Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000142

Physical Location & Seq

Genomic Coordinates Forward (+)

72439414 .. 72444119

Gene Structure 4706 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG515700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGCTTTTGCTCGATTCTTGTTATTCATACTACATCAAAGATGGCTGCCTCGTTATCACTTCTTCCTCTTGAACCCCGTATTAGGAGCTCAAATTATGCTCCCATCACATTCCGCAGGTAAAGTCTATAAAATAAAAGCAGCAGCCTCTTCAATACCAACGGAAACAAGGTTGCAGCAGCCGCGGCGGCTGTGTTATGTGTCTTGCCTTGTTTCTTGCATTGACGTTGAAAAACAAGGTCAGTTGGCTTTTTGTGCCCCCGGTGATAAATCATGGACCTCCATTGAGGCCGAGGCGGCGGAGTGGGATGATATGGCTCTAGGATTTCTGGATATAGAAATAGTTGATGGGAAATTATATGCGGTAGGTAGCCACGCATTAGAGTTTTTAATGGTGTTTGACATTGAATTAGATACCAATGGCTGCGGAATTCATACCTGCACAGCGCAAAGGTTGGTTACTCATCACCCCAACTTTGAGAGCGTCGTTGAAGACAGAGTTTACCATCGGATTTGTTACCTAGCAAAAGGTTCTGAATCAAATGAGTTGTTTATGATTTTGCATAAGCATCATCGTTACACGACCAGAGGATTTCAAGTGTTGAAGTTGGAGTATAATGTTACGACTGGTCCTCAGTGGGTAGAGATTGTTGACCTCGGTGATCAAGTATTATTTATCAGTGGGCTCAACAACAAATTTATCTCTCTCGGTAGTACTTTTCATGATAAAACAATTGAAAAAAACTCAATTTATTTTATTTTCGATTCGTCCAAAACATACGAATGTGGGGTGTTTTCCTTGACAAATAGGAGCATCATACCTTTGAATAGTCCCAAGGATCATTTGCATATGGAAATGGATCGTACTGTTTGGTTCACACCAAATTTTTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000463 GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0010468 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0022613 GO:0030684 GO:0030686 GO:0031323 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044087 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0070545 GO:0071704 GO:0071840 GO:0080090 GO:0090069 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904 GO:2000232

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT_2 Pescadillo_N

Protein Analysis

297

Amino Acids

34.05

Weight (kDa)

6.26

Isoelectric Point (pI)

33.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	18 - 266	2e-28	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000142)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13532 FvH4_2g28870 FvH4_3g30930 FvH4_3g37281 FvH4_3g37300 FvH4_3g37301 FvH4_3g37301 FvH4_4g23711 FvH4_5g02330 FvH4_6g16960 FvH4_6g16971 FvH4_6g21291 FvH4_6g21331 FvH4_6g22212 FvH4_6g22332 FvH4_6g36920 FvH4_6g37552 FvH4_6g37591 FvH4_6g39721 FvH4_6g46020 FvH4_6g47001 FvH4_6g47002 FvH4_6g47130 FvH4_6g47140 FvH4_6g47161 FvH4_6g47170 FvH4_6g47190 FvH4_6g49120 FvH4_6g49280 FvH4_6g49281 FvH4_6g49640 FvH4_6g49640
malus_domestica	MD03G1085600.v1.1 MD09G1027500.v1.1 MD09G1050100.v1.1
prunus_persica	Prupe.1G004300_v2.0.a1 Prupe.1G016300_v2.0.a1 Prupe.1G019300_v2.0.a1 Prupe.3G239100_v2.0.a1 Prupe.3G291200_v2.0.a1
pyrus_communis	pycom08g02840 pycom08g02860 pycom08g02870
rosa_chinensis	RchiOBHm_Chr2g0153831 RchiOBHm_Chr2g0166171 RchiOBHm_Chr2g0166201 RchiOBHm_Chr3g0476221 RchiOBHm_Chr4g0430971 RchiOBHm_Chr5g0067081 RchiOBHm_Chr7g0197821
rosa_laevigata	RLG00000001284 RLG00000006996 RLG00000012710 RLG00000019299 RLG00000020285 RLG00000020444 RLG00000020466 RLG00000020591 RLG00000020665 RLG00000020730 RLG00000020732 RLG00000021449 RLG00000021592 RLG00000021593 RLG00000021594 RLG00000021596 RLG00000021597 RLG00000021801 RLG00000023534 RLG00000023538 RLG00000023693 RLG00000023694 RLG00000023699 RLG00000024196 RLG00000024214 RLG00000024220 RLG00000024244 RLG00000024608 RLG00000024612 RLG00000035157 RLG00000035906
rosa_multiflora	Rmu_co8282815.1_g000001 Rmu_co8380495.1_g000001 Rmu_co8381111.1_g000001 Rmu_co8460513.1_g000001 Rmu_co8481947.1_g000001 Rmu_co8487937.1_g000001 Rmu_sc0000151.1_g000017 Rmu_sc0001427.1_g000003 Rmu_sc0001427.1_g000006 Rmu_sc0002611.1_g000008 Rmu_sc0003887.1_g000018 Rmu_sc0003887.1_g000019 Rmu_sc0003887.1_g000021 Rmu_sc0004119.1_g000004 Rmu_sc0004329.1_g000003 Rmu_sc0004485.1_g000024 Rmu_sc0005290.1_g000001 Rmu_sc0005609.1_g000006 Rmu_sc0006187.1_g000018 Rmu_sc0006218.1_g000032 Rmu_sc0006218.1_g000033 Rmu_sc0007150.1_g000003 Rmu_sc0007154.1_g000004 Rmu_sc0007154.1_g000005 Rmu_sc0007154.1_g000007 Rmu_sc0008314.1_g000012 Rmu_sc0010073.1_g000023 Rmu_sc0010073.1_g000025 Rmu_sc0011216.1_g000008 Rmu_sc0012445.1_g000005 Rmu_sc0013571.1_g000002 Rmu_sc0018648.1_g000002 Rmu_sc0020961.1_g000002 Rmu_sc0020961.1_g000003 Rmu_sc0023710.1_g000001 Rmu_sc0031310.1_g000008 Rmu_sc0033940.1_g000001 Rmu_sc0035493.1_g000001 Rmu_sc0039285.1_g000001
rosa_roxburghii	Rroxscaffold_1G00014000 Rroxscaffold_1G00014020 Rroxscaffold_2G00082760 Rroxscaffold_2G00085090 Rroxscaffold_2G00085100 Rroxscaffold_2G00085140 Rroxscaffold_2G00086670 Rroxscaffold_2G00086680 Rroxscaffold_2G00098190 Rroxscaffold_2G00099270 Rroxscaffold_3G00227460 Rroxscaffold_3G00258190 Rroxscaffold_3G00259780 Rroxscaffold_6G00402940 Rroxscaffold_6G00410200 Rroxscaffold_6G00410210 Rroxscaffold_7G00184320
rosa_rugosa	Rorug02G0416100 Rorug02G0416200 Rorug02G0520900 Rorug02G0521200 Rorug02G0521300 Rorug02G0534600 Rorug03G0116300 Rorug03G0162900 Rorug03G0162900 Rorug04G0241400 Rorug05G0380900 Rorug07G0043800
rosa_samantha	Rh1AG115300 Rh2BG483700 Rh2BG509900 Rh2BG515700 Rh2BG515800 Rh2BG586500 Rh2BG586600 Rh2BG586700 Rh2BG598800 Rh2BG598900 Rh2BG599100 Rh2BG618400 Rh2BG630500 Rh2CG457400 Rh2CG484900 Rh3AG165300 Rh3AG212900 Rh3AG213300 Rh3BG145800 Rh3BG146100 Rh3BG235300 Rh3BG246500 Rh3BG247000 Rh3BG247100 Rh3CG240300 Rh3CG240800 Rh3CG240900 Rh3CG259600 Rh3DG147000 Rh3DG184800 Rh3DG184900 Rh3DG185000 Rh3DG239500 Rh3DG240100 Rh3DG240200 Rh3DG255800 Rh5BG458500 Rh5CG480400 Rh7BG170400 Rh7BG407900 Rh7CG176900
rosa_wichuraiana	Rw2G038990 Rw2G041550 Rw2G047660 Rw2G048940 Rw4G026370 Rw6G008730 Rw7G014600

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	107, 446
AccII	CGCG	1 cut(s)	184
AciI	CCGC	8 cut(s)	114, 182, 184, 187, 296, 299, 362, 426
AclWI	GGATC	2 cut(s)	846, 867
AcsI	RAATTY	3 cut(s)	429, 695, 883
AfaI	GTAC	2 cut(s)	715, 865
AfiI	CCNNNNNNNGG	1 cut(s)	83
AgsI	TTSAA	9 cut(s)	73, 153, 230, 407, 491, 596, 604, 737, 826
AluBI	AGCT	1 cut(s)	89
AluI	AGCT	1 cut(s)	89
Alw21I	GWGCWC	1 cut(s)	91
AlwI	GGATC	2 cut(s)	846, 867
AoxI	GGCC	1 cut(s)	288
ApeKI	GCWGC	6 cut(s)	46, 140, 143, 175, 178, 423
ApoI	RAATTY	3 cut(s)	429, 695, 883
AspLEI	GCGC	1 cut(s)	448
AspS9I	GGNCC	2 cut(s)	276, 629
AsuC2I	CCSGG	1 cut(s)	261
AsuHPI	GGTGA	3 cut(s)	275, 458, 671
AvaII	GGWCC	2 cut(s)	276, 629
BaeGI	GKGCMC	1 cut(s)	259
BanII	GRGCYC	2 cut(s)	91, 687
BbsI	GAAGAC	1 cut(s)	498
Bbv12I	GWGCWC	1 cut(s)	91
BbvI	GCAGC	6 cut(s)	33, 152, 155, 187, 190, 410
BccI	CCATC	4 cut(s)	36, 112, 341, 513
BclI	TGATCA	1 cut(s)	661
BcnI	CCSGG	1 cut(s)	261
BfaI	CTAG	2 cut(s)	320, 521
BfuAI	ACCTGC	2 cut(s)	107, 446
BglI	GCCNNNNNGGC	2 cut(s)	187, 296
BmcAI	AGTACT	1 cut(s)	715
Bme1390I	CCNGG	1 cut(s)	261
Bme18I	GGWCC	2 cut(s)	276, 629
BmgT120I	GGNCC	2 cut(s)	276, 629
BmrFI	CCNGG	1 cut(s)	261
BmsI	GCATC	2 cut(s)	577, 822
BpiI	GAAGAC	1 cut(s)	498
BpuMI	CCSGG	1 cut(s)	261
BsaJI	CCNNGG	5 cut(s)	182, 259, 291, 655, 834
Bsc4I	CCNNNNNNNGG	1 cut(s)	83
Bse1I	ACTGG	1 cut(s)	631
BseDI	CCNNGG	5 cut(s)	182, 259, 291, 655, 834
BseGI	GGATG	1 cut(s)	313
BseLI	CCNNNNNNNGG	1 cut(s)	83
BseMII	CTCAG	1 cut(s)	647
BseNI	ACTGG	1 cut(s)	631
BseSI	GKGCMC	1 cut(s)	259
BseXI	GCAGC	6 cut(s)	33, 152, 155, 187, 190, 410
BsgI	GTGCAG	1 cut(s)	424
Bsh1236I	CGCG	1 cut(s)	184
BshFI	GGCC	1 cut(s)	290
BsiHKAI	GWGCWC	1 cut(s)	91
BsiSI	CCGG	1 cut(s)	261
BslFI	GGGAC	1 cut(s)	816
BslI	CCNNNNNNNGG	1 cut(s)	83
BsmFI	GGGAC	1 cut(s)	816
BsnI	GGCC	1 cut(s)	290
Bsp1286I	GDGCHC	3 cut(s)	91, 259, 687
Bsp143I	GATC	3 cut(s)	661, 838, 859
BspACI	CCGC	8 cut(s)	114, 182, 184, 187, 296, 299, 362, 426
BspANI	GGCC	1 cut(s)	290
BspCNI	CTCAG	1 cut(s)	646
BspFNI	CGCG	1 cut(s)	184
BspHI	TCATGA	1 cut(s)	721
BspMI	ACCTGC	2 cut(s)	107, 446
BspPI	GGATC	2 cut(s)	846, 867
BsrI	ACTGG	1 cut(s)	631
BssECI	CCNNGG	5 cut(s)	182, 259, 291, 655, 834
BssMI	GATC	3 cut(s)	661, 838, 859
BssT1I	CCWWGG	1 cut(s)	834
Bst4CI	ACNGT	1 cut(s)	868
Bst6I	CTCTTC	1 cut(s)	154
BstDEI	CTNAG	1 cut(s)	633
BstDSI	CCRYGG	1 cut(s)	182
BstF5I	GGATG	1 cut(s)	313
BstFNI	CGCG	1 cut(s)	184
BstHHI	GCGC	1 cut(s)	448
BstKTI	GATC	3 cut(s)	664, 841, 862
BstMBI	GATC	3 cut(s)	661, 838, 859
BstMWI	GCNNNNNNNGC	5 cut(s)	181, 184, 187, 254, 296
BstSCI	CCNGG	1 cut(s)	259
BstSLI	GKGCMC	1 cut(s)	259
BstUI	CGCG	1 cut(s)	184
BstV1I	GCAGC	6 cut(s)	33, 152, 155, 187, 190, 410
BstV2I	GAAGAC	1 cut(s)	498
BstXI	CCANNNNNNTGG	1 cut(s)	888
BsuRI	GGCC	1 cut(s)	290
BtgI	CCRYGG	1 cut(s)	182
BtsCI	GGATG	1 cut(s)	313
BtsIMutI	CAGTG	2 cut(s)	641, 685
BveI	ACCTGC	2 cut(s)	107, 446
CciI	TCATGA	1 cut(s)	721
CfoI	GCGC	1 cut(s)	448
Cfr13I	GGNCC	2 cut(s)	276, 629
Cfr42I	CCGCGG	1 cut(s)	185
CseI	GACGC	1 cut(s)	472
Csp6I	GTAC	2 cut(s)	714, 864
CviAII	CATG	2 cut(s)	273, 722
CviQI	GTAC	2 cut(s)	714, 864
DdeI	CTNAG	1 cut(s)	633
DpnI	GATC	3 cut(s)	663, 840, 861
DpnII	GATC	3 cut(s)	661, 838, 859
Eam1104I	CTCTTC	1 cut(s)	154
EarI	CTCTTC	1 cut(s)	154
EciI	GGCGGA	1 cut(s)	314
Ecl136II	GAGCTC	1 cut(s)	89
Eco130I	CCWWGG	1 cut(s)	834
Eco24I	GRGCYC	2 cut(s)	91, 687
Eco47I	GGWCC	2 cut(s)	276, 629
Eco53kI	GAGCTC	1 cut(s)	89
EcoICRI	GAGCTC	1 cut(s)	89
EcoRI	GAATTC	1 cut(s)	429
EcoT14I	CCWWGG	1 cut(s)	834
EcoT38I	GRGCYC	2 cut(s)	91, 687
ErhI	CCWWGG	1 cut(s)	834
FaeI	CATG	2 cut(s)	276, 725
FaqI	GGGAC	1 cut(s)	816
FatI	CATG	2 cut(s)	272, 721
FauNDI	CATATG	1 cut(s)	849
FbaI	TGATCA	1 cut(s)	661
FokI	GGATG	1 cut(s)	320
FriOI	GRGCYC	2 cut(s)	91, 687
FspBI	CTAG	2 cut(s)	320, 521
GlaI	GCGC	1 cut(s)	447
HaeIII	GGCC	1 cut(s)	290
HapII	CCGG	1 cut(s)	261
HgaI	GACGC	1 cut(s)	472
HhaI	GCGC	1 cut(s)	448
Hin1II	CATG	2 cut(s)	276, 725
Hin6I	GCGC	1 cut(s)	446
HinP1I	GCGC	1 cut(s)	446
HincII	GTYRAC	1 cut(s)	652
HindII	GTYRAC	1 cut(s)	652
HinfI	GANTC	3 cut(s)	15, 536, 764
HpaII	CCGG	1 cut(s)	261
HphI	GGTGA	3 cut(s)	275, 458, 671
Hpy166II	GTNNAC	3 cut(s)	502, 652, 876
Hpy188I	TCNGA	2 cut(s)	510, 535
Hpy188III	TCNNGA	3 cut(s)	70, 329, 722
Hpy8I	GTNNAC	3 cut(s)	502, 652, 876
Hpy99I	CGWCG	1 cut(s)	488
HpyCH4III	ACNGT	1 cut(s)	868
HpyCH4IV	ACGT	1 cut(s)	225
HpyCH4V	TGCA	5 cut(s)	175, 219, 441, 562, 847
HpyF10VI	GCNNNNNNNGC	5 cut(s)	181, 184, 187, 254, 296
HpyF3I	CTNAG	1 cut(s)	633
HpySE526I	ACGT	1 cut(s)	225
Hsp92II	CATG	2 cut(s)	276, 725
HspAI	GCGC	1 cut(s)	446
Ksp22I	TGATCA	1 cut(s)	661
KspI	CCGCGG	1 cut(s)	185
Kzo9I	GATC	3 cut(s)	661, 838, 859
LmnI	GCTCC	3 cut(s)	86, 105, 810
LpnPI	CCDG	6 cut(s)	102, 274, 314, 451, 598, 612
Lsp1109I	GCAGC	6 cut(s)	33, 152, 155, 187, 190, 410
LweI	GCATC	2 cut(s)	577, 822
MaeI	CTAG	2 cut(s)	320, 521
MaeII	ACGT	1 cut(s)	225
MaeIII	GTNAC	4 cut(s)	457, 515, 575, 619
MalI	GATC	3 cut(s)	663, 840, 861
MboI	GATC	3 cut(s)	661, 838, 859
MboII	GAAGA	3 cut(s)	55, 141, 503
MfeI	CAATTG	1 cut(s)	732
MhlI	GDGCHC	3 cut(s)	91, 259, 687
MluCI	AATT	8 cut(s)	93, 353, 407, 429, 695, 732, 747, 883
MmeI	TCCRAC	1 cut(s)	588
MnlI	CCTC	9 cut(s)	60, 77, 157, 280, 286, 289, 581, 642, 665
MseI	TTAA	1 cut(s)	389
MslI	CAYNNNNRTG	1 cut(s)	781
MspA1I	CMGCKG	1 cut(s)	184
MspI	CCGG	1 cut(s)	261
MspR9I	CCNGG	1 cut(s)	261
MunI	CAATTG	1 cut(s)	732
MvnI	CGCG	1 cut(s)	184
MwoI	GCNNNNNNNGC	5 cut(s)	181, 184, 187, 254, 296
NciI	CCSGG	1 cut(s)	261
NdeI	CATATG	1 cut(s)	849
NdeII	GATC	3 cut(s)	661, 838, 859
NlaIII	CATG	2 cut(s)	276, 725
NmeAIII	GCCGAG	1 cut(s)	316
PagI	TCATGA	1 cut(s)	721
PfeI	GAWTC	3 cut(s)	15, 536, 764
Psp124BI	GAGCTC	1 cut(s)	91
PspPI	GGNCC	2 cut(s)	276, 629
RsaI	GTAC	2 cut(s)	715, 865
RsaNI	GTAC	2 cut(s)	714, 864
RseI	CAYNNNNRTG	1 cut(s)	781
SacI	GAGCTC	1 cut(s)	91
SacII	CCGCGG	1 cut(s)	185
SaqAI	TTAA	1 cut(s)	389
Sau3AI	GATC	3 cut(s)	661, 838, 859
Sau96I	GGNCC	2 cut(s)	276, 629
ScaI	AGTACT	1 cut(s)	715
ScrFI	CCNGG	1 cut(s)	261
SduI	GDGCHC	3 cut(s)	91, 259, 687
SfaNI	GCATC	2 cut(s)	577, 822
Sfr303I	CCGCGG	1 cut(s)	185
SgrBI	CCGCGG	1 cut(s)	185
SinI	GGWCC	2 cut(s)	276, 629
SmiMI	CAYNNNNRTG	1 cut(s)	781
Sse9I	AATT	8 cut(s)	93, 353, 407, 429, 695, 732, 747, 883
SsiI	CCGC	8 cut(s)	114, 182, 184, 187, 296, 299, 362, 426
SspMI	CTAG	2 cut(s)	320, 521
SstI	GAGCTC	1 cut(s)	91
StyD4I	CCNGG	1 cut(s)	259
StyI	CCWWGG	1 cut(s)	834
TaaI	ACNGT	1 cut(s)	868
TaiI	ACGT	1 cut(s)	228
TaqI	TCGA	2 cut(s)	13, 762
TasI	AATT	8 cut(s)	93, 353, 407, 429, 695, 732, 747, 883
TatI	WGTACW	1 cut(s)	713
TauI	GCSGC	4 cut(s)	184, 187, 190, 299
TfiI	GAWTC	3 cut(s)	15, 536, 764
Tru1I	TTAA	1 cut(s)	389
Tru9I	TTAA	1 cut(s)	389
TscAI	CASTG	2 cut(s)	641, 685
TseI	GCWGC	6 cut(s)	46, 140, 143, 175, 178, 423
TspDTI	ATGAA	3 cut(s)	16, 422, 710
TspGWI	ACGGA	1 cut(s)	176
TspRI	CASTG	2 cut(s)	641, 685
VpaK11BI	GGWCC	2 cut(s)	276, 629
XapI	RAATTY	3 cut(s)	429, 695, 883
XspI	CTAG	2 cut(s)	320, 521
ZrmI	AGTACT	1 cut(s)	715

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.