900 Rh2BG515700 Rh2BG515800 Rh2BG586500 Rh2BG586600 Rh2BG586700 Rh2BG598800 Rh2BG598900 Rh2BG599100 Rh2BG618400 Rh2BG630500 Rh2CG457400 Rh2CG484900 Rh3AG165300 Rh3AG212900 Rh3AG213300 Rh3BG145800 Rh3BG146100 Rh3BG235300 Rh3BG246500 Rh3BG247000 Rh3BG247100 Rh3CG240300 Rh3CG240800 Rh3CG240900 Rh3CG259600 Rh3DG147000 Rh3DG184800 Rh3DG184900 Rh3DG185000 Rh3DG239500 Rh3DG240100 Rh3DG240200 Rh3DG255800 Rh5BG458500 Rh5CG480400 Rh7BG170400 Rh7BG407900 Rh7CG176900
rosa_wichuraiana Rw2G038990 Rw2G041550 Rw2G047660 Rw2G048940 Rw4G026370 Rw6G008730 Rw7G014600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 247
AccB1I GGYRCC 1 cut(s) 7
AciI CCGC 3 cut(s) 143, 303, 358
AclWI GGATC 2 cut(s) 74, 134
AcyI GRCGYC 1 cut(s) 244
AflIII ACRYGT 1 cut(s) 53
AgsI TTSAA 1 cut(s) 377
AjnI CCWGG 2 cut(s) 69, 152
AlwI GGATC 2 cut(s) 74, 134
Ama87I CYCGRG 1 cut(s) 201
AoxI GGCC 2 cut(s) 300, 337
ApeKI GCWGC 1 cut(s) 330
AspS9I GGNCC 1 cut(s) 300
AsuHPI GGTGA 4 cut(s) 50, 59, 182, 287
AvaI CYCGRG 1 cut(s) 201
BanI GGYRCC 1 cut(s) 7
BauI CACGAG 1 cut(s) 237
BbvI GCAGC 1 cut(s) 342
BcgI CGANNNNNNTGC 2 cut(s) 218, 252
BciT130I CCWGG 2 cut(s) 71, 154
BclI TGATCA 1 cut(s) 349
BisI GCNGC 2 cut(s) 303, 331
BlsI GCNGC 2 cut(s) 304, 332
Bme1390I CCNGG 2 cut(s) 71, 154
BmeT110I CYCGRG 1 cut(s) 201
BmgT120I GGNCC 1 cut(s) 300
BmiI GGNNCC 2 cut(s) 9, 301
BmrFI CCNGG 2 cut(s) 71, 154
BmsI GCATC 1 cut(s) 310
BsaHI GRCGYC 1 cut(s) 244
BsaJI CCNNGG 3 cut(s) 152, 271, 361
Bse1I ACTGG 1 cut(s) 228
Bse3DI GCAATG 1 cut(s) 340
BseBI CCWGG 2 cut(s) 71, 154
BseDI CCNNGG 3 cut(s) 152, 271, 361
BseGI GGATG 1 cut(s) 325
BseMI GCAATG 1 cut(s) 340
BseNI ACTGG 1 cut(s) 228
BseXI GCAGC 1 cut(s) 342
BshFI GGCC 2 cut(s) 302, 339
BshNI GGYRCC 1 cut(s) 7
BsiHKCI CYCGRG 1 cut(s) 201
BsnI GGCC 2 cut(s) 302, 339
BsoBI CYCGRG 1 cut(s) 201
Bsp143I GATC 4 cut(s) 79, 139, 277, 349
BspACI CCGC 3 cut(s) 143, 303, 358
BspANI GGCC 2 cut(s) 302, 339
BspLI GGNNCC 2 cut(s) 9, 301
BspPI GGATC 2 cut(s) 74, 134
BspT107I GGYRCC 1 cut(s) 7
BsrDI GCAATG 1 cut(s) 340
BsrI ACTGG 1 cut(s) 228
BssECI CCNNGG 3 cut(s) 152, 271, 361
BssMI GATC 4 cut(s) 79, 139, 277, 349
BssNI GRCGYC 1 cut(s) 244
BssSI CACGAG 1 cut(s) 237
Bst2BI CACGAG 1 cut(s) 237
Bst2UI CCWGG 2 cut(s) 71, 154
Bst4CI ACNGT 2 cut(s) 122, 288
BstACI GRCGYC 1 cut(s) 244
BstF5I GGATG 1 cut(s) 325
BstKTI GATC 4 cut(s) 82, 142, 280, 352
BstMBI GATC 4 cut(s) 79, 139, 277, 349
BstMWI GCNNNNNNNGC 1 cut(s) 336
BstNI CCWGG 2 cut(s) 71, 154
BstNSI RCATGY 1 cut(s) 57
BstSCI CCNGG 2 cut(s) 69, 152
BstV1I GCAGC 1 cut(s) 342
BstX2I RGATCY 1 cut(s) 79
BstXI CCANNNNNNTGG 1 cut(s) 153
BstYI RGATCY 1 cut(s) 79
BsuRI GGCC 2 cut(s) 302, 339
BtsCI GGATG 1 cut(s) 325
Cfr13I GGNCC 1 cut(s) 300
CviAII CATG 2 cut(s) 54, 316
CviJI RGCY 2 cut(s) 302, 339
CviKI_1 RGCY 2 cut(s) 302, 339
DpnI GATC 4 cut(s) 81, 141, 279, 351
DpnII GATC 4 cut(s) 79, 139, 277, 349
DraI TTTAAA 1 cut(s) 220
EciI GGCGGA 2 cut(s) 132, 347
Eco88I CYCGRG 1 cut(s) 201
EcoRII CCWGG 2 cut(s) 69, 152
FaeI CATG 2 cut(s) 57, 319
FaiI YATR 7 cut(s) 55, 104, 167, 311, 317, 343, 348
FatI CATG 2 cut(s) 53, 315
FbaI TGATCA 1 cut(s) 349
Fnu4HI GCNGC 2 cut(s) 303, 331
FokI GGATG 1 cut(s) 332
Fsp4HI GCNGC 2 cut(s) 303, 331
GluI GCNGC 2 cut(s) 303, 331
HaeIII GGCC 2 cut(s) 302, 339
Hin1I GRCGYC 1 cut(s) 244
Hin1II CATG 2 cut(s) 57, 319
HincII GTYRAC 1 cut(s) 133
HindII GTYRAC 1 cut(s) 133
HinfI GANTC 2 cut(s) 106, 199
HphI GGTGA 4 cut(s) 50, 59, 182, 287
Hpy166II GTNNAC 3 cut(s) 41, 133, 242
Hpy188III TCNNGA 2 cut(s) 113, 248
Hpy8I GTNNAC 3 cut(s) 41, 133, 242
HpyCH4III ACNGT 2 cut(s) 122, 288
HpyCH4IV ACGT 1 cut(s) 244
HpyCH4V TGCA 2 cut(s) 229, 387
HpyF10VI GCNNNNNNNGC 1 cut(s) 336
HpySE526I ACGT 1 cut(s) 244
Hsp92I GRCGYC 1 cut(s) 244
Hsp92II CATG 2 cut(s) 57, 319
Ksp22I TGATCA 1 cut(s) 349
Kzo9I GATC 4 cut(s) 79, 139, 277, 349
LpnPI CCDG 6 cut(s) 56, 83, 139, 166, 209, 261
Lsp1109I GCAGC 1 cut(s) 342
LweI GCATC 1 cut(s) 310
MaeII ACGT 1 cut(s) 244
MaeIII GTNAC 1 cut(s) 56
MalI GATC 4 cut(s) 81, 141, 279, 351
MboI GATC 4 cut(s) 79, 139, 277, 349
MboII GAAGA 1 cut(s) 101
MflI RGATCY 1 cut(s) 79
MluCI AATT 1 cut(s) 147
MlyI GAGTC 1 cut(s) 193
MnlI CCTC 4 cut(s) 21, 197, 281, 356
MseI TTAA 3 cut(s) 17, 219, 415
MslI CAYNNNNRTG 1 cut(s) 314
MspR9I CCNGG 2 cut(s) 71, 154
MssI GTTTAAAC 1 cut(s) 220
MvaI CCWGG 2 cut(s) 71, 154
MwoI GCNNNNNNNGC 1 cut(s) 336
NdeII GATC 4 cut(s) 79, 139, 277, 349
NlaIII CATG 2 cut(s) 57, 319
NlaIV GGNNCC 2 cut(s) 9, 301
NmeAIII GCCGAG 1 cut(s) 386
NmuCI GTSAC 1 cut(s) 56
NspI RCATGY 1 cut(s) 57
PaeR7I CTCGAG 1 cut(s) 201
PciI ACATGT 1 cut(s) 53
PcsI WCGNNNNNNNCGW 1 cut(s) 208
PfeI GAWTC 1 cut(s) 106
PkrI GCNGC 2 cut(s) 304, 332
PleI GAGTC 1 cut(s) 193
PmeI GTTTAAAC 1 cut(s) 220
PpsI GAGTC 1 cut(s) 193
PscI ACATGT 1 cut(s) 53
Psp6I CCWGG 2 cut(s) 69, 152
PspGI CCWGG 2 cut(s) 69, 152
PspN4I GGNNCC 2 cut(s) 9, 301
PspPI GGNCC 1 cut(s) 300
PspXI VCTCGAGB 1 cut(s) 201
PsuI RGATCY 1 cut(s) 79
RseI CAYNNNNRTG 1 cut(s) 314
SaqAI TTAA 3 cut(s) 17, 219, 415
SatI GCNGC 2 cut(s) 303, 331
Sau3AI GATC 4 cut(s) 79, 139, 277, 349
Sau96I GGNCC 1 cut(s) 300
SchI GAGTC 1 cut(s) 193
ScrFI CCNGG 2 cut(s) 71, 154
SetI ASST 5 cut(s) 13, 72, 172, 247, 273
SfaNI GCATC 1 cut(s) 310
Sfr274I CTCGAG 1 cut(s) 201
SlaI CTCGAG 1 cut(s) 201
SmiMI CAYNNNNRTG 1 cut(s) 314
SmlI CTYRAG 1 cut(s) 201
SmoI CTYRAG 1 cut(s) 201
Sse9I AATT 1 cut(s) 147
SsiI CCGC 3 cut(s) 143, 303, 358
StyD4I CCNGG 2 cut(s) 69, 152
TaaI ACNGT 2 cut(s) 122, 288
TaiI ACGT 1 cut(s) 247
TaqI TCGA 3 cut(s) 202, 211, 280
TasI AATT 1 cut(s) 147
TauI GCSGC 1 cut(s) 305
TfiI GAWTC 1 cut(s) 106
Tru1I TTAA 3 cut(s) 17, 219, 415
Tru9I TTAA 3 cut(s) 17, 219, 415
TseFI GTSAC 1 cut(s) 56
TseI GCWGC 1 cut(s) 330
Tsp45I GTSAC 1 cut(s) 56
TspDTI ATGAA 2 cut(s) 172, 304
XceI RCATGY 1 cut(s) 57
XcmI CCANNNNNNNNNTGG 1 cut(s) 313
XhoI CTCGAG 1 cut(s) 201
ZraI GACGTC 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.