Rh7BG407900

Glycine-rich domain-containing protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000142
Physical Location & Seq
Reverse (-)
45740286 .. 45741108
823 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG407900.1

Sequence Viewer

Length: 621 bp
ATGTCAATGTCAATGACGAAGAAGGAGGAGGAACAAGAGGAGAGGTGGTCGAATGGACTTCCAGAACATATCTTGCAGTTGATACCACAAAGGCTATGCATATCAGATTACCAAGTGTTTCGCCAAGAATGCCCTAATTGGCGAGCCGCAGTTGATATAGGCATCGCCACCAAGACTTGCCCTCCCGCTCCGGAACTCCCCTGGAAGAAAACTCGAATCAAGGAAGAGTGGCTGTTATTGCCTTGGATCACATCAGCTTTCATACTTTCGGATGTTATGTCCGATGACGGCTATGATGGTTTCAGAAACTACCAGTGGAGAGAAGCAATCAGAATTTATTACTCAACAGACGTTGTTAACATTAAGCGCAATGAGAAAGAAAAAAGAGCCAATTTGTTCACTGCCTCGGAAAAAATGAAACTTGAGGGGGATAATGAGAGTTTAAACATATGGGAGGCCCTGAAAAAAGGTGGCTCATGTGACCCTTATGAAGCTGGCTTTAGCCCCTACAATATGACAAAAGGTAGCCATTGCGGAATAAGATGTGGCAGCTGTGGCGGTGGTTGTGACAGTTGTGGCCAGTGCCGGGGTGGTCAGTGTGGGGGAGGCAAATGCAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GRDP-like

Protein Analysis

206

Amino Acids

23.29

Weight (kDa)

6.19

Isoelectric Point (pI)

64.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000142)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13532 FvH4_2g28870 FvH4_3g30930 FvH4_3g37281 FvH4_3g37300 FvH4_3g37301 FvH4_3g37301 FvH4_4g23711 FvH4_5g02330 FvH4_6g16960 FvH4_6g16971 FvH4_6g21291 FvH4_6g21331 FvH4_6g22212 FvH4_6g22332 FvH4_6g36920 FvH4_6g37552 FvH4_6g37591 FvH4_6g39721 FvH4_6g46020 FvH4_6g47001 FvH4_6g47002 FvH4_6g47130 FvH4_6g47140 FvH4_6g47161 FvH4_6g47170 FvH4_6g47190 FvH4_6g49120 FvH4_6g49280 FvH4_6g49281 FvH4_6g49640 FvH4_6g49640
malus_domestica MD03G1085600.v1.1 MD09G1027500.v1.1 MD09G1050100.v1.1
prunus_persica Prupe.1G004300_v2.0.a1 Prupe.1G016300_v2.0.a1 Prupe.1G019300_v2.0.a1 Prupe.3G239100_v2.0.a1 Prupe.3G291200_v2.0.a1
pyrus_communis pycom08g02840 pycom08g02860 pycom08g02870
rosa_chinensis RchiOBHm_Chr2g0153831 RchiOBHm_Chr2g0166171 RchiOBHm_Chr2g0166201 RchiOBHm_Chr3g0476221 RchiOBHm_Chr4g0430971 RchiOBHm_Chr5g0067081 RchiOBHm_Chr7g0197821
rosa_laevigata RLG00000001284 RLG00000006996 RLG00000012710 RLG00000019299 RLG00000020285 RLG00000020444 RLG00000020466 RLG00000020591 RLG00000020665 RLG00000020730 RLG00000020732 RLG00000021449 RLG00000021592 RLG00000021593 RLG00000021594 RLG00000021596 RLG00000021597 RLG00000021801 RLG00000023534 RLG00000023538 RLG00000023693 RLG00000023694 RLG00000023699 RLG00000024196 RLG00000024214 RLG00000024220 RLG00000024244 RLG00000024608 RLG00000024612 RLG00000035157 RLG00000035906
rosa_multiflora Rmu_co8282815.1_g000001 Rmu_co8380495.1_g000001 Rmu_co8381111.1_g000001 Rmu_co8460513.1_g000001 Rmu_co8481947.1_g000001 Rmu_co8487937.1_g000001 Rmu_sc0000151.1_g000017 Rmu_sc0001427.1_g000003 Rmu_sc0001427.1_g000006 Rmu_sc0002611.1_g000008 Rmu_sc0003887.1_g000018 Rmu_sc0003887.1_g000019 Rmu_sc0003887.1_g000021 Rmu_sc0004119.1_g000004 Rmu_sc0004329.1_g000003 Rmu_sc0004485.1_g000024 Rmu_sc0005290.1_g000001 Rmu_sc0005609.1_g000006 Rmu_sc0006187.1_g000018 Rmu_sc0006218.1_g000032 Rmu_sc0006218.1_g000033 Rmu_sc0007150.1_g000003 Rmu_sc0007154.1_g000004 Rmu_sc0007154.1_g000005 Rmu_sc0007154.1_g000007 Rmu_sc0008314.1_g000012 Rmu_sc0010073.1_g000023 Rmu_sc0010073.1_g000025 Rmu_sc0011216.1_g000008 Rmu_sc0012445.1_g000005 Rmu_sc0013571.1_g000002 Rmu_sc0018648.1_g000002 Rmu_sc0020961.1_g000002 Rmu_sc0020961.1_g000003 Rmu_sc0023710.1_g000001 Rmu_sc0031310.1_g000008 Rmu_sc0033940.1_g000001 Rmu_sc0035493.1_g000001 Rmu_sc0039285.1_g000001
rosa_roxburghii Rroxscaffold_1G00014000 Rroxscaffold_1G00014020 Rroxscaffold_2G00082760 Rroxscaffold_2G00085090 Rroxscaffold_2G00085100 Rroxscaffold_2G00085140 Rroxscaffold_2G00086670 Rroxscaffold_2G00086680 Rroxscaffold_2G00098190 Rroxscaffold_2G00099270 Rroxscaffold_3G00227460 Rroxscaffold_3G00258190 Rroxscaffold_3G00259780 Rroxscaffold_6G00402940 Rroxscaffold_6G00410200 Rroxscaffold_6G00410210 Rroxscaffold_7G00184320
rosa_rugosa Rorug02G0416100 Rorug02G0416200 Rorug02G0520900 Rorug02G0521200 Rorug02G0521300 Rorug02G0534600 Rorug03G0116300 Rorug03G0162900 Rorug03G0162900 Rorug04G0241400 Rorug05G0380900 Rorug07G0043800
rosa_samantha Rh1AG115300 Rh2BG483700 Rh2BG509900 Rh2BG515700 Rh2BG515800 Rh2BG586500 Rh2BG586600 Rh2BG586700 Rh2BG598800 Rh2BG598900 Rh2BG599100 Rh2BG618400 Rh2BG630500 Rh2CG457400 Rh2CG484900 Rh3AG165300 Rh3AG212900 Rh3AG213300 Rh3BG145800 Rh3BG146100 Rh3BG235300 Rh3BG246500 Rh3BG247000 Rh3BG247100 Rh3CG240300 Rh3CG240800 Rh3CG240900 Rh3CG259600 Rh3DG147000 Rh3DG184800 Rh3DG184900 Rh3DG185000 Rh3DG239500 Rh3DG240100 Rh3DG240200 Rh3DG255800 Rh5BG458500 Rh5CG480400 Rh7BG170400 Rh7BG407900 Rh7CG176900
rosa_wichuraiana Rw2G038990 Rw2G041550 Rw2G047660 Rw2G048940 Rw4G026370 Rw6G008730 Rw7G014600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 188
AccIII TCCGGA 1 cut(s) 190
AciI CCGC 4 cut(s) 147, 186, 534, 558
AclWI GGATC 1 cut(s) 254
AcoI YGGCCR 1 cut(s) 577
AcsI RAATTY 1 cut(s) 333
AfiI CCNNNNNNNGG 1 cut(s) 586
AjnI CCWGG 1 cut(s) 200
AluBI AGCT 4 cut(s) 257, 494, 552, 618
AluI AGCT 4 cut(s) 257, 494, 552, 618
AlwI GGATC 1 cut(s) 254
Aor13HI TCCGGA 1 cut(s) 190
AoxI GGCC 2 cut(s) 456, 577
ApeKI GCWGC 2 cut(s) 549, 615
ApoI RAATTY 1 cut(s) 333
AspLEI GCGC 1 cut(s) 369
AspS9I GGNCC 1 cut(s) 457
AsuC2I CCSGG 1 cut(s) 587
BalI TGGCCA 1 cut(s) 579
BbvI GCAGC 1 cut(s) 561
BccI CCATC 1 cut(s) 290
BceAI ACGGC 1 cut(s) 304
BciT130I CCWGG 1 cut(s) 202
BcnI CCSGG 1 cut(s) 587
BfaI CTAG 1 cut(s) 619
BisI GCNGC 3 cut(s) 147, 550, 616
BlsI GCNGC 3 cut(s) 148, 551, 617
Bme1390I CCNGG 2 cut(s) 202, 587
BmgT120I GGNCC 1 cut(s) 457
BmrFI CCNGG 2 cut(s) 202, 587
BmsI GCATC 1 cut(s) 171
BpuEI CTTGAG 1 cut(s) 443
BpuMI CCSGG 1 cut(s) 587
BsaJI CCNNGG 4 cut(s) 200, 242, 405, 586
BsaWI WCCGGW 1 cut(s) 190
BsaXI ACNNNNNCTCC 4 cut(s) 32, 62, 166, 196
Bsc4I CCNNNNNNNGG 1 cut(s) 586
Bse1I ACTGG 2 cut(s) 313, 580
Bse3DI GCAATG 2 cut(s) 376, 529
BseAI TCCGGA 1 cut(s) 190
BseBI CCWGG 1 cut(s) 202
BseDI CCNNGG 4 cut(s) 200, 242, 405, 586
BseGI GGATG 1 cut(s) 277
BseLI CCNNNNNNNGG 1 cut(s) 586
BseMI GCAATG 2 cut(s) 376, 529
BseNI ACTGG 2 cut(s) 313, 580
BseRI GAGGAG 2 cut(s) 41, 53
BseXI GCAGC 1 cut(s) 561
BshFI GGCC 2 cut(s) 458, 579
BsiSI CCGG 2 cut(s) 191, 586
BslI CCNNNNNNNGG 1 cut(s) 586
BsmI GAATGC 1 cut(s) 134
BsnI GGCC 2 cut(s) 458, 579
Bsp13I TCCGGA 1 cut(s) 190
Bsp143I GATC 1 cut(s) 246
BspACI CCGC 4 cut(s) 147, 186, 534, 558
BspANI GGCC 2 cut(s) 458, 579
BspEI TCCGGA 1 cut(s) 190
BspPI GGATC 1 cut(s) 254
BsrBI CCGCTC 1 cut(s) 188
BsrDI GCAATG 2 cut(s) 376, 529
BsrI ACTGG 2 cut(s) 313, 580
BssECI CCNNGG 4 cut(s) 200, 242, 405, 586
BssMI GATC 1 cut(s) 246
BssT1I CCWWGG 1 cut(s) 242
Bst2UI CCWGG 1 cut(s) 202
Bst4CI ACNGT 1 cut(s) 572
Bst6I CTCTTC 1 cut(s) 219
BstC8I GCNNGC 2 cut(s) 144, 496
BstF5I GGATG 1 cut(s) 277
BstHHI GCGC 1 cut(s) 369
BstKTI GATC 1 cut(s) 249
BstMBI GATC 1 cut(s) 246
BstMWI GCNNNNNNNGC 4 cut(s) 129, 238, 555, 615
BstNI CCWGG 1 cut(s) 202
BstSCI CCNGG 2 cut(s) 200, 585
BstV1I GCAGC 1 cut(s) 561
BsuRI GGCC 2 cut(s) 458, 579
BtgZI GCGATG 1 cut(s) 148
BtsCI GGATG 1 cut(s) 277
BtsI GCAGTG 1 cut(s) 399
BtsIMutI CAGTG 4 cut(s) 320, 399, 587, 602
Cac8I GCNNGC 2 cut(s) 144, 496
CfoI GCGC 1 cut(s) 369
Cfr13I GGNCC 1 cut(s) 457
CviAII CATG 1 cut(s) 477
DpnI GATC 1 cut(s) 248
DpnII GATC 1 cut(s) 246
DraI TTTAAA 1 cut(s) 444
EaeI YGGCCR 1 cut(s) 577
Eam1104I CTCTTC 1 cut(s) 219
EarI CTCTTC 1 cut(s) 219
Eco130I CCWWGG 1 cut(s) 242
EcoO109I RGGNCCY 1 cut(s) 457
EcoRII CCWGG 1 cut(s) 200
EcoT14I CCWWGG 1 cut(s) 242
EcoT22I ATGCAT 1 cut(s) 101
ErhI CCWWGG 1 cut(s) 242
FaeI CATG 1 cut(s) 480
FatI CATG 1 cut(s) 476
FauI CCCGC 1 cut(s) 193
FauNDI CATATG 1 cut(s) 449
Fnu4HI GCNGC 3 cut(s) 147, 550, 616
FokI GGATG 1 cut(s) 284
Fsp4HI GCNGC 3 cut(s) 147, 550, 616
FspBI CTAG 1 cut(s) 619
GlaI GCGC 1 cut(s) 368
GluI GCNGC 3 cut(s) 147, 550, 616
HaeIII GGCC 2 cut(s) 458, 579
HapII CCGG 2 cut(s) 191, 586
HhaI GCGC 1 cut(s) 369
Hin1II CATG 1 cut(s) 480
Hin6I GCGC 1 cut(s) 367
HinP1I GCGC 1 cut(s) 367
HincII GTYRAC 1 cut(s) 358
HindII GTYRAC 1 cut(s) 358
HinfI GANTC 1 cut(s) 216
HpaI GTTAAC 1 cut(s) 358
HpaII CCGG 2 cut(s) 191, 586
Hpy166II GTNNAC 2 cut(s) 358, 399
Hpy188I TCNGA 6 cut(s) 106, 271, 283, 305, 332, 409
Hpy188III TCNNGA 2 cut(s) 62, 191
Hpy8I GTNNAC 2 cut(s) 358, 399
HpyAV CCTTC 1 cut(s) 16
HpyCH4III ACNGT 1 cut(s) 572
HpyCH4IV ACGT 1 cut(s) 351
HpyCH4V TGCA 3 cut(s) 76, 99, 615
HpyF10VI GCNNNNNNNGC 4 cut(s) 129, 238, 555, 615
HpySE526I ACGT 1 cut(s) 351
Hsp92II CATG 1 cut(s) 480
HspAI GCGC 1 cut(s) 367
Kpn2I TCCGGA 1 cut(s) 190
KspAI GTTAAC 1 cut(s) 358
Kzo9I GATC 1 cut(s) 246
LmnI GCTCC 1 cut(s) 193
LpnPI CCDG 9 cut(s) 75, 187, 204, 214, 326, 473, 480, 593, 599
Lsp1109I GCAGC 1 cut(s) 561
LweI GCATC 1 cut(s) 171
MaeI CTAG 1 cut(s) 619
MaeII ACGT 1 cut(s) 351
MaeIII GTNAC 2 cut(s) 479, 566
MalI GATC 1 cut(s) 248
MbiI CCGCTC 1 cut(s) 188
MboI GATC 1 cut(s) 246
MboII GAAGA 3 cut(s) 31, 217, 236
MlsI TGGCCA 1 cut(s) 579
MluCI AATT 3 cut(s) 136, 333, 391
MluNI TGGCCA 1 cut(s) 579
MnlI CCTC 9 cut(s) 19, 22, 31, 36, 192, 415, 418, 448, 599
Mox20I TGGCCA 1 cut(s) 579
Mph1103I ATGCAT 1 cut(s) 101
MroI TCCGGA 1 cut(s) 190
MscI TGGCCA 1 cut(s) 579
MseI TTAA 3 cut(s) 357, 363, 443
Msp20I TGGCCA 1 cut(s) 579
MspA1I CMGCKG 1 cut(s) 552
MspI CCGG 2 cut(s) 191, 586
MspR9I CCNGG 2 cut(s) 202, 587
MssI GTTTAAAC 1 cut(s) 444
Mva1269I GAATGC 1 cut(s) 134
MvaI CCWGG 1 cut(s) 202
MwoI GCNNNNNNNGC 4 cut(s) 129, 238, 555, 615
NciI CCSGG 1 cut(s) 587
NdeI CATATG 1 cut(s) 449
NdeII GATC 1 cut(s) 246
NlaIII CATG 1 cut(s) 480
NmuCI GTSAC 2 cut(s) 479, 566
NsiI ATGCAT 1 cut(s) 101
PctI GAATGC 1 cut(s) 134
PfeI GAWTC 1 cut(s) 216
PkrI GCNGC 3 cut(s) 148, 551, 617
PmeI GTTTAAAC 1 cut(s) 444
Psp6I CCWGG 1 cut(s) 200
PspGI CCWGG 1 cut(s) 200
PspPI GGNCC 1 cut(s) 457
PvuII CAGCTG 1 cut(s) 552
SaqAI TTAA 3 cut(s) 357, 363, 443
SatI GCNGC 3 cut(s) 147, 550, 616
Sau3AI GATC 1 cut(s) 246
Sau96I GGNCC 1 cut(s) 457
ScrFI CCNGG 2 cut(s) 202, 587
SetI ASST 8 cut(s) 47, 259, 354, 472, 496, 526, 554, 620
SfaNI GCATC 1 cut(s) 171
SmlI CTYRAG 1 cut(s) 422
SmoI CTYRAG 1 cut(s) 422
Sse9I AATT 3 cut(s) 136, 333, 391
SsiI CCGC 4 cut(s) 147, 186, 534, 558
SspMI CTAG 1 cut(s) 619
StyD4I CCNGG 2 cut(s) 200, 585
StyI CCWWGG 1 cut(s) 242
TaaI ACNGT 1 cut(s) 572
TaiI ACGT 1 cut(s) 354
TaqI TCGA 2 cut(s) 50, 214
TasI AATT 3 cut(s) 136, 333, 391
TauI GCSGC 1 cut(s) 149
TfiI GAWTC 1 cut(s) 216
Tru1I TTAA 3 cut(s) 357, 363, 443
Tru9I TTAA 3 cut(s) 357, 363, 443
TscAI CASTG 4 cut(s) 320, 406, 587, 602
TseFI GTSAC 2 cut(s) 479, 566
TseI GCWGC 2 cut(s) 549, 615
Tsp45I GTSAC 2 cut(s) 479, 566
TspDTI ATGAA 3 cut(s) 250, 431, 504
TspRI CASTG 4 cut(s) 320, 406, 587, 602
XapI RAATTY 1 cut(s) 333
XcmI CCANNNNNNNNNTGG 1 cut(s) 587
XspI CTAG 1 cut(s) 619
Zsp2I ATGCAT 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.