Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005290.1

Orthogroup ID

OG0000142

Physical Location & Seq

Genomic Coordinates Reverse (-)

1657 .. 2091

Gene Structure 435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005290.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

atgcttggccctgtgacctgggtcccgtattttactgatttggaatggcggtatccttgtatagcaaaagattatgcatccaaggagttgtttatggttcttcgtcaaaggaatatagaagtaggattcaaagtgtacaagaccgattgtaggcggcctcagcgtctgcatggaaaaatgtgggagccgattactgaccttggtgatcggatattgtttccgaaagacaaaagtactaaggtcatcaatgacgagactcttgggaaaaactgcatctattttgctttcactagtaaaggtcgatgtgatggtcgatttggggtttattccttgaaagatagcagcattaaacccccatctgttcctgaagattatccatgtaccatatccgatgctaacagtcaaactctttggttcacaccatatccatattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000463 GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0010468 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0022613 GO:0030684 GO:0030686 GO:0031323 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044087 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0070545 GO:0071704 GO:0071840 GO:0080090 GO:0090069 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904 GO:2000232

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT_2 Pescadillo_N

Protein Analysis

144

Amino Acids

16.81

Weight (kDa)

8.77

Isoelectric Point (pI)

41.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000142)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13532 FvH4_2g28870 FvH4_3g30930 FvH4_3g37281 FvH4_3g37300 FvH4_3g37301 FvH4_3g37301 FvH4_4g23711 FvH4_5g02330 FvH4_6g16960 FvH4_6g16971 FvH4_6g21291 FvH4_6g21331 FvH4_6g22212 FvH4_6g22332 FvH4_6g36920 FvH4_6g37552 FvH4_6g37591 FvH4_6g39721 FvH4_6g46020 FvH4_6g47001 FvH4_6g47002 FvH4_6g47130 FvH4_6g47140 FvH4_6g47161 FvH4_6g47170 FvH4_6g47190 FvH4_6g49120 FvH4_6g49280 FvH4_6g49281 FvH4_6g49640 FvH4_6g49640
malus_domestica	MD03G1085600.v1.1 MD09G1027500.v1.1 MD09G1050100.v1.1
prunus_persica	Prupe.1G004300_v2.0.a1 Prupe.1G016300_v2.0.a1 Prupe.1G019300_v2.0.a1 Prupe.3G239100_v2.0.a1 Prupe.3G291200_v2.0.a1
pyrus_communis	pycom08g02840 pycom08g02860 pycom08g02870
rosa_chinensis	RchiOBHm_Chr2g0153831 RchiOBHm_Chr2g0166171 RchiOBHm_Chr2g0166201 RchiOBHm_Chr3g0476221 RchiOBHm_Chr4g0430971 RchiOBHm_Chr5g0067081 RchiOBHm_Chr7g0197821
rosa_laevigata	RLG00000001284 RLG00000006996 RLG00000012710 RLG00000019299 RLG00000020285 RLG00000020444 RLG00000020466 RLG00000020591 RLG00000020665 RLG00000020730 RLG00000020732 RLG00000021449 RLG00000021592 RLG00000021593 RLG00000021594 RLG00000021596 RLG00000021597 RLG00000021801 RLG00000023534 RLG00000023538 RLG00000023693 RLG00000023694 RLG00000023699 RLG00000024196 RLG00000024214 RLG00000024220 RLG00000024244 RLG00000024608 RLG00000024612 RLG00000035157 RLG00000035906
rosa_multiflora	Rmu_co8282815.1_g000001 Rmu_co8380495.1_g000001 Rmu_co8381111.1_g000001 Rmu_co8460513.1_g000001 Rmu_co8481947.1_g000001 Rmu_co8487937.1_g000001 Rmu_sc0000151.1_g000017 Rmu_sc0001427.1_g000003 Rmu_sc0001427.1_g000006 Rmu_sc0002611.1_g000008 Rmu_sc0003887.1_g000018 Rmu_sc0003887.1_g000019 Rmu_sc0003887.1_g000021 Rmu_sc0004119.1_g000004 Rmu_sc0004329.1_g000003 Rmu_sc0004485.1_g000024 Rmu_sc0005290.1_g000001 Rmu_sc0005609.1_g000006 Rmu_sc0006187.1_g000018 Rmu_sc0006218.1_g000032 Rmu_sc0006218.1_g000033 Rmu_sc0007150.1_g000003 Rmu_sc0007154.1_g000004 Rmu_sc0007154.1_g000005 Rmu_sc0007154.1_g000007 Rmu_sc0008314.1_g000012 Rmu_sc0010073.1_g000023 Rmu_sc0010073.1_g000025 Rmu_sc0011216.1_g000008 Rmu_sc0012445.1_g000005 Rmu_sc0013571.1_g000002 Rmu_sc0018648.1_g000002 Rmu_sc0020961.1_g000002 Rmu_sc0020961.1_g000003 Rmu_sc0023710.1_g000001 Rmu_sc0031310.1_g000008 Rmu_sc0033940.1_g000001 Rmu_sc0035493.1_g000001 Rmu_sc0039285.1_g000001
rosa_roxburghii	Rroxscaffold_1G00014000 Rroxscaffold_1G00014020 Rroxscaffold_2G00082760 Rroxscaffold_2G00085090 Rroxscaffold_2G00085100 Rroxscaffold_2G00085140 Rroxscaffold_2G00086670 Rroxscaffold_2G00086680 Rroxscaffold_2G00098190 Rroxscaffold_2G00099270 Rroxscaffold_3G00227460 Rroxscaffold_3G00258190 Rroxscaffold_3G00259780 Rroxscaffold_6G00402940 Rroxscaffold_6G00410200 Rroxscaffold_6G00410210 Rroxscaffold_7G00184320
rosa_rugosa	Rorug02G0416100 Rorug02G0416200 Rorug02G0520900 Rorug02G0521200 Rorug02G0521300 Rorug02G0534600 Rorug03G0116300 Rorug03G0162900 Rorug03G0162900 Rorug04G0241400 Rorug05G0380900 Rorug07G0043800
rosa_samantha	Rh1AG115300 Rh2BG483700 Rh2BG509900 Rh2BG515700 Rh2BG515800 Rh2BG586500 Rh2BG586600 Rh2BG586700 Rh2BG598800 Rh2BG598900 Rh2BG599100 Rh2BG618400 Rh2BG630500 Rh2CG457400 Rh2CG484900 Rh3AG165300 Rh3AG212900 Rh3AG213300 Rh3BG145800 Rh3BG146100 Rh3BG235300 Rh3BG246500 Rh3BG247000 Rh3BG247100 Rh3CG240300 Rh3CG240800 Rh3CG240900 Rh3CG259600 Rh3DG147000 Rh3DG184800 Rh3DG184900 Rh3DG185000 Rh3DG239500 Rh3DG240100 Rh3DG240200 Rh3DG255800 Rh5BG458500 Rh5CG480400 Rh7BG170400 Rh7BG407900 Rh7CG176900
rosa_wichuraiana	Rw2G038990 Rw2G041550 Rw2G047660 Rw2G048940 Rw4G026370 Rw6G008730 Rw7G014600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	49, 154
AcuI	CTGAAG	1 cut(s)	387
AfaI	GTAC	3 cut(s)	137, 235, 382
AfiI	CCNNNNNNNGG	1 cut(s)	150
AgsI	TTSAA	2 cut(s)	130, 334
AhlI	ACTAGT	1 cut(s)	290
AjnI	CCWGG	1 cut(s)	17
Alw26I	GTCTC	1 cut(s)	248
AlwNI	CAGNNNCTG	1 cut(s)	166
AoxI	GGCC	2 cut(s)	7, 155
ApeKI	GCWGC	1 cut(s)	342
AspS9I	GGNCC	2 cut(s)	8, 22
AsuHPI	GGTGA	1 cut(s)	215
AvaII	GGWCC	1 cut(s)	22
BbvCI	CCTCAGC	1 cut(s)	159
BbvI	GCAGC	1 cut(s)	354
BccI	CCATC	2 cut(s)	302, 364
BciT130I	CCWGG	1 cut(s)	19
BciVI	GTATCC	1 cut(s)	63
BcoDI	GTCTC	1 cut(s)	248
BcuI	ACTAGT	1 cut(s)	290
BfaI	CTAG	1 cut(s)	291
BfuI	GTATCC	1 cut(s)	63
BisI	GCNGC	2 cut(s)	155, 343
BlsI	GCNGC	2 cut(s)	156, 344
BmcAI	AGTACT	1 cut(s)	235
Bme1390I	CCNGG	1 cut(s)	19
Bme18I	GGWCC	1 cut(s)	22
BmgT120I	GGNCC	2 cut(s)	8, 22
BmiI	GGNNCC	3 cut(s)	23, 24, 186
BmrFI	CCNGG	1 cut(s)	19
BmsI	GCATC	3 cut(s)	86, 282, 382
BoxI	GACNNNNGTC	1 cut(s)	20
Bpu10I	CCTNAGC	1 cut(s)	159
BsaJI	CCNNGG	3 cut(s)	18, 81, 199
Bsc4I	CCNNNNNNNGG	1 cut(s)	150
BseBI	CCWGG	1 cut(s)	19
BseDI	CCNNGG	3 cut(s)	18, 81, 199
BseGI	GGATG	1 cut(s)	77
BseLI	CCNNNNNNNGG	1 cut(s)	150
BseMII	CTCAG	1 cut(s)	173
BseXI	GCAGC	1 cut(s)	354
BshFI	GGCC	2 cut(s)	9, 157
BslFI	GGGAC	1 cut(s)	8
BslI	CCNNNNNNNGG	1 cut(s)	150
BsmAI	GTCTC	1 cut(s)	248
BsmFI	GGGAC	1 cut(s)	8
BsnI	GGCC	2 cut(s)	9, 157
Bsp1407I	TGTACA	1 cut(s)	135
Bsp143I	GATC	1 cut(s)	205
BspACI	CCGC	2 cut(s)	49, 154
BspANI	GGCC	2 cut(s)	9, 157
BspCNI	CTCAG	1 cut(s)	172
BspLI	GGNNCC	3 cut(s)	23, 24, 186
BsrGI	TGTACA	1 cut(s)	135
BssECI	CCNNGG	3 cut(s)	18, 81, 199
BssMI	GATC	1 cut(s)	205
BssT1I	CCWWGG	2 cut(s)	81, 199
Bst2UI	CCWGG	1 cut(s)	19
Bst4CI	ACNGT	1 cut(s)	401
BstAUI	TGTACA	1 cut(s)	135
BstDEI	CTNAG	2 cut(s)	159, 237
BstF5I	GGATG	1 cut(s)	77
BstKTI	GATC	1 cut(s)	208
BstMAI	GTCTC	1 cut(s)	248
BstMBI	GATC	1 cut(s)	205
BstMWI	GCNNNNNNNGC	1 cut(s)	160
BstNI	CCWGG	1 cut(s)	19
BstPAI	GACNNNNGTC	1 cut(s)	20
BstSCI	CCNGG	1 cut(s)	17
BstV1I	GCAGC	1 cut(s)	354
BsuI	GTATCC	1 cut(s)	63
BsuRI	GGCC	2 cut(s)	9, 157
BtsCI	GGATG	1 cut(s)	77
CaiI	CAGNNNCTG	1 cut(s)	166
Cfr13I	GGNCC	2 cut(s)	8, 22
CseI	GACGC	1 cut(s)	152
Csp6I	GTAC	3 cut(s)	136, 234, 381
CviAII	CATG	2 cut(s)	170, 378
CviJI	RGCY	3 cut(s)	9, 157, 187
CviKI_1	RGCY	3 cut(s)	9, 157, 187
CviQI	GTAC	3 cut(s)	136, 234, 381
DdeI	CTNAG	2 cut(s)	159, 237
DpnI	GATC	1 cut(s)	207
DpnII	GATC	1 cut(s)	205
Eco130I	CCWWGG	2 cut(s)	81, 199
Eco47I	GGWCC	1 cut(s)	22
Eco57I	CTGAAG	1 cut(s)	387
EcoO109I	RGGNCCY	1 cut(s)	22
EcoRII	CCWGG	1 cut(s)	17
EcoT14I	CCWWGG	2 cut(s)	81, 199
EcoT22I	ATGCAT	1 cut(s)	79
ErhI	CCWWGG	2 cut(s)	81, 199
FaeI	CATG	2 cut(s)	173, 381
FaiI	YATR	9 cut(s)	62, 75, 95, 116, 171, 379, 386, 424, 430
FaqI	GGGAC	1 cut(s)	8
FatI	CATG	2 cut(s)	169, 377
Fnu4HI	GCNGC	2 cut(s)	155, 343
FokI	GGATG	1 cut(s)	64
Fsp4HI	GCNGC	2 cut(s)	155, 343
FspBI	CTAG	1 cut(s)	291
GluI	GCNGC	2 cut(s)	155, 343
HaeIII	GGCC	2 cut(s)	9, 157
HgaI	GACGC	1 cut(s)	152
Hin1II	CATG	2 cut(s)	173, 381
HinfI	GANTC	2 cut(s)	126, 256
HphI	GGTGA	1 cut(s)	215
Hpy166II	GTNNAC	2 cut(s)	136, 417
Hpy188I	TCNGA	3 cut(s)	210, 222, 391
Hpy188III	TCNNGA	1 cut(s)	365
Hpy8I	GTNNAC	2 cut(s)	136, 417
HpyCH4III	ACNGT	1 cut(s)	401
HpyCH4V	TGCA	3 cut(s)	77, 169, 273
HpyF10VI	GCNNNNNNNGC	1 cut(s)	160
HpyF3I	CTNAG	2 cut(s)	159, 237
Hsp92II	CATG	2 cut(s)	173, 381
KflI	GGGWCCC	1 cut(s)	22
Kzo9I	GATC	1 cut(s)	205
LmnI	GCTCC	1 cut(s)	184
LpnPI	CCDG	4 cut(s)	4, 24, 31, 378
Lsp1109I	GCAGC	1 cut(s)	354
LweI	GCATC	3 cut(s)	86, 282, 382
MaeI	CTAG	1 cut(s)	291
MaeIII	GTNAC	1 cut(s)	13
MalI	GATC	1 cut(s)	207
MboI	GATC	1 cut(s)	205
MboII	GAAGA	2 cut(s)	92, 380
MlyI	GAGTC	1 cut(s)	250
MnlI	CCTC	1 cut(s)	168
Mph1103I	ATGCAT	1 cut(s)	79
MseI	TTAA	2 cut(s)	348, 433
MspR9I	CCNGG	1 cut(s)	19
MvaI	CCWGG	1 cut(s)	19
MwoI	GCNNNNNNNGC	1 cut(s)	160
NdeII	GATC	1 cut(s)	205
NlaIII	CATG	2 cut(s)	173, 381
NlaIV	GGNNCC	3 cut(s)	23, 24, 186
NmuCI	GTSAC	1 cut(s)	13
NsiI	ATGCAT	1 cut(s)	79
PfeI	GAWTC	1 cut(s)	126
PkrI	GCNGC	2 cut(s)	156, 344
PleI	GAGTC	1 cut(s)	250
PpsI	GAGTC	1 cut(s)	250
PpuMI	RGGWCCY	1 cut(s)	22
PshAI	GACNNNNGTC	1 cut(s)	20
Psp5II	RGGWCCY	1 cut(s)	22
Psp6I	CCWGG	1 cut(s)	17
PspGI	CCWGG	1 cut(s)	17
PspN4I	GGNNCC	3 cut(s)	23, 24, 186
PspPI	GGNCC	2 cut(s)	8, 22
PspPPI	RGGWCCY	1 cut(s)	22
PstNI	CAGNNNCTG	1 cut(s)	166
RsaI	GTAC	3 cut(s)	137, 235, 382
RsaNI	GTAC	3 cut(s)	136, 234, 381
SaqAI	TTAA	2 cut(s)	348, 433
SatI	GCNGC	2 cut(s)	155, 343
Sau3AI	GATC	1 cut(s)	205
Sau96I	GGNCC	2 cut(s)	8, 22
ScaI	AGTACT	1 cut(s)	235
SchI	GAGTC	1 cut(s)	250
ScrFI	CCNGG	1 cut(s)	19
SetI	ASST	4 cut(s)	20, 201, 243, 301
SfaNI	GCATC	3 cut(s)	86, 282, 382
SinI	GGWCC	1 cut(s)	22
SpeI	ACTAGT	1 cut(s)	290
SsiI	CCGC	2 cut(s)	49, 154
SspMI	CTAG	1 cut(s)	291
StyD4I	CCNGG	1 cut(s)	17
StyI	CCWWGG	2 cut(s)	81, 199
TaaI	ACNGT	1 cut(s)	401
TaqI	TCGA	2 cut(s)	301, 313
TaqII	GACCGA	1 cut(s)	158
TatI	WGTACW	2 cut(s)	135, 233
TauI	GCSGC	1 cut(s)	157
TfiI	GAWTC	1 cut(s)	126
Tru1I	TTAA	2 cut(s)	348, 433
Tru9I	TTAA	2 cut(s)	348, 433
TseFI	GTSAC	1 cut(s)	13
TseI	GCWGC	1 cut(s)	342
Tsp45I	GTSAC	1 cut(s)	13
VpaK11BI	GGWCC	1 cut(s)	22
XspI	CTAG	1 cut(s)	291
ZrmI	AGTACT	1 cut(s)	235
Zsp2I	ATGCAT	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.