Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Beta-prop_KIB1-4 | PF03478 | 104 - 301 | 1.9e-11 | KIB1-4 beta-propeller |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 941 |
| AciI | CCGC | 4 cut(s) | 150, 521, 885, 1135 |
| AclWI | GGATC | 2 cut(s) | 269, 282 |
| AcoI | YGGCCR | 1 cut(s) | 470 |
| AcsI | RAATTY | 1 cut(s) | 819 |
| AcuI | CTGAAG | 1 cut(s) | 32 |
| AcvI | CACGTG | 1 cut(s) | 1228 |
| AdeI | CACNNNGTG | 1 cut(s) | 921 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 468, 993, 1228 |
| AflIII | ACRYGT | 1 cut(s) | 1225 |
| AgsI | TTSAA | 2 cut(s) | 862, 1265 |
| AjnI | CCWGG | 1 cut(s) | 720 |
| AluBI | AGCT | 7 cut(s) | 110, 296, 356, 796, 865, 991, 1031 |
| AluI | AGCT | 7 cut(s) | 110, 296, 356, 796, 865, 991, 1031 |
| Alw21I | GWGCWC | 2 cut(s) | 255, 892 |
| Alw26I | GTCTC | 3 cut(s) | 170, 227, 1103 |
| AlwI | GGATC | 2 cut(s) | 269, 282 |
| Ama87I | CYCGRG | 1 cut(s) | 435 |
| AoxI | GGCC | 4 cut(s) | 432, 470, 690, 760 |
| ApaI | GGGCCC | 1 cut(s) | 436 |
| ApeKI | GCWGC | 2 cut(s) | 356, 480 |
| ApoI | RAATTY | 1 cut(s) | 819 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1180 |
| AspS9I | GGNCC | 6 cut(s) | 432, 433, 558, 690, 724, 761 |
| AsuHPI | GGTGA | 1 cut(s) | 510 |
| AvaI | CYCGRG | 1 cut(s) | 435 |
| AvaII | GGWCC | 2 cut(s) | 558, 724 |
| BaeGI | GKGCMC | 1 cut(s) | 436 |
| BamHI | GGATCC | 1 cut(s) | 274 |
| BanII | GRGCYC | 3 cut(s) | 436, 585, 1001 |
| BbrPI | CACGTG | 1 cut(s) | 1228 |
| Bbv12I | GWGCWC | 2 cut(s) | 255, 892 |
| BbvI | GCAGC | 2 cut(s) | 343, 492 |
| BccI | CCATC | 5 cut(s) | 457, 605, 735, 741, 747 |
| BceAI | ACGGC | 3 cut(s) | 110, 898, 979 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 940, 974 |
| BciT130I | CCWGG | 1 cut(s) | 722 |
| BcoDI | GTCTC | 3 cut(s) | 170, 227, 1103 |
| BfaI | CTAG | 4 cut(s) | 770, 1016, 1037, 1270 |
| BisI | GCNGC | 3 cut(s) | 150, 357, 481 |
| BlsI | GCNGC | 3 cut(s) | 151, 358, 482 |
| Bme1390I | CCNGG | 1 cut(s) | 722 |
| Bme18I | GGWCC | 2 cut(s) | 558, 724 |
| BmeT110I | CYCGRG | 1 cut(s) | 435 |
| BmgT120I | GGNCC | 6 cut(s) | 432, 433, 558, 690, 724, 761 |
| BmiI | GGNNCC | 3 cut(s) | 276, 434, 584 |
| BmrFI | CCNGG | 1 cut(s) | 722 |
| BmrI | ACTGGG | 1 cut(s) | 708 |
| BmsI | GCATC | 1 cut(s) | 794 |
| BmuI | ACTGGG | 1 cut(s) | 708 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 429, 461 |
| BpmI | CTGGAG | 1 cut(s) | 887 |
| Bpu10I | CCTNAGC | 1 cut(s) | 992 |
| Bsa29I | ATCGAT | 1 cut(s) | 678 |
| BsaAI | YACGTR | 1 cut(s) | 1228 |
| BsaJI | CCNNGG | 4 cut(s) | 203, 264, 278, 789 |
| BsaWI | WCCGGW | 1 cut(s) | 1194 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 32, 35, 62, 65, 169, 199 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 468, 993, 1228 |
| Bse118I | RCCGGY | 1 cut(s) | 468 |
| Bse1I | ACTGG | 2 cut(s) | 422, 714 |
| Bse3DI | GCAATG | 1 cut(s) | 958 |
| BseBI | CCWGG | 1 cut(s) | 722 |
| BseCI | ATCGAT | 1 cut(s) | 678 |
| BseDI | CCNNGG | 4 cut(s) | 203, 264, 278, 789 |
| BseGI | GGATG | 5 cut(s) | 660, 746, 752, 758, 785 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 468, 993, 1228 |
| BseMI | GCAATG | 1 cut(s) | 958 |
| BseMII | CTCAG | 1 cut(s) | 1006 |
| BseNI | ACTGG | 2 cut(s) | 422, 714 |
| BseRI | GAGGAG | 6 cut(s) | 47, 50, 53, 56, 183, 914 |
| BseSI | GKGCMC | 1 cut(s) | 436 |
| BseX3I | CGGCCG | 1 cut(s) | 470 |
| BseXI | GCAGC | 2 cut(s) | 343, 492 |
| BsgI | GTGCAG | 1 cut(s) | 654 |
| Bsh1285I | CGRYCG | 1 cut(s) | 473 |
| BshFI | GGCC | 4 cut(s) | 434, 472, 692, 762 |
| BshVI | ATCGAT | 1 cut(s) | 678 |
| BsiEI | CGRYCG | 1 cut(s) | 473 |
| BsiHKAI | GWGCWC | 2 cut(s) | 255, 892 |
| BsiHKCI | CYCGRG | 1 cut(s) | 435 |
| BsiSI | CCGG | 3 cut(s) | 469, 473, 1195 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 468, 993, 1228 |
| BsmAI | GTCTC | 3 cut(s) | 170, 227, 1103 |
| BsnI | GGCC | 4 cut(s) | 434, 472, 692, 762 |
| BsoBI | CYCGRG | 1 cut(s) | 435 |
| Bsp120I | GGGCCC | 1 cut(s) | 432 |
| Bsp1286I | GDGCHC | 5 cut(s) | 255, 436, 585, 892, 1001 |
| Bsp143I | GATC | 5 cut(s) | 274, 290, 570, 1012, 1155 |
| Bsp19I | CCATGG | 1 cut(s) | 203 |
| BspACI | CCGC | 4 cut(s) | 150, 521, 885, 1135 |
| BspANI | GGCC | 4 cut(s) | 434, 472, 692, 762 |
| BspCNI | CTCAG | 1 cut(s) | 1005 |
| BspDI | ATCGAT | 1 cut(s) | 678 |
| BspLI | GGNNCC | 3 cut(s) | 276, 434, 584 |
| BspPI | GGATC | 2 cut(s) | 269, 282 |
| BsrDI | GCAATG | 1 cut(s) | 958 |
| BsrFI | RCCGGY | 1 cut(s) | 468 |
| BsrI | ACTGG | 2 cut(s) | 422, 714 |
| BssAI | RCCGGY | 1 cut(s) | 468 |
| BssECI | CCNNGG | 4 cut(s) | 203, 264, 278, 789 |
| BssMI | GATC | 5 cut(s) | 274, 290, 570, 1012, 1155 |
| BssT1I | CCWWGG | 3 cut(s) | 203, 264, 789 |
| Bst2UI | CCWGG | 1 cut(s) | 722 |
| Bst4CI | ACNGT | 6 cut(s) | 282, 562, 637, 894, 1150, 1180 |
| Bst6I | CTCTTC | 2 cut(s) | 232, 497 |
| BstBAI | YACGTR | 1 cut(s) | 1228 |
| BstC8I | GCNNGC | 2 cut(s) | 147, 470 |
| BstDEI | CTNAG | 3 cut(s) | 360, 992, 1249 |
| BstDSI | CCRYGG | 2 cut(s) | 203, 278 |
| BstF5I | GGATG | 5 cut(s) | 660, 746, 752, 758, 785 |
| BstKTI | GATC | 5 cut(s) | 277, 293, 573, 1015, 1158 |
| BstMAI | GTCTC | 3 cut(s) | 170, 227, 1103 |
| BstMBI | GATC | 5 cut(s) | 274, 290, 570, 1012, 1155 |
| BstMCI | CGRYCG | 1 cut(s) | 473 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 132, 988, 1037 |
| BstNI | CCWGG | 1 cut(s) | 722 |
| BstNSI | RCATGY | 1 cut(s) | 1212 |
| BstSCI | CCNGG | 1 cut(s) | 720 |
| BstSLI | GKGCMC | 1 cut(s) | 436 |
| BstV1I | GCAGC | 2 cut(s) | 343, 492 |
| BstX2I | RGATCY | 1 cut(s) | 274 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 429, 721 |
| BstYI | RGATCY | 1 cut(s) | 274 |
| BstZI | CGGCCG | 1 cut(s) | 470 |
| Bsu15I | ATCGAT | 1 cut(s) | 678 |
| BsuRI | GGCC | 4 cut(s) | 434, 472, 692, 762 |
| BsuTUI | ATCGAT | 1 cut(s) | 678 |
| BtgI | CCRYGG | 2 cut(s) | 203, 278 |
| BtsCI | GGATG | 5 cut(s) | 660, 746, 752, 758, 785 |
| BtsIMutI | CAGTG | 2 cut(s) | 721, 1155 |
| Cac8I | GCNNGC | 2 cut(s) | 147, 470 |
| Cfr10I | RCCGGY | 1 cut(s) | 468 |
| Cfr13I | GGNCC | 6 cut(s) | 432, 433, 558, 690, 724, 761 |
| ClaI | ATCGAT | 1 cut(s) | 678 |
| CseI | GACGC | 1 cut(s) | 1039 |
| CsiI | ACCWGGT | 1 cut(s) | 720 |
| CviAII | CATG | 7 cut(s) | 204, 442, 555, 947, 1186, 1209, 1240 |
| DdeI | CTNAG | 3 cut(s) | 360, 992, 1249 |
| DpnI | GATC | 5 cut(s) | 276, 292, 572, 1014, 1157 |
| DpnII | GATC | 5 cut(s) | 274, 290, 570, 1012, 1155 |
| DraIII | CACNNNGTG | 1 cut(s) | 921 |
| EaeI | YGGCCR | 1 cut(s) | 470 |
| EagI | CGGCCG | 1 cut(s) | 470 |
| Eam1104I | CTCTTC | 2 cut(s) | 232, 497 |
| EarI | CTCTTC | 2 cut(s) | 232, 497 |
| EciI | GGCGGA | 2 cut(s) | 900, 1150 |
| EclXI | CGGCCG | 1 cut(s) | 470 |
| Eco130I | CCWWGG | 3 cut(s) | 203, 264, 789 |
| Eco24I | GRGCYC | 3 cut(s) | 436, 585, 1001 |
| Eco32I | GATATC | 1 cut(s) | 73 |
| Eco47I | GGWCC | 2 cut(s) | 558, 724 |
| Eco52I | CGGCCG | 1 cut(s) | 470 |
| Eco57I | CTGAAG | 1 cut(s) | 32 |
| Eco72I | CACGTG | 1 cut(s) | 1228 |
| Eco88I | CYCGRG | 1 cut(s) | 435 |
| EcoO109I | RGGNCCY | 1 cut(s) | 761 |
| EcoRII | CCWGG | 1 cut(s) | 720 |
| EcoRV | GATATC | 1 cut(s) | 73 |
| EcoT14I | CCWWGG | 3 cut(s) | 203, 264, 789 |
| EcoT38I | GRGCYC | 3 cut(s) | 436, 585, 1001 |
| ErhI | CCWWGG | 3 cut(s) | 203, 264, 789 |
| FaeI | CATG | 7 cut(s) | 207, 445, 558, 950, 1189, 1212, 1243 |
| FatI | CATG | 7 cut(s) | 203, 441, 554, 946, 1185, 1208, 1239 |
| Fnu4HI | GCNGC | 3 cut(s) | 150, 357, 481 |
| FokI | GGATG | 5 cut(s) | 647, 753, 759, 765, 772 |
| FriOI | GRGCYC | 3 cut(s) | 436, 585, 1001 |
| Fsp4HI | GCNGC | 3 cut(s) | 150, 357, 481 |
| FspBI | CTAG | 4 cut(s) | 770, 1016, 1037, 1270 |
| GluI | GCNGC | 3 cut(s) | 150, 357, 481 |
| GsuI | CTGGAG | 1 cut(s) | 887 |
| HaeIII | GGCC | 4 cut(s) | 434, 472, 692, 762 |
| HapII | CCGG | 3 cut(s) | 469, 473, 1195 |
| HgaI | GACGC | 1 cut(s) | 1039 |
| Hin1II | CATG | 7 cut(s) | 207, 445, 558, 950, 1189, 1212, 1243 |
| HincII | GTYRAC | 1 cut(s) | 1146 |
| HindII | GTYRAC | 1 cut(s) | 1146 |
| HindIII | AAGCTT | 1 cut(s) | 1029 |
| HinfI | GANTC | 3 cut(s) | 364, 438, 779 |
| HpaII | CCGG | 3 cut(s) | 469, 473, 1195 |
| HphI | GGTGA | 1 cut(s) | 510 |
| Hpy166II | GTNNAC | 1 cut(s) | 1146 |
| Hpy188I | TCNGA | 7 cut(s) | 12, 290, 575, 830, 854, 934, 1160 |
| Hpy188III | TCNNGA | 2 cut(s) | 65, 1016 |
| Hpy8I | GTNNAC | 1 cut(s) | 1146 |
| Hpy99I | CGWCG | 1 cut(s) | 965 |
| HpyAV | CCTTC | 1 cut(s) | 22 |
| HpyCH4III | ACNGT | 6 cut(s) | 282, 562, 637, 894, 1150, 1180 |
| HpyCH4IV | ACGT | 1 cut(s) | 1227 |
| HpyCH4V | TGCA | 6 cut(s) | 79, 102, 214, 671, 785, 1208 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 132, 988, 1037 |
| HpyF3I | CTNAG | 3 cut(s) | 360, 992, 1249 |
| HpySE526I | ACGT | 1 cut(s) | 1227 |
| Hsp92II | CATG | 7 cut(s) | 207, 445, 558, 950, 1189, 1212, 1243 |
| KroI | GCCGGC | 1 cut(s) | 468 |
| KroNI | GCCGGC | 1 cut(s) | 470 |
| Kzo9I | GATC | 5 cut(s) | 274, 290, 570, 1012, 1155 |
| LmnI | GCTCC | 5 cut(s) | 196, 450, 588, 793, 887 |
| Lsp1109I | GCAGC | 2 cut(s) | 343, 492 |
| LweI | GCATC | 1 cut(s) | 794 |
| MabI | ACCWGGT | 1 cut(s) | 720 |
| MaeI | CTAG | 4 cut(s) | 770, 1016, 1037, 1270 |
| MaeII | ACGT | 1 cut(s) | 1227 |
| MaeIII | GTNAC | 4 cut(s) | 268, 716, 872, 913 |
| MalI | GATC | 5 cut(s) | 276, 292, 572, 1014, 1157 |
| MboI | GATC | 5 cut(s) | 274, 290, 570, 1012, 1155 |
| MfeI | CAATTG | 2 cut(s) | 80, 333 |
| MflI | RGATCY | 1 cut(s) | 274 |
| MhlI | GDGCHC | 5 cut(s) | 255, 436, 585, 892, 1001 |
| MluCI | AATT | 8 cut(s) | 80, 139, 197, 333, 617, 734, 819, 975 |
| MlyI | GAGTC | 1 cut(s) | 447 |
| MroNI | GCCGGC | 1 cut(s) | 468 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1180 |
| MseI | TTAA | 5 cut(s) | 416, 498, 969, 974, 1244 |
| MslI | CAYNNNNRTG | 2 cut(s) | 678, 951 |
| MspA1I | CMGCKG | 1 cut(s) | 152 |
| MspI | CCGG | 3 cut(s) | 469, 473, 1195 |
| MspR9I | CCNGG | 1 cut(s) | 722 |
| MunI | CAATTG | 2 cut(s) | 80, 333 |
| MvaI | CCWGG | 1 cut(s) | 722 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 132, 988, 1037 |
| NaeI | GCCGGC | 1 cut(s) | 470 |
| NcoI | CCATGG | 1 cut(s) | 203 |
| NdeII | GATC | 5 cut(s) | 274, 290, 570, 1012, 1155 |
| NgoMIV | GCCGGC | 1 cut(s) | 468 |
| NlaIII | CATG | 7 cut(s) | 207, 445, 558, 950, 1189, 1212, 1243 |
| NlaIV | GGNNCC | 3 cut(s) | 276, 434, 584 |
| NmuCI | GTSAC | 3 cut(s) | 716, 872, 913 |
| NspI | RCATGY | 1 cut(s) | 1212 |
| PdiI | GCCGGC | 1 cut(s) | 470 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1180 |
| PfeI | GAWTC | 2 cut(s) | 364, 779 |
| PflFI | GACNNNGTC | 3 cut(s) | 722, 1049, 1141 |
| PkrI | GCNGC | 3 cut(s) | 151, 358, 482 |
| PleI | GAGTC | 1 cut(s) | 446 |
| PmaCI | CACGTG | 1 cut(s) | 1228 |
| PmlI | CACGTG | 1 cut(s) | 1228 |
| PpsI | GAGTC | 1 cut(s) | 446 |
| Ppu21I | YACGTR | 1 cut(s) | 1228 |
| PsiI | TTATAA | 1 cut(s) | 941 |
| Psp6I | CCWGG | 1 cut(s) | 720 |
| PspCI | CACGTG | 1 cut(s) | 1228 |
| PspGI | CCWGG | 1 cut(s) | 720 |
| PspN4I | GGNNCC | 3 cut(s) | 276, 434, 584 |
| PspOMI | GGGCCC | 1 cut(s) | 432 |
| PspPI | GGNCC | 6 cut(s) | 432, 433, 558, 690, 724, 761 |
| PsuI | RGATCY | 1 cut(s) | 274 |
| PsyI | GACNNNGTC | 3 cut(s) | 722, 1049, 1141 |
| RseI | CAYNNNNRTG | 2 cut(s) | 678, 951 |
| SaqAI | TTAA | 5 cut(s) | 416, 498, 969, 974, 1244 |
| SatI | GCNGC | 3 cut(s) | 150, 357, 481 |
| Sau3AI | GATC | 5 cut(s) | 274, 290, 570, 1012, 1155 |
| Sau96I | GGNCC | 6 cut(s) | 432, 433, 558, 690, 724, 761 |
| SchI | GAGTC | 1 cut(s) | 447 |
| ScrFI | CCNGG | 1 cut(s) | 722 |
| SduI | GDGCHC | 5 cut(s) | 255, 436, 585, 892, 1001 |
| SexAI | ACCWGGT | 1 cut(s) | 720 |
| SfaNI | GCATC | 1 cut(s) | 794 |
| SinI | GGWCC | 2 cut(s) | 558, 724 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 678, 951 |
| Sse9I | AATT | 8 cut(s) | 80, 139, 197, 333, 617, 734, 819, 975 |
| SsiI | CCGC | 4 cut(s) | 150, 521, 885, 1135 |
| SspI | AATATT | 2 cut(s) | 260, 371 |
| SspMI | CTAG | 4 cut(s) | 770, 1016, 1037, 1270 |
| StyD4I | CCNGG | 1 cut(s) | 720 |
| StyI | CCWWGG | 3 cut(s) | 203, 264, 789 |
| TaaI | ACNGT | 6 cut(s) | 282, 562, 637, 894, 1150, 1180 |
| TaiI | ACGT | 1 cut(s) | 1230 |
| TaqI | TCGA | 6 cut(s) | 53, 249, 308, 678, 960, 1171 |
| TasI | AATT | 8 cut(s) | 80, 139, 197, 333, 617, 734, 819, 975 |
| TauI | GCSGC | 1 cut(s) | 152 |
| TfiI | GAWTC | 2 cut(s) | 364, 779 |
| Tru1I | TTAA | 5 cut(s) | 416, 498, 969, 974, 1244 |
| Tru9I | TTAA | 5 cut(s) | 416, 498, 969, 974, 1244 |
| TscAI | CASTG | 2 cut(s) | 721, 1155 |
| TseFI | GTSAC | 3 cut(s) | 716, 872, 913 |
| TseI | GCWGC | 2 cut(s) | 356, 480 |
| Tsp45I | GTSAC | 3 cut(s) | 716, 872, 913 |
| TspDTI | ATGAA | 2 cut(s) | 657, 813 |
| TspGWI | ACGGA | 2 cut(s) | 287, 998 |
| TspRI | CASTG | 2 cut(s) | 721, 1155 |
| Tth111I | GACNNNGTC | 3 cut(s) | 722, 1049, 1141 |
| VpaK11BI | GGWCC | 2 cut(s) | 558, 724 |
| XapI | RAATTY | 1 cut(s) | 819 |
| XbaI | TCTAGA | 1 cut(s) | 1015 |
| XceI | RCATGY | 1 cut(s) | 1212 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1180 |
| XspI | CTAG | 4 cut(s) | 770, 1016, 1037, 1270 |