Rw4G026370

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Forward (+)
52531139 .. 52532296
1158 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G026370.1

Sequence Viewer

Length: 1158 bp
ATGCTCTGTTCTCATCCCTTCTCCATCAAAGATAATTGCTTTCTAAGTCTAACTGATGACAAGAAATTTATTTGCAAGTCAGCTCCTACCTATAATATGAAGAGGGGGGATTGTGTTGGGTCAATTGATGGGTGGTTGATCATGGCTGATAGTGTTTTATGGCGTCCTGAGAGATTTATGAAACCCTGGTCATTTTACTTGTATAATCATCATACCAGTACTTTTAGTATCAACTTCTTCTTTTTGAATCCATTATCAGGTGTTCGAGTGAACCTCCCATCATCAAAATCCACCCTTCCATGTCACTGCAGCAATGGACCTGGCTTCTGCATTTTAAAAGTAGCTGCCTCATCAGTACCAACTTGCCAGGACTGTTATGTCGTTAGCCTTTGCAGAAGTGGTCATTTGGCTTTCAGTAGGCCCAATGATAATTCATGGACTCTCATTGATCAGGGGGAAGCTAGAGGGTTTATTTTTTGTGATATAGAAATAATTTATGGGAAAATATATGCTGCAACTACGGAGGCATCCAAGTTTTTAATGGTATTTGATGTCCATTATGGCAATGGCCCTCCTGGCTACAGGGCTGAAAGGTTGGTCATGCTTGAGCCCAGTCCAGTTCCTAACATGTTTCTTAATATTTGGAGAACAGATGGAGTTGAATCCCATTCAAACTGCGAACTCATTTCCCTAGCAAAAAATTCTCTATCAGAGGAGTTGTTTATGATATTCTGCAGTACTACCTTTATTCTGGAGGAGGATCAATCTCCTTGGCATGTGATCTTTGGTAGTGATTTTATCCTTCCACCACAGATTCAAGCATTTCGAGTGTTCAAGATGGAGTGGAAGATTAATGGTCCTCAGTGGATAGAGGTTCTTGACCTCGGTGACCAGATATTATTTGTGTCTGTGGGTGGTAACAAAATGATCTCTACCAGCAATTTCCTTAATCATAATGGTCTCAATGATAAAGCATTTCAAAGAAACTGTATCTATTTTGCTTACCATAGTTCTTGTTTAACATTGCCATCGAAGGGGCGGAGTTTTGGGGTGTTTTCTTTGACAAATAGGAGCATCAAATGTGCCACCTTCCCCGAGGAACATTCATTTACCCAATTATATTCTCGACCTGTCTGGTTTACACCAAATCCTTGGTAG

Protein Analysis

385

Amino Acids

43.76

Weight (kDa)

6.81

Isoelectric Point (pI)

45.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 14 - 352 1.6e-31 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000142)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13532 FvH4_2g28870 FvH4_3g30930 FvH4_3g37281 FvH4_3g37300 FvH4_3g37301 FvH4_3g37301 FvH4_4g23711 FvH4_5g02330 FvH4_6g16960 FvH4_6g16971 FvH4_6g21291 FvH4_6g21331 FvH4_6g22212 FvH4_6g22332 FvH4_6g36920 FvH4_6g37552 FvH4_6g37591 FvH4_6g39721 FvH4_6g46020 FvH4_6g47001 FvH4_6g47002 FvH4_6g47130 FvH4_6g47140 FvH4_6g47161 FvH4_6g47170 FvH4_6g47190 FvH4_6g49120 FvH4_6g49280 FvH4_6g49281 FvH4_6g49640 FvH4_6g49640
malus_domestica MD03G1085600.v1.1 MD09G1027500.v1.1 MD09G1050100.v1.1
prunus_persica Prupe.1G004300_v2.0.a1 Prupe.1G016300_v2.0.a1 Prupe.1G019300_v2.0.a1 Prupe.3G239100_v2.0.a1 Prupe.3G291200_v2.0.a1
pyrus_communis pycom08g02840 pycom08g02860 pycom08g02870
rosa_chinensis RchiOBHm_Chr2g0153831 RchiOBHm_Chr2g0166171 RchiOBHm_Chr2g0166201 RchiOBHm_Chr3g0476221 RchiOBHm_Chr4g0430971 RchiOBHm_Chr5g0067081 RchiOBHm_Chr7g0197821
rosa_laevigata RLG00000001284 RLG00000006996 RLG00000012710 RLG00000019299 RLG00000020285 RLG00000020444 RLG00000020466 RLG00000020591 RLG00000020665 RLG00000020730 RLG00000020732 RLG00000021449 RLG00000021592 RLG00000021593 RLG00000021594 RLG00000021596 RLG00000021597 RLG00000021801 RLG00000023534 RLG00000023538 RLG00000023693 RLG00000023694 RLG00000023699 RLG00000024196 RLG00000024214 RLG00000024220 RLG00000024244 RLG00000024608 RLG00000024612 RLG00000035157 RLG00000035906
rosa_multiflora Rmu_co8282815.1_g000001 Rmu_co8380495.1_g000001 Rmu_co8381111.1_g000001 Rmu_co8460513.1_g000001 Rmu_co8481947.1_g000001 Rmu_co8487937.1_g000001 Rmu_sc0000151.1_g000017 Rmu_sc0001427.1_g000003 Rmu_sc0001427.1_g000006 Rmu_sc0002611.1_g000008 Rmu_sc0003887.1_g000018 Rmu_sc0003887.1_g000019 Rmu_sc0003887.1_g000021 Rmu_sc0004119.1_g000004 Rmu_sc0004329.1_g000003 Rmu_sc0004485.1_g000024 Rmu_sc0005290.1_g000001 Rmu_sc0005609.1_g000006 Rmu_sc0006187.1_g000018 Rmu_sc0006218.1_g000032 Rmu_sc0006218.1_g000033 Rmu_sc0007150.1_g000003 Rmu_sc0007154.1_g000004 Rmu_sc0007154.1_g000005 Rmu_sc0007154.1_g000007 Rmu_sc0008314.1_g000012 Rmu_sc0010073.1_g000023 Rmu_sc0010073.1_g000025 Rmu_sc0011216.1_g000008 Rmu_sc0012445.1_g000005 Rmu_sc0013571.1_g000002 Rmu_sc0018648.1_g000002 Rmu_sc0020961.1_g000002 Rmu_sc0020961.1_g000003 Rmu_sc0023710.1_g000001 Rmu_sc0031310.1_g000008 Rmu_sc0033940.1_g000001 Rmu_sc0035493.1_g000001 Rmu_sc0039285.1_g000001
rosa_roxburghii Rroxscaffold_1G00014000 Rroxscaffold_1G00014020 Rroxscaffold_2G00082760 Rroxscaffold_2G00085090 Rroxscaffold_2G00085100 Rroxscaffold_2G00085140 Rroxscaffold_2G00086670 Rroxscaffold_2G00086680 Rroxscaffold_2G00098190 Rroxscaffold_2G00099270 Rroxscaffold_3G00227460 Rroxscaffold_3G00258190 Rroxscaffold_3G00259780 Rroxscaffold_6G00402940 Rroxscaffold_6G00410200 Rroxscaffold_6G00410210 Rroxscaffold_7G00184320
rosa_rugosa Rorug02G0416100 Rorug02G0416200 Rorug02G0520900 Rorug02G0521200 Rorug02G0521300 Rorug02G0534600 Rorug03G0116300 Rorug03G0162900 Rorug03G0162900 Rorug04G0241400 Rorug05G0380900 Rorug07G0043800
rosa_samantha Rh1AG115300 Rh2BG483700 Rh2BG509900 Rh2BG515700 Rh2BG515800 Rh2BG586500 Rh2BG586600 Rh2BG586700 Rh2BG598800 Rh2BG598900 Rh2BG599100 Rh2BG618400 Rh2BG630500 Rh2CG457400 Rh2CG484900 Rh3AG165300 Rh3AG212900 Rh3AG213300 Rh3BG145800 Rh3BG146100 Rh3BG235300 Rh3BG246500 Rh3BG247000 Rh3BG247100 Rh3CG240300 Rh3CG240800 Rh3CG240900 Rh3CG259600 Rh3DG147000 Rh3DG184800 Rh3DG184900 Rh3DG185000 Rh3DG239500 Rh3DG240100 Rh3DG240200 Rh3DG255800 Rh5BG458500 Rh5CG480400 Rh7BG170400 Rh7BG407900 Rh7CG176900
rosa_wichuraiana Rw2G038990 Rw2G041550 Rw2G047660 Rw2G048940 Rw4G026370 Rw6G008730 Rw7G014600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 377
AciI CCGC 1 cut(s) 1039
AclWI GGATC 1 cut(s) 768
AcsI RAATTY 2 cut(s) 65, 700
AcyI GRCGYC 1 cut(s) 163
AfaI GTAC 3 cut(s) 220, 357, 739
AfiI CCNNNNNNNGG 2 cut(s) 257, 1034
AflIII ACRYGT 1 cut(s) 627
AgsI TTSAA 6 cut(s) 247, 662, 672, 818, 835, 980
AjnI CCWGG 4 cut(s) 185, 319, 366, 574
AluBI AGCT 3 cut(s) 83, 344, 461
AluI AGCT 3 cut(s) 83, 344, 461
Alw26I GTCTC 1 cut(s) 965
AlwI GGATC 1 cut(s) 768
Ama87I CYCGRG 1 cut(s) 1094
AoxI GGCC 2 cut(s) 419, 568
ApeKI GCWGC 3 cut(s) 309, 344, 512
ApoI RAATTY 2 cut(s) 65, 700
AseI ATTAAT 1 cut(s) 852
AspS9I GGNCC 4 cut(s) 317, 420, 569, 857
AsuHPI GGTGA 1 cut(s) 899
AvaI CYCGRG 1 cut(s) 1094
AvaII GGWCC 2 cut(s) 317, 857
BanII GRGCYC 1 cut(s) 612
BbvI GCAGC 3 cut(s) 321, 331, 499
BccI CCATC 6 cut(s) 32, 122, 286, 647, 832, 1036
BciT130I CCWGG 4 cut(s) 187, 321, 368, 576
BclI TGATCA 2 cut(s) 138, 448
BcoDI GTCTC 1 cut(s) 965
BfaI CTAG 2 cut(s) 462, 692
BfmI CTRYAG 3 cut(s) 307, 580, 733
BglI GCCNNNNNGGC 1 cut(s) 576
BisI GCNGC 3 cut(s) 310, 345, 513
BlsI GCNGC 3 cut(s) 311, 346, 514
BmcAI AGTACT 2 cut(s) 220, 739
Bme1390I CCNGG 4 cut(s) 187, 321, 368, 576
Bme18I GGWCC 2 cut(s) 317, 857
BmeT110I CYCGRG 1 cut(s) 1094
BmgT120I GGNCC 4 cut(s) 317, 420, 569, 857
BmrFI CCNGG 4 cut(s) 187, 321, 368, 576
BmrI ACTGGG 1 cut(s) 606
BmsI GCATC 2 cut(s) 536, 1083
BmuI ACTGGG 1 cut(s) 606
BplI GAGNNNNNCTC 2 cut(s) 258, 290
BpmI CTGGAG 1 cut(s) 773
BpuEI CTTGAG 1 cut(s) 626
BsaHI GRCGYC 1 cut(s) 163
BsaI GGTCTC 1 cut(s) 965
BsaJI CCNNGG 5 cut(s) 185, 770, 883, 1095, 1151
Bsc4I CCNNNNNNNGG 2 cut(s) 257, 1034
Bse1I ACTGG 3 cut(s) 216, 612, 617
Bse3DI GCAATG 3 cut(s) 319, 571, 1022
BseBI CCWGG 4 cut(s) 187, 321, 368, 576
BseDI CCNNGG 5 cut(s) 185, 770, 883, 1095, 1151
BseGI GGATG 2 cut(s) 13, 527
BseLI CCNNNNNNNGG 2 cut(s) 257, 1034
BseMI GCAATG 3 cut(s) 319, 571, 1022
BseMII CTCAG 2 cut(s) 159, 875
BseNI ACTGG 3 cut(s) 216, 612, 617
BseRI GAGGAG 2 cut(s) 728, 770
BseXI GCAGC 3 cut(s) 321, 331, 499
BshFI GGCC 2 cut(s) 421, 570
BsiHKCI CYCGRG 1 cut(s) 1094
BslI CCNNNNNNNGG 2 cut(s) 257, 1034
BsmAI GTCTC 1 cut(s) 965
BsnI GGCC 2 cut(s) 421, 570
Bso31I GGTCTC 1 cut(s) 965
BsoBI CYCGRG 1 cut(s) 1094
Bsp1286I GDGCHC 1 cut(s) 612
Bsp143I GATC 5 cut(s) 138, 448, 760, 780, 927
BspACI CCGC 1 cut(s) 1039
BspANI GGCC 2 cut(s) 421, 570
BspCNI CTCAG 2 cut(s) 160, 874
BspMAI CTGCAG 2 cut(s) 311, 737
BspPI GGATC 1 cut(s) 768
BspTNI GGTCTC 1 cut(s) 965
BsrDI GCAATG 3 cut(s) 319, 571, 1022
BsrI ACTGG 3 cut(s) 216, 612, 617
BssECI CCNNGG 5 cut(s) 185, 770, 883, 1095, 1151
BssMI GATC 5 cut(s) 138, 448, 760, 780, 927
BssNI GRCGYC 1 cut(s) 163
BssT1I CCWWGG 2 cut(s) 770, 1151
Bst2UI CCWGG 4 cut(s) 187, 321, 368, 576
Bst4CI ACNGT 2 cut(s) 374, 989
Bst6I CTCTTC 1 cut(s) 95
BstACI GRCGYC 1 cut(s) 163
BstDEI CTNAG 3 cut(s) 44, 168, 861
BstEII GGTNACC 1 cut(s) 887
BstF5I GGATG 2 cut(s) 13, 527
BstKTI GATC 5 cut(s) 141, 451, 763, 783, 930
BstMAI GTCTC 1 cut(s) 965
BstMBI GATC 5 cut(s) 138, 448, 760, 780, 927
BstMWI GCNNNNNNNGC 1 cut(s) 576
BstNI CCWGG 4 cut(s) 187, 321, 368, 576
BstNSI RCATGY 2 cut(s) 631, 779
BstPI GGTNACC 1 cut(s) 887
BstSCI CCNGG 4 cut(s) 185, 319, 366, 574
BstSFI CTRYAG 3 cut(s) 307, 580, 733
BstV1I GCAGC 3 cut(s) 321, 331, 499
BstXI CCANNNNNNTGG 1 cut(s) 1152
BsuRI GGCC 2 cut(s) 421, 570
BtsCI GGATG 2 cut(s) 13, 527
BtsI GCAGTG 1 cut(s) 304
BtsIMutI CAGTG 2 cut(s) 304, 869
Cfr13I GGNCC 4 cut(s) 317, 420, 569, 857
CseI GACGC 1 cut(s) 152
Csp6I GTAC 3 cut(s) 219, 356, 738
CviAII CATG 6 cut(s) 142, 300, 435, 601, 628, 776
CviQI GTAC 3 cut(s) 219, 356, 738
DdeI CTNAG 3 cut(s) 44, 168, 861
DpnI GATC 5 cut(s) 140, 450, 762, 782, 929
DpnII GATC 5 cut(s) 138, 448, 760, 780, 927
DraI TTTAAA 1 cut(s) 336
DrdI GACNNNNNNGTC 1 cut(s) 377
DseDI GACNNNNNNGTC 1 cut(s) 377
Eam1104I CTCTTC 1 cut(s) 95
EarI CTCTTC 1 cut(s) 95
EciI GGCGGA 1 cut(s) 1054
Eco130I CCWWGG 2 cut(s) 770, 1151
Eco24I GRGCYC 1 cut(s) 612
Eco31I GGTCTC 1 cut(s) 965
Eco47I GGWCC 2 cut(s) 317, 857
Eco88I CYCGRG 1 cut(s) 1094
Eco91I GGTNACC 1 cut(s) 887
EcoO65I GGTNACC 1 cut(s) 887
EcoRII CCWGG 4 cut(s) 185, 319, 366, 574
EcoT14I CCWWGG 2 cut(s) 770, 1151
EcoT38I GRGCYC 1 cut(s) 612
ErhI CCWWGG 2 cut(s) 770, 1151
FaeI CATG 6 cut(s) 145, 303, 438, 604, 631, 779
FatI CATG 6 cut(s) 141, 299, 434, 600, 627, 775
FbaI TGATCA 2 cut(s) 138, 448
Fnu4HI GCNGC 3 cut(s) 310, 345, 513
FokI GGATG 1 cut(s) 514
FriOI GRGCYC 1 cut(s) 612
Fsp4HI GCNGC 3 cut(s) 310, 345, 513
FspBI CTAG 2 cut(s) 462, 692
GluI GCNGC 3 cut(s) 310, 345, 513
GsuI CTGGAG 1 cut(s) 773
HaeIII GGCC 2 cut(s) 421, 570
HgaI GACGC 1 cut(s) 152
Hin1I GRCGYC 1 cut(s) 163
Hin1II CATG 6 cut(s) 145, 303, 438, 604, 631, 779
HinfI GANTC 4 cut(s) 247, 439, 662, 814
HphI GGTGA 1 cut(s) 899
Hpy166II GTNNAC 2 cut(s) 271, 1140
Hpy188I TCNGA 1 cut(s) 712
Hpy188III TCNNGA 5 cut(s) 167, 752, 835, 878, 1125
Hpy8I GTNNAC 2 cut(s) 271, 1140
HpyAV CCTTC 5 cut(s) 28, 305, 812, 1027, 1099
HpyCH4III ACNGT 2 cut(s) 374, 989
HpyCH4V TGCA 6 cut(s) 75, 309, 330, 393, 515, 735
HpyF10VI GCNNNNNNNGC 1 cut(s) 576
HpyF3I CTNAG 3 cut(s) 44, 168, 861
Hsp92I GRCGYC 1 cut(s) 163
Hsp92II CATG 6 cut(s) 145, 303, 438, 604, 631, 779
Ksp22I TGATCA 2 cut(s) 138, 448
Kzo9I GATC 5 cut(s) 138, 448, 760, 780, 927
LmnI GCTCC 2 cut(s) 88, 1071
Lsp1109I GCAGC 3 cut(s) 321, 331, 499
LweI GCATC 2 cut(s) 536, 1083
MaeI CTAG 2 cut(s) 462, 692
MaeIII GTNAC 3 cut(s) 302, 887, 917
MalI GATC 5 cut(s) 140, 450, 762, 782, 929
MboI GATC 5 cut(s) 138, 448, 760, 780, 927
MboII GAAGA 3 cut(s) 112, 229, 859
MfeI CAATTG 1 cut(s) 123
MhlI GDGCHC 1 cut(s) 612
MluCI AATT 8 cut(s) 34, 65, 123, 430, 492, 700, 940, 1115
MlyI GAGTC 1 cut(s) 433
MseI TTAA 6 cut(s) 335, 539, 636, 852, 948, 1019
MspR9I CCNGG 4 cut(s) 187, 321, 368, 576
MunI CAATTG 1 cut(s) 123
MvaI CCWGG 4 cut(s) 187, 321, 368, 576
MwoI GCNNNNNNNGC 1 cut(s) 576
NdeII GATC 5 cut(s) 138, 448, 760, 780, 927
NlaIII CATG 6 cut(s) 145, 303, 438, 604, 631, 779
NmuCI GTSAC 2 cut(s) 302, 887
NspI RCATGY 2 cut(s) 631, 779
PciI ACATGT 1 cut(s) 627
PfeI GAWTC 3 cut(s) 247, 662, 814
PkrI GCNGC 3 cut(s) 311, 346, 514
PleI GAGTC 1 cut(s) 433
PpsI GAGTC 1 cut(s) 433
PscI ACATGT 1 cut(s) 627
PshBI ATTAAT 1 cut(s) 852
Psp6I CCWGG 4 cut(s) 185, 319, 366, 574
PspEI GGTNACC 1 cut(s) 887
PspGI CCWGG 4 cut(s) 185, 319, 366, 574
PspPI GGNCC 4 cut(s) 317, 420, 569, 857
PstI CTGCAG 2 cut(s) 311, 737
RsaI GTAC 3 cut(s) 220, 357, 739
RsaNI GTAC 3 cut(s) 219, 356, 738
SaqAI TTAA 6 cut(s) 335, 539, 636, 852, 948, 1019
SatI GCNGC 3 cut(s) 310, 345, 513
Sau3AI GATC 5 cut(s) 138, 448, 760, 780, 927
Sau96I GGNCC 4 cut(s) 317, 420, 569, 857
ScaI AGTACT 2 cut(s) 220, 739
SchI GAGTC 1 cut(s) 433
ScrFI CCNGG 4 cut(s) 187, 321, 368, 576
SduI GDGCHC 1 cut(s) 612
SfaNI GCATC 2 cut(s) 536, 1083
SfcI CTRYAG 3 cut(s) 307, 580, 733
SinI GGWCC 2 cut(s) 317, 857
SmlI CTYRAG 1 cut(s) 605
SmoI CTYRAG 1 cut(s) 605
Sse9I AATT 8 cut(s) 34, 65, 123, 430, 492, 700, 940, 1115
SsiI CCGC 1 cut(s) 1039
SspI AATATT 1 cut(s) 640
SspMI CTAG 2 cut(s) 462, 692
StyD4I CCNGG 4 cut(s) 185, 319, 366, 574
StyI CCWWGG 2 cut(s) 770, 1151
TaaI ACNGT 2 cut(s) 374, 989
TaqI TCGA 4 cut(s) 265, 826, 1031, 1126
TasI AATT 8 cut(s) 34, 65, 123, 430, 492, 700, 940, 1115
TatI WGTACW 2 cut(s) 218, 737
TfiI GAWTC 3 cut(s) 247, 662, 814
Tru1I TTAA 6 cut(s) 335, 539, 636, 852, 948, 1019
Tru9I TTAA 6 cut(s) 335, 539, 636, 852, 948, 1019
TscAI CASTG 2 cut(s) 311, 869
TseFI GTSAC 2 cut(s) 302, 887
TseI GCWGC 3 cut(s) 309, 344, 512
Tsp45I GTSAC 2 cut(s) 302, 887
TspDTI ATGAA 4 cut(s) 113, 194, 423, 1095
TspGWI ACGGA 1 cut(s) 536
TspRI CASTG 2 cut(s) 311, 869
VpaK11BI GGWCC 2 cut(s) 317, 857
VspI ATTAAT 1 cut(s) 852
XapI RAATTY 2 cut(s) 65, 700
XceI RCATGY 2 cut(s) 631, 779
XcmI CCANNNNNNNNNTGG 2 cut(s) 538, 563
XspI CTAG 2 cut(s) 462, 692
ZrmI AGTACT 2 cut(s) 220, 739
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.