Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Beta-prop_KIB1-4 | PF03478 | 14 - 352 | 1.6e-31 | KIB1-4 beta-propeller |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 377 |
| AciI | CCGC | 1 cut(s) | 1039 |
| AclWI | GGATC | 1 cut(s) | 768 |
| AcsI | RAATTY | 2 cut(s) | 65, 700 |
| AcyI | GRCGYC | 1 cut(s) | 163 |
| AfaI | GTAC | 3 cut(s) | 220, 357, 739 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 257, 1034 |
| AflIII | ACRYGT | 1 cut(s) | 627 |
| AgsI | TTSAA | 6 cut(s) | 247, 662, 672, 818, 835, 980 |
| AjnI | CCWGG | 4 cut(s) | 185, 319, 366, 574 |
| AluBI | AGCT | 3 cut(s) | 83, 344, 461 |
| AluI | AGCT | 3 cut(s) | 83, 344, 461 |
| Alw26I | GTCTC | 1 cut(s) | 965 |
| AlwI | GGATC | 1 cut(s) | 768 |
| Ama87I | CYCGRG | 1 cut(s) | 1094 |
| AoxI | GGCC | 2 cut(s) | 419, 568 |
| ApeKI | GCWGC | 3 cut(s) | 309, 344, 512 |
| ApoI | RAATTY | 2 cut(s) | 65, 700 |
| AseI | ATTAAT | 1 cut(s) | 852 |
| AspS9I | GGNCC | 4 cut(s) | 317, 420, 569, 857 |
| AsuHPI | GGTGA | 1 cut(s) | 899 |
| AvaI | CYCGRG | 1 cut(s) | 1094 |
| AvaII | GGWCC | 2 cut(s) | 317, 857 |
| BanII | GRGCYC | 1 cut(s) | 612 |
| BbvI | GCAGC | 3 cut(s) | 321, 331, 499 |
| BccI | CCATC | 6 cut(s) | 32, 122, 286, 647, 832, 1036 |
| BciT130I | CCWGG | 4 cut(s) | 187, 321, 368, 576 |
| BclI | TGATCA | 2 cut(s) | 138, 448 |
| BcoDI | GTCTC | 1 cut(s) | 965 |
| BfaI | CTAG | 2 cut(s) | 462, 692 |
| BfmI | CTRYAG | 3 cut(s) | 307, 580, 733 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 576 |
| BisI | GCNGC | 3 cut(s) | 310, 345, 513 |
| BlsI | GCNGC | 3 cut(s) | 311, 346, 514 |
| BmcAI | AGTACT | 2 cut(s) | 220, 739 |
| Bme1390I | CCNGG | 4 cut(s) | 187, 321, 368, 576 |
| Bme18I | GGWCC | 2 cut(s) | 317, 857 |
| BmeT110I | CYCGRG | 1 cut(s) | 1094 |
| BmgT120I | GGNCC | 4 cut(s) | 317, 420, 569, 857 |
| BmrFI | CCNGG | 4 cut(s) | 187, 321, 368, 576 |
| BmrI | ACTGGG | 1 cut(s) | 606 |
| BmsI | GCATC | 2 cut(s) | 536, 1083 |
| BmuI | ACTGGG | 1 cut(s) | 606 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 258, 290 |
| BpmI | CTGGAG | 1 cut(s) | 773 |
| BpuEI | CTTGAG | 1 cut(s) | 626 |
| BsaHI | GRCGYC | 1 cut(s) | 163 |
| BsaI | GGTCTC | 1 cut(s) | 965 |
| BsaJI | CCNNGG | 5 cut(s) | 185, 770, 883, 1095, 1151 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 257, 1034 |
| Bse1I | ACTGG | 3 cut(s) | 216, 612, 617 |
| Bse3DI | GCAATG | 3 cut(s) | 319, 571, 1022 |
| BseBI | CCWGG | 4 cut(s) | 187, 321, 368, 576 |
| BseDI | CCNNGG | 5 cut(s) | 185, 770, 883, 1095, 1151 |
| BseGI | GGATG | 2 cut(s) | 13, 527 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 257, 1034 |
| BseMI | GCAATG | 3 cut(s) | 319, 571, 1022 |
| BseMII | CTCAG | 2 cut(s) | 159, 875 |
| BseNI | ACTGG | 3 cut(s) | 216, 612, 617 |
| BseRI | GAGGAG | 2 cut(s) | 728, 770 |
| BseXI | GCAGC | 3 cut(s) | 321, 331, 499 |
| BshFI | GGCC | 2 cut(s) | 421, 570 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1094 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 257, 1034 |
| BsmAI | GTCTC | 1 cut(s) | 965 |
| BsnI | GGCC | 2 cut(s) | 421, 570 |
| Bso31I | GGTCTC | 1 cut(s) | 965 |
| BsoBI | CYCGRG | 1 cut(s) | 1094 |
| Bsp1286I | GDGCHC | 1 cut(s) | 612 |
| Bsp143I | GATC | 5 cut(s) | 138, 448, 760, 780, 927 |
| BspACI | CCGC | 1 cut(s) | 1039 |
| BspANI | GGCC | 2 cut(s) | 421, 570 |
| BspCNI | CTCAG | 2 cut(s) | 160, 874 |
| BspMAI | CTGCAG | 2 cut(s) | 311, 737 |
| BspPI | GGATC | 1 cut(s) | 768 |
| BspTNI | GGTCTC | 1 cut(s) | 965 |
| BsrDI | GCAATG | 3 cut(s) | 319, 571, 1022 |
| BsrI | ACTGG | 3 cut(s) | 216, 612, 617 |
| BssECI | CCNNGG | 5 cut(s) | 185, 770, 883, 1095, 1151 |
| BssMI | GATC | 5 cut(s) | 138, 448, 760, 780, 927 |
| BssNI | GRCGYC | 1 cut(s) | 163 |
| BssT1I | CCWWGG | 2 cut(s) | 770, 1151 |
| Bst2UI | CCWGG | 4 cut(s) | 187, 321, 368, 576 |
| Bst4CI | ACNGT | 2 cut(s) | 374, 989 |
| Bst6I | CTCTTC | 1 cut(s) | 95 |
| BstACI | GRCGYC | 1 cut(s) | 163 |
| BstDEI | CTNAG | 3 cut(s) | 44, 168, 861 |
| BstEII | GGTNACC | 1 cut(s) | 887 |
| BstF5I | GGATG | 2 cut(s) | 13, 527 |
| BstKTI | GATC | 5 cut(s) | 141, 451, 763, 783, 930 |
| BstMAI | GTCTC | 1 cut(s) | 965 |
| BstMBI | GATC | 5 cut(s) | 138, 448, 760, 780, 927 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 576 |
| BstNI | CCWGG | 4 cut(s) | 187, 321, 368, 576 |
| BstNSI | RCATGY | 2 cut(s) | 631, 779 |
| BstPI | GGTNACC | 1 cut(s) | 887 |
| BstSCI | CCNGG | 4 cut(s) | 185, 319, 366, 574 |
| BstSFI | CTRYAG | 3 cut(s) | 307, 580, 733 |
| BstV1I | GCAGC | 3 cut(s) | 321, 331, 499 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1152 |
| BsuRI | GGCC | 2 cut(s) | 421, 570 |
| BtsCI | GGATG | 2 cut(s) | 13, 527 |
| BtsI | GCAGTG | 1 cut(s) | 304 |
| BtsIMutI | CAGTG | 2 cut(s) | 304, 869 |
| Cfr13I | GGNCC | 4 cut(s) | 317, 420, 569, 857 |
| CseI | GACGC | 1 cut(s) | 152 |
| Csp6I | GTAC | 3 cut(s) | 219, 356, 738 |
| CviAII | CATG | 6 cut(s) | 142, 300, 435, 601, 628, 776 |
| CviQI | GTAC | 3 cut(s) | 219, 356, 738 |
| DdeI | CTNAG | 3 cut(s) | 44, 168, 861 |
| DpnI | GATC | 5 cut(s) | 140, 450, 762, 782, 929 |
| DpnII | GATC | 5 cut(s) | 138, 448, 760, 780, 927 |
| DraI | TTTAAA | 1 cut(s) | 336 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 377 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 377 |
| Eam1104I | CTCTTC | 1 cut(s) | 95 |
| EarI | CTCTTC | 1 cut(s) | 95 |
| EciI | GGCGGA | 1 cut(s) | 1054 |
| Eco130I | CCWWGG | 2 cut(s) | 770, 1151 |
| Eco24I | GRGCYC | 1 cut(s) | 612 |
| Eco31I | GGTCTC | 1 cut(s) | 965 |
| Eco47I | GGWCC | 2 cut(s) | 317, 857 |
| Eco88I | CYCGRG | 1 cut(s) | 1094 |
| Eco91I | GGTNACC | 1 cut(s) | 887 |
| EcoO65I | GGTNACC | 1 cut(s) | 887 |
| EcoRII | CCWGG | 4 cut(s) | 185, 319, 366, 574 |
| EcoT14I | CCWWGG | 2 cut(s) | 770, 1151 |
| EcoT38I | GRGCYC | 1 cut(s) | 612 |
| ErhI | CCWWGG | 2 cut(s) | 770, 1151 |
| FaeI | CATG | 6 cut(s) | 145, 303, 438, 604, 631, 779 |
| FatI | CATG | 6 cut(s) | 141, 299, 434, 600, 627, 775 |
| FbaI | TGATCA | 2 cut(s) | 138, 448 |
| Fnu4HI | GCNGC | 3 cut(s) | 310, 345, 513 |
| FokI | GGATG | 1 cut(s) | 514 |
| FriOI | GRGCYC | 1 cut(s) | 612 |
| Fsp4HI | GCNGC | 3 cut(s) | 310, 345, 513 |
| FspBI | CTAG | 2 cut(s) | 462, 692 |
| GluI | GCNGC | 3 cut(s) | 310, 345, 513 |
| GsuI | CTGGAG | 1 cut(s) | 773 |
| HaeIII | GGCC | 2 cut(s) | 421, 570 |
| HgaI | GACGC | 1 cut(s) | 152 |
| Hin1I | GRCGYC | 1 cut(s) | 163 |
| Hin1II | CATG | 6 cut(s) | 145, 303, 438, 604, 631, 779 |
| HinfI | GANTC | 4 cut(s) | 247, 439, 662, 814 |
| HphI | GGTGA | 1 cut(s) | 899 |
| Hpy166II | GTNNAC | 2 cut(s) | 271, 1140 |
| Hpy188I | TCNGA | 1 cut(s) | 712 |
| Hpy188III | TCNNGA | 5 cut(s) | 167, 752, 835, 878, 1125 |
| Hpy8I | GTNNAC | 2 cut(s) | 271, 1140 |
| HpyAV | CCTTC | 5 cut(s) | 28, 305, 812, 1027, 1099 |
| HpyCH4III | ACNGT | 2 cut(s) | 374, 989 |
| HpyCH4V | TGCA | 6 cut(s) | 75, 309, 330, 393, 515, 735 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 576 |
| HpyF3I | CTNAG | 3 cut(s) | 44, 168, 861 |
| Hsp92I | GRCGYC | 1 cut(s) | 163 |
| Hsp92II | CATG | 6 cut(s) | 145, 303, 438, 604, 631, 779 |
| Ksp22I | TGATCA | 2 cut(s) | 138, 448 |
| Kzo9I | GATC | 5 cut(s) | 138, 448, 760, 780, 927 |
| LmnI | GCTCC | 2 cut(s) | 88, 1071 |
| Lsp1109I | GCAGC | 3 cut(s) | 321, 331, 499 |
| LweI | GCATC | 2 cut(s) | 536, 1083 |
| MaeI | CTAG | 2 cut(s) | 462, 692 |
| MaeIII | GTNAC | 3 cut(s) | 302, 887, 917 |
| MalI | GATC | 5 cut(s) | 140, 450, 762, 782, 929 |
| MboI | GATC | 5 cut(s) | 138, 448, 760, 780, 927 |
| MboII | GAAGA | 3 cut(s) | 112, 229, 859 |
| MfeI | CAATTG | 1 cut(s) | 123 |
| MhlI | GDGCHC | 1 cut(s) | 612 |
| MluCI | AATT | 8 cut(s) | 34, 65, 123, 430, 492, 700, 940, 1115 |
| MlyI | GAGTC | 1 cut(s) | 433 |
| MseI | TTAA | 6 cut(s) | 335, 539, 636, 852, 948, 1019 |
| MspR9I | CCNGG | 4 cut(s) | 187, 321, 368, 576 |
| MunI | CAATTG | 1 cut(s) | 123 |
| MvaI | CCWGG | 4 cut(s) | 187, 321, 368, 576 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 576 |
| NdeII | GATC | 5 cut(s) | 138, 448, 760, 780, 927 |
| NlaIII | CATG | 6 cut(s) | 145, 303, 438, 604, 631, 779 |
| NmuCI | GTSAC | 2 cut(s) | 302, 887 |
| NspI | RCATGY | 2 cut(s) | 631, 779 |
| PciI | ACATGT | 1 cut(s) | 627 |
| PfeI | GAWTC | 3 cut(s) | 247, 662, 814 |
| PkrI | GCNGC | 3 cut(s) | 311, 346, 514 |
| PleI | GAGTC | 1 cut(s) | 433 |
| PpsI | GAGTC | 1 cut(s) | 433 |
| PscI | ACATGT | 1 cut(s) | 627 |
| PshBI | ATTAAT | 1 cut(s) | 852 |
| Psp6I | CCWGG | 4 cut(s) | 185, 319, 366, 574 |
| PspEI | GGTNACC | 1 cut(s) | 887 |
| PspGI | CCWGG | 4 cut(s) | 185, 319, 366, 574 |
| PspPI | GGNCC | 4 cut(s) | 317, 420, 569, 857 |
| PstI | CTGCAG | 2 cut(s) | 311, 737 |
| RsaI | GTAC | 3 cut(s) | 220, 357, 739 |
| RsaNI | GTAC | 3 cut(s) | 219, 356, 738 |
| SaqAI | TTAA | 6 cut(s) | 335, 539, 636, 852, 948, 1019 |
| SatI | GCNGC | 3 cut(s) | 310, 345, 513 |
| Sau3AI | GATC | 5 cut(s) | 138, 448, 760, 780, 927 |
| Sau96I | GGNCC | 4 cut(s) | 317, 420, 569, 857 |
| ScaI | AGTACT | 2 cut(s) | 220, 739 |
| SchI | GAGTC | 1 cut(s) | 433 |
| ScrFI | CCNGG | 4 cut(s) | 187, 321, 368, 576 |
| SduI | GDGCHC | 1 cut(s) | 612 |
| SfaNI | GCATC | 2 cut(s) | 536, 1083 |
| SfcI | CTRYAG | 3 cut(s) | 307, 580, 733 |
| SinI | GGWCC | 2 cut(s) | 317, 857 |
| SmlI | CTYRAG | 1 cut(s) | 605 |
| SmoI | CTYRAG | 1 cut(s) | 605 |
| Sse9I | AATT | 8 cut(s) | 34, 65, 123, 430, 492, 700, 940, 1115 |
| SsiI | CCGC | 1 cut(s) | 1039 |
| SspI | AATATT | 1 cut(s) | 640 |
| SspMI | CTAG | 2 cut(s) | 462, 692 |
| StyD4I | CCNGG | 4 cut(s) | 185, 319, 366, 574 |
| StyI | CCWWGG | 2 cut(s) | 770, 1151 |
| TaaI | ACNGT | 2 cut(s) | 374, 989 |
| TaqI | TCGA | 4 cut(s) | 265, 826, 1031, 1126 |
| TasI | AATT | 8 cut(s) | 34, 65, 123, 430, 492, 700, 940, 1115 |
| TatI | WGTACW | 2 cut(s) | 218, 737 |
| TfiI | GAWTC | 3 cut(s) | 247, 662, 814 |
| Tru1I | TTAA | 6 cut(s) | 335, 539, 636, 852, 948, 1019 |
| Tru9I | TTAA | 6 cut(s) | 335, 539, 636, 852, 948, 1019 |
| TscAI | CASTG | 2 cut(s) | 311, 869 |
| TseFI | GTSAC | 2 cut(s) | 302, 887 |
| TseI | GCWGC | 3 cut(s) | 309, 344, 512 |
| Tsp45I | GTSAC | 2 cut(s) | 302, 887 |
| TspDTI | ATGAA | 4 cut(s) | 113, 194, 423, 1095 |
| TspGWI | ACGGA | 1 cut(s) | 536 |
| TspRI | CASTG | 2 cut(s) | 311, 869 |
| VpaK11BI | GGWCC | 2 cut(s) | 317, 857 |
| VspI | ATTAAT | 1 cut(s) | 852 |
| XapI | RAATTY | 2 cut(s) | 65, 700 |
| XceI | RCATGY | 2 cut(s) | 631, 779 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 538, 563 |
| XspI | CTAG | 2 cut(s) | 462, 692 |
| ZrmI | AGTACT | 2 cut(s) | 220, 739 |