Rmu_sc0010073.1_g000025

Protein of unknown function (DUF295)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010073.1
OG0000142
Physical Location & Seq
Forward (+)
127072 .. 127407
336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010073.1_g000025.1.cds

Sequence Viewer

Length: 336 bp
atgactgaatttttgatgaaacgtcctaattggtctcagaattttttcatcaatccaatgacaggggcttggcttatgctgccaccactggtgagcgcctgcccatggatctccctggcctctgcagatccaaaatgttccaaatgcattgtggcaccaattacatataacagaagtaggttggtgttttgcaggccacctgatgaatcgtggactctccaacagattaaagatgatgaacacatggctgaaattaaattcgaggatgggaagctatacgcaatgggacgggagtacgtagttgtttctgatcccttagaagttcttgatcaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

111

Amino Acids

12.8

Weight (kDa)

5.04

Isoelectric Point (pI)

39.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000142)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13532 FvH4_2g28870 FvH4_3g30930 FvH4_3g37281 FvH4_3g37300 FvH4_3g37301 FvH4_3g37301 FvH4_4g23711 FvH4_5g02330 FvH4_6g16960 FvH4_6g16971 FvH4_6g21291 FvH4_6g21331 FvH4_6g22212 FvH4_6g22332 FvH4_6g36920 FvH4_6g37552 FvH4_6g37591 FvH4_6g39721 FvH4_6g46020 FvH4_6g47001 FvH4_6g47002 FvH4_6g47130 FvH4_6g47140 FvH4_6g47161 FvH4_6g47170 FvH4_6g47190 FvH4_6g49120 FvH4_6g49280 FvH4_6g49281 FvH4_6g49640 FvH4_6g49640
malus_domestica MD03G1085600.v1.1 MD09G1027500.v1.1 MD09G1050100.v1.1
prunus_persica Prupe.1G004300_v2.0.a1 Prupe.1G016300_v2.0.a1 Prupe.1G019300_v2.0.a1 Prupe.3G239100_v2.0.a1 Prupe.3G291200_v2.0.a1
pyrus_communis pycom08g02840 pycom08g02860 pycom08g02870
rosa_chinensis RchiOBHm_Chr2g0153831 RchiOBHm_Chr2g0166171 RchiOBHm_Chr2g0166201 RchiOBHm_Chr3g0476221 RchiOBHm_Chr4g0430971 RchiOBHm_Chr5g0067081 RchiOBHm_Chr7g0197821
rosa_laevigata RLG00000001284 RLG00000006996 RLG00000012710 RLG00000019299 RLG00000020285 RLG00000020444 RLG00000020466 RLG00000020591 RLG00000020665 RLG00000020730 RLG00000020732 RLG00000021449 RLG00000021592 RLG00000021593 RLG00000021594 RLG00000021596 RLG00000021597 RLG00000021801 RLG00000023534 RLG00000023538 RLG00000023693 RLG00000023694 RLG00000023699 RLG00000024196 RLG00000024214 RLG00000024220 RLG00000024244 RLG00000024608 RLG00000024612 RLG00000035157 RLG00000035906
rosa_multiflora Rmu_co8282815.1_g000001 Rmu_co8380495.1_g000001 Rmu_co8381111.1_g000001 Rmu_co8460513.1_g000001 Rmu_co8481947.1_g000001 Rmu_co8487937.1_g000001 Rmu_sc0000151.1_g000017 Rmu_sc0001427.1_g000003 Rmu_sc0001427.1_g000006 Rmu_sc0002611.1_g000008 Rmu_sc0003887.1_g000018 Rmu_sc0003887.1_g000019 Rmu_sc0003887.1_g000021 Rmu_sc0004119.1_g000004 Rmu_sc0004329.1_g000003 Rmu_sc0004485.1_g000024 Rmu_sc0005290.1_g000001 Rmu_sc0005609.1_g000006 Rmu_sc0006187.1_g000018 Rmu_sc0006218.1_g000032 Rmu_sc0006218.1_g000033 Rmu_sc0007150.1_g000003 Rmu_sc0007154.1_g000004 Rmu_sc0007154.1_g000005 Rmu_sc0007154.1_g000007 Rmu_sc0008314.1_g000012 Rmu_sc0010073.1_g000023 Rmu_sc0010073.1_g000025 Rmu_sc0011216.1_g000008 Rmu_sc0012445.1_g000005 Rmu_sc0013571.1_g000002 Rmu_sc0018648.1_g000002 Rmu_sc0020961.1_g000002 Rmu_sc0020961.1_g000003 Rmu_sc0023710.1_g000001 Rmu_sc0031310.1_g000008 Rmu_sc0033940.1_g000001 Rmu_sc0035493.1_g000001 Rmu_sc0039285.1_g000001
rosa_roxburghii Rroxscaffold_1G00014000 Rroxscaffold_1G00014020 Rroxscaffold_2G00082760 Rroxscaffold_2G00085090 Rroxscaffold_2G00085100 Rroxscaffold_2G00085140 Rroxscaffold_2G00086670 Rroxscaffold_2G00086680 Rroxscaffold_2G00098190 Rroxscaffold_2G00099270 Rroxscaffold_3G00227460 Rroxscaffold_3G00258190 Rroxscaffold_3G00259780 Rroxscaffold_6G00402940 Rroxscaffold_6G00410200 Rroxscaffold_6G00410210 Rroxscaffold_7G00184320
rosa_rugosa Rorug02G0416100 Rorug02G0416200 Rorug02G0520900 Rorug02G0521200 Rorug02G0521300 Rorug02G0534600 Rorug03G0116300 Rorug03G0162900 Rorug03G0162900 Rorug04G0241400 Rorug05G0380900 Rorug07G0043800
rosa_samantha Rh1AG115300 Rh2BG483700 Rh2BG509900 Rh2BG515700 Rh2BG515800 Rh2BG586500 Rh2BG586600 Rh2BG586700 Rh2BG598800 Rh2BG598900 Rh2BG599100 Rh2BG618400 Rh2BG630500 Rh2CG457400 Rh2CG484900 Rh3AG165300 Rh3AG212900 Rh3AG213300 Rh3BG145800 Rh3BG146100 Rh3BG235300 Rh3BG246500 Rh3BG247000 Rh3BG247100 Rh3CG240300 Rh3CG240800 Rh3CG240900 Rh3CG259600 Rh3DG147000 Rh3DG184800 Rh3DG184900 Rh3DG185000 Rh3DG239500 Rh3DG240100 Rh3DG240200 Rh3DG255800 Rh5BG458500 Rh5CG480400 Rh7BG170400 Rh7BG407900 Rh7CG176900
rosa_wichuraiana Rw2G038990 Rw2G041550 Rw2G047660 Rw2G048940 Rw4G026370 Rw6G008730 Rw7G014600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 154
AclWI GGATC 3 cut(s) 116, 122, 305
AcsI RAATTY 3 cut(s) 8, 40, 257
AfaI GTAC 1 cut(s) 296
AfiI CCNNNNNNNGG 2 cut(s) 62, 105
AjnI CCWGG 1 cut(s) 114
AluBI AGCT 1 cut(s) 274
AluI AGCT 1 cut(s) 274
Alw26I GTCTC 1 cut(s) 39
AlwI GGATC 3 cut(s) 116, 122, 305
AoxI GGCC 2 cut(s) 117, 194
ApeKI GCWGC 1 cut(s) 79
ApoI RAATTY 3 cut(s) 8, 40, 257
ArsI GACNNNNNNTTYG 1 cut(s) 27
Asp700I GAANNNNTTC 1 cut(s) 44
AspLEI GCGC 1 cut(s) 98
AsuHPI GGTGA 1 cut(s) 103
BanI GGYRCC 1 cut(s) 154
BbvI GCAGC 1 cut(s) 66
BccI CCATC 1 cut(s) 260
BciT130I CCWGG 1 cut(s) 116
BclI TGATCA 1 cut(s) 328
BcoDI GTCTC 1 cut(s) 39
BfmI CTRYAG 1 cut(s) 123
BfoI RGCGCY 1 cut(s) 99
BisI GCNGC 1 cut(s) 80
BlsI GCNGC 1 cut(s) 81
Bme1390I CCNGG 1 cut(s) 116
BmiI GGNNCC 1 cut(s) 156
BmrFI CCNGG 1 cut(s) 116
BsaAI YACGTR 1 cut(s) 298
BsaI GGTCTC 1 cut(s) 39
BsaJI CCNNGG 2 cut(s) 104, 114
Bsc4I CCNNNNNNNGG 2 cut(s) 62, 105
Bse1I ACTGG 1 cut(s) 93
Bse3DI GCAATG 1 cut(s) 288
BseBI CCWGG 1 cut(s) 116
BseDI CCNNGG 2 cut(s) 104, 114
BseGI GGATG 1 cut(s) 271
BseLI CCNNNNNNNGG 2 cut(s) 62, 105
BseMI GCAATG 1 cut(s) 288
BseMII CTCAG 1 cut(s) 50
BseNI ACTGG 1 cut(s) 93
BseXI GCAGC 1 cut(s) 66
BshFI GGCC 2 cut(s) 119, 196
BshNI GGYRCC 1 cut(s) 154
BslFI GGGAC 1 cut(s) 300
BslI CCNNNNNNNGG 2 cut(s) 62, 105
BsmAI GTCTC 1 cut(s) 39
BsmFI GGGAC 1 cut(s) 300
BsnI GGCC 2 cut(s) 119, 196
Bso31I GGTCTC 1 cut(s) 39
Bsp143I GATC 4 cut(s) 108, 127, 310, 328
Bsp19I CCATGG 1 cut(s) 104
BspANI GGCC 2 cut(s) 119, 196
BspCNI CTCAG 1 cut(s) 49
BspLI GGNNCC 1 cut(s) 156
BspMAI CTGCAG 1 cut(s) 127
BspPI GGATC 3 cut(s) 116, 122, 305
BspT107I GGYRCC 1 cut(s) 154
BspTNI GGTCTC 1 cut(s) 39
BsrDI GCAATG 1 cut(s) 288
BsrI ACTGG 1 cut(s) 93
BssECI CCNNGG 2 cut(s) 104, 114
BssMI GATC 4 cut(s) 108, 127, 310, 328
BssT1I CCWWGG 1 cut(s) 104
Bst2UI CCWGG 1 cut(s) 116
BstBAI YACGTR 1 cut(s) 298
BstC8I GCNNGC 2 cut(s) 100, 194
BstDEI CTNAG 2 cut(s) 36, 316
BstDSI CCRYGG 1 cut(s) 104
BstF5I GGATG 1 cut(s) 271
BstH2I RGCGCY 1 cut(s) 99
BstHHI GCGC 1 cut(s) 98
BstKTI GATC 4 cut(s) 111, 130, 313, 331
BstMAI GTCTC 1 cut(s) 39
BstMBI GATC 4 cut(s) 108, 127, 310, 328
BstMWI GCNNNNNNNGC 1 cut(s) 79
BstNI CCWGG 1 cut(s) 116
BstSCI CCNGG 1 cut(s) 114
BstSFI CTRYAG 1 cut(s) 123
BstSNI TACGTA 1 cut(s) 298
BstV1I GCAGC 1 cut(s) 66
BstX2I RGATCY 2 cut(s) 108, 127
BstYI RGATCY 2 cut(s) 108, 127
BsuRI GGCC 2 cut(s) 119, 196
BtgI CCRYGG 1 cut(s) 104
BtsCI GGATG 1 cut(s) 271
BtsIMutI CAGTG 1 cut(s) 86
Cac8I GCNNGC 2 cut(s) 100, 194
CfoI GCGC 1 cut(s) 98
Csp6I GTAC 1 cut(s) 295
CviAII CATG 2 cut(s) 105, 244
CviJI RGCY 6 cut(s) 68, 73, 119, 196, 248, 274
CviKI_1 RGCY 6 cut(s) 68, 73, 119, 196, 248, 274
CviQI GTAC 1 cut(s) 295
DdeI CTNAG 2 cut(s) 36, 316
DpnI GATC 4 cut(s) 110, 129, 312, 330
DpnII GATC 4 cut(s) 108, 127, 310, 328
Eco105I TACGTA 1 cut(s) 298
Eco130I CCWWGG 1 cut(s) 104
Eco31I GGTCTC 1 cut(s) 39
EcoRII CCWGG 1 cut(s) 114
EcoT14I CCWWGG 1 cut(s) 104
EcoT22I ATGCAT 1 cut(s) 149
ErhI CCWWGG 1 cut(s) 104
FaeI CATG 2 cut(s) 108, 247
FaiI YATR 6 cut(s) 77, 106, 166, 168, 245, 277
FaqI GGGAC 1 cut(s) 300
FatI CATG 2 cut(s) 104, 243
FbaI TGATCA 1 cut(s) 328
Fnu4HI GCNGC 1 cut(s) 80
FokI GGATG 1 cut(s) 278
Fsp4HI GCNGC 1 cut(s) 80
GlaI GCGC 1 cut(s) 97
GluI GCNGC 1 cut(s) 80
HaeII RGCGCY 1 cut(s) 99
HaeIII GGCC 2 cut(s) 119, 196
HhaI GCGC 1 cut(s) 98
Hin1II CATG 2 cut(s) 108, 247
Hin6I GCGC 1 cut(s) 96
HinP1I GCGC 1 cut(s) 96
HinfI GANTC 2 cut(s) 206, 214
HphI GGTGA 1 cut(s) 103
Hpy166II GTNNAC 1 cut(s) 213
Hpy188I TCNGA 2 cut(s) 39, 310
Hpy188III TCNNGA 1 cut(s) 326
Hpy8I GTNNAC 1 cut(s) 213
HpyCH4IV ACGT 2 cut(s) 22, 297
HpyCH4V TGCA 3 cut(s) 125, 147, 192
HpyF10VI GCNNNNNNNGC 1 cut(s) 79
HpyF3I CTNAG 2 cut(s) 36, 316
HpySE526I ACGT 2 cut(s) 22, 297
Hsp92II CATG 2 cut(s) 108, 247
HspAI GCGC 1 cut(s) 96
Ksp22I TGATCA 1 cut(s) 328
Kzo9I GATC 4 cut(s) 108, 127, 310, 328
LpnPI CCDG 7 cut(s) 48, 74, 101, 112, 128, 178, 213
Lsp1109I GCAGC 1 cut(s) 66
MaeII ACGT 2 cut(s) 22, 297
MalI GATC 4 cut(s) 110, 129, 312, 330
MboI GATC 4 cut(s) 108, 127, 310, 328
MflI RGATCY 2 cut(s) 108, 127
MluCI AATT 6 cut(s) 8, 28, 40, 159, 252, 257
MlyI GAGTC 1 cut(s) 208
MmeI TCCRAC 1 cut(s) 244
MnlI CCTC 2 cut(s) 130, 256
Mph1103I ATGCAT 1 cut(s) 149
MroXI GAANNNNTTC 1 cut(s) 44
MseI TTAA 2 cut(s) 228, 255
MspR9I CCNGG 1 cut(s) 116
MvaI CCWGG 1 cut(s) 116
MwoI GCNNNNNNNGC 1 cut(s) 79
NcoI CCATGG 1 cut(s) 104
NdeII GATC 4 cut(s) 108, 127, 310, 328
NlaIII CATG 2 cut(s) 108, 247
NlaIV GGNNCC 1 cut(s) 156
NsiI ATGCAT 1 cut(s) 149
PdmI GAANNNNTTC 1 cut(s) 44
PfeI GAWTC 1 cut(s) 206
PkrI GCNGC 1 cut(s) 81
PleI GAGTC 1 cut(s) 208
PpsI GAGTC 1 cut(s) 208
Ppu21I YACGTR 1 cut(s) 298
Psp6I CCWGG 1 cut(s) 114
PspGI CCWGG 1 cut(s) 114
PspN4I GGNNCC 1 cut(s) 156
PstI CTGCAG 1 cut(s) 127
PsuI RGATCY 2 cut(s) 108, 127
RsaI GTAC 1 cut(s) 296
RsaNI GTAC 1 cut(s) 295
SaqAI TTAA 2 cut(s) 228, 255
SatI GCNGC 1 cut(s) 80
Sau3AI GATC 4 cut(s) 108, 127, 310, 328
SchI GAGTC 1 cut(s) 208
ScrFI CCNGG 1 cut(s) 116
SetI ASST 5 cut(s) 25, 182, 202, 276, 300
SfcI CTRYAG 1 cut(s) 123
SnaBI TACGTA 1 cut(s) 298
Sse9I AATT 6 cut(s) 8, 28, 40, 159, 252, 257
StyD4I CCNGG 1 cut(s) 114
StyI CCWWGG 1 cut(s) 104
TaiI ACGT 2 cut(s) 25, 300
TaqI TCGA 1 cut(s) 261
TasI AATT 6 cut(s) 8, 28, 40, 159, 252, 257
TfiI GAWTC 1 cut(s) 206
Tru1I TTAA 2 cut(s) 228, 255
Tru9I TTAA 2 cut(s) 228, 255
TscAI CASTG 1 cut(s) 93
TseI GCWGC 1 cut(s) 79
TspDTI ATGAA 4 cut(s) 32, 37, 219, 252
TspRI CASTG 1 cut(s) 93
XapI RAATTY 3 cut(s) 8, 40, 257
XcmI CCANNNNNNNNNTGG 1 cut(s) 148
XmnI GAANNNNTTC 1 cut(s) 44
Zsp2I ATGCAT 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.