MD09G1050100.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0000142
Physical Location & Seq
Reverse (-)
3335204 .. 3336526
1323 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1050100.v1.1.491

Sequence Viewer

Length: 1323 bp
ATGGTTCTGGGAATGGATTCATTAATCCGGATTGGGAGGAGGATCTATAACTATAAGCATACAATTGGTAATCGGTCATCGGCTCGAGTTTCCGACGATGATCGGAGCAAGCGTTGCCATTCTCCTGCTCGTCAACTTCCCCGGCTTATGCTCCGCTCCACTAGTCGAAAACTCAACAATACACATCGTAAAGATCATTGTTTTCTCAGTCTAAGCGACGAAAAGATTTACAAACTATCGAGTCCCTCTTGTAATAACGACTGTGTTGGGTCGATCGAGGGTTGGTTAATCGTGGTTGATCATGAATTCGTCCAGCCGGCCGAGGGTTTCAGATCATTCCAGTCATTGAATAACGAGAGCCGTAGTTCTTTTGGTGCTATCTACTTCTTGAATCCGACATCACGCGAACGAGTTAGAGTTATGCTTCCATCGCAATTCAACTTTCCTTGCGGCAAGGGCAACCAACAGTCCTTCAAGTTCAAGAAAATAGTAGCCTCTTCAGCACCAACGAGCCCGCATTGTGTTGTGGCAGGACTTTGTTCGCAAGACTTTGACGACCAAAAAAAGGAAAAAAGACTTTGTTCACAAGGCCGTTTGGCAATTTGTAGGCCTACTGATATGTCATGGACTCTAATTGAAGGTTGGGATGTCCGAGGGCTCGACTTTTGCGACATAGAAATAATTGACGGGAAATTATACGCGGCAACAAGAGAGGCATCGGAGTTTATCATGGCGTTTGACATCGAAGATGCCATGAAAAACGTTGGTCATCCTAACTATGCTGTTGAAAATTTGGTTATGCGTAAGCCCGGGCCAATTCCTTTACAAATTACCACAAGGGACGATGGAGAAATCAGAGACGACGTTTACCTAGCAAAAGATGCTGCATCGAAGGAGCTGTTCATGATTTTCCGCGGTAATAGCTTTGTTCGTGAGAAGGATTCGATAATCTGTTGGTCGGACATCAAGGGTTGTGACAATTTCGTTATTCCGCCGGAGACTTTTGGATTTCAAGTGTTCAGGTTGGAGTGTGCTGGTAATGGTCATGAATGGGTGATAGTTTCGGACCTTGGCGATCGAATATTGTTTGTGAGCAAGGCTAGCAACATGTTCCTCTCTGCAACCGATACTGTTTGCGAGAAGACACTTGAGAGAAACTGCATTTGTTTTGCGTTCGATAATTTCTGCTCGAGTTCACCGTCGAGGGGGCGCGATATTGGGGTGTTTTCGTTGACAAACAAGAGCATCATGAACTTCAACTGCCTCAAGGATTTACGTGGAGAATTAGACGCTCCACCTATATGGTTCACATCAAATAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295

Protein Analysis

441

Amino Acids

49.81

Weight (kDa)

7.8

Isoelectric Point (pI)

43.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 68 - 410 3.8e-35 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000142)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13532 FvH4_2g28870 FvH4_3g30930 FvH4_3g37281 FvH4_3g37300 FvH4_3g37301 FvH4_3g37301 FvH4_4g23711 FvH4_5g02330 FvH4_6g16960 FvH4_6g16971 FvH4_6g21291 FvH4_6g21331 FvH4_6g22212 FvH4_6g22332 FvH4_6g36920 FvH4_6g37552 FvH4_6g37591 FvH4_6g39721 FvH4_6g46020 FvH4_6g47001 FvH4_6g47002 FvH4_6g47130 FvH4_6g47140 FvH4_6g47161 FvH4_6g47170 FvH4_6g47190 FvH4_6g49120 FvH4_6g49280 FvH4_6g49281 FvH4_6g49640 FvH4_6g49640
malus_domestica MD03G1085600.v1.1 MD09G1027500.v1.1 MD09G1050100.v1.1
prunus_persica Prupe.1G004300_v2.0.a1 Prupe.1G016300_v2.0.a1 Prupe.1G019300_v2.0.a1 Prupe.3G239100_v2.0.a1 Prupe.3G291200_v2.0.a1
pyrus_communis pycom08g02840 pycom08g02860 pycom08g02870
rosa_chinensis RchiOBHm_Chr2g0153831 RchiOBHm_Chr2g0166171 RchiOBHm_Chr2g0166201 RchiOBHm_Chr3g0476221 RchiOBHm_Chr4g0430971 RchiOBHm_Chr5g0067081 RchiOBHm_Chr7g0197821
rosa_laevigata RLG00000001284 RLG00000006996 RLG00000012710 RLG00000019299 RLG00000020285 RLG00000020444 RLG00000020466 RLG00000020591 RLG00000020665 RLG00000020730 RLG00000020732 RLG00000021449 RLG00000021592 RLG00000021593 RLG00000021594 RLG00000021596 RLG00000021597 RLG00000021801 RLG00000023534 RLG00000023538 RLG00000023693 RLG00000023694 RLG00000023699 RLG00000024196 RLG00000024214 RLG00000024220 RLG00000024244 RLG00000024608 RLG00000024612 RLG00000035157 RLG00000035906
rosa_multiflora Rmu_co8282815.1_g000001 Rmu_co8380495.1_g000001 Rmu_co8381111.1_g000001 Rmu_co8460513.1_g000001 Rmu_co8481947.1_g000001 Rmu_co8487937.1_g000001 Rmu_sc0000151.1_g000017 Rmu_sc0001427.1_g000003 Rmu_sc0001427.1_g000006 Rmu_sc0002611.1_g000008 Rmu_sc0003887.1_g000018 Rmu_sc0003887.1_g000019 Rmu_sc0003887.1_g000021 Rmu_sc0004119.1_g000004 Rmu_sc0004329.1_g000003 Rmu_sc0004485.1_g000024 Rmu_sc0005290.1_g000001 Rmu_sc0005609.1_g000006 Rmu_sc0006187.1_g000018 Rmu_sc0006218.1_g000032 Rmu_sc0006218.1_g000033 Rmu_sc0007150.1_g000003 Rmu_sc0007154.1_g000004 Rmu_sc0007154.1_g000005 Rmu_sc0007154.1_g000007 Rmu_sc0008314.1_g000012 Rmu_sc0010073.1_g000023 Rmu_sc0010073.1_g000025 Rmu_sc0011216.1_g000008 Rmu_sc0012445.1_g000005 Rmu_sc0013571.1_g000002 Rmu_sc0018648.1_g000002 Rmu_sc0020961.1_g000002 Rmu_sc0020961.1_g000003 Rmu_sc0023710.1_g000001 Rmu_sc0031310.1_g000008 Rmu_sc0033940.1_g000001 Rmu_sc0035493.1_g000001 Rmu_sc0039285.1_g000001
rosa_roxburghii Rroxscaffold_1G00014000 Rroxscaffold_1G00014020 Rroxscaffold_2G00082760 Rroxscaffold_2G00085090 Rroxscaffold_2G00085100 Rroxscaffold_2G00085140 Rroxscaffold_2G00086670 Rroxscaffold_2G00086680 Rroxscaffold_2G00098190 Rroxscaffold_2G00099270 Rroxscaffold_3G00227460 Rroxscaffold_3G00258190 Rroxscaffold_3G00259780 Rroxscaffold_6G00402940 Rroxscaffold_6G00410200 Rroxscaffold_6G00410210 Rroxscaffold_7G00184320
rosa_rugosa Rorug02G0416100 Rorug02G0416200 Rorug02G0520900 Rorug02G0521200 Rorug02G0521300 Rorug02G0534600 Rorug03G0116300 Rorug03G0162900 Rorug03G0162900 Rorug04G0241400 Rorug05G0380900 Rorug07G0043800
rosa_samantha Rh1AG115300 Rh2BG483700 Rh2BG509900 Rh2BG515700 Rh2BG515800 Rh2BG586500 Rh2BG586600 Rh2BG586700 Rh2BG598800 Rh2BG598900 Rh2BG599100 Rh2BG618400 Rh2BG630500 Rh2CG457400 Rh2CG484900 Rh3AG165300 Rh3AG212900 Rh3AG213300 Rh3BG145800 Rh3BG146100 Rh3BG235300 Rh3BG246500 Rh3BG247000 Rh3BG247100 Rh3CG240300 Rh3CG240800 Rh3CG240900 Rh3CG259600 Rh3DG147000 Rh3DG184800 Rh3DG184900 Rh3DG185000 Rh3DG239500 Rh3DG240100 Rh3DG240200 Rh3DG255800 Rh5BG458500 Rh5CG480400 Rh7BG170400 Rh7BG407900 Rh7CG176900
rosa_wichuraiana Rw2G038990 Rw2G041550 Rw2G047660 Rw2G048940 Rw4G026370 Rw6G008730 Rw7G014600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 156
AccII CGCG 4 cut(s) 405, 701, 915, 1212
AccIII TCCGGA 1 cut(s) 27
AciI CCGC 7 cut(s) 154, 450, 515, 701, 913, 915, 992
AclI AACGTT 1 cut(s) 762
AclWI GGATC 1 cut(s) 50
AcoI YGGCCR 1 cut(s) 318
AcsI RAATTY 2 cut(s) 305, 790
AcuI CTGAAG 1 cut(s) 483
AfiI CCNNNNNNNGG 3 cut(s) 323, 565, 1205
AflIII ACRYGT 1 cut(s) 1107
AgsI TTSAA 9 cut(s) 349, 391, 439, 475, 481, 638, 788, 1013, 1258
AhlI ACTAGT 1 cut(s) 161
AluBI AGCT 2 cut(s) 898, 924
AluI AGCT 2 cut(s) 898, 924
Alw26I GTCTC 2 cut(s) 852, 992
AlwI GGATC 1 cut(s) 50
Ama87I CYCGRG 3 cut(s) 84, 809, 1189
Aor13HI TCCGGA 1 cut(s) 27
AoxI GGCC 4 cut(s) 318, 589, 608, 812
ApeKI GCWGC 1 cut(s) 884
ApoI RAATTY 2 cut(s) 305, 790
AseI ATTAAT 1 cut(s) 23
Asp700I GAANNNNTTC 1 cut(s) 16
AspLEI GCGC 1 cut(s) 1212
AspS9I GGNCC 2 cut(s) 812, 1066
AsuC2I CCSGG 3 cut(s) 142, 810, 811
AsuHPI GGTGA 2 cut(s) 1066, 1188
AsuNHI GCTAGC 1 cut(s) 1100
AvaI CYCGRG 3 cut(s) 84, 809, 1189
AvaII GGWCC 1 cut(s) 1066
BanII GRGCYC 2 cut(s) 515, 660
BbsI GAAGAC 1 cut(s) 1148
BbvI GCAGC 1 cut(s) 871
BccI CCATC 2 cut(s) 436, 839
BceAI ACGGC 2 cut(s) 345, 576
BclI TGATCA 1 cut(s) 298
BcnI CCSGG 3 cut(s) 142, 810, 811
BcoDI GTCTC 2 cut(s) 852, 992
BcuI ACTAGT 1 cut(s) 161
BfaI CTAG 3 cut(s) 162, 872, 1101
BisI GCNGC 3 cut(s) 451, 702, 885
BlsI GCNGC 3 cut(s) 452, 703, 886
Bme1390I CCNGG 3 cut(s) 142, 810, 811
Bme18I GGWCC 1 cut(s) 1066
BmeT110I CYCGRG 3 cut(s) 84, 809, 1189
BmgT120I GGNCC 2 cut(s) 812, 1066
BmrFI CCNGG 3 cut(s) 142, 810, 811
BmsI GCATC 5 cut(s) 725, 739, 871, 896, 1254
BmtI GCTAGC 1 cut(s) 1104
BpiI GAAGAC 1 cut(s) 1148
BpuEI CTTGAG 2 cut(s) 1169, 1250
BpuMI CCSGG 3 cut(s) 142, 810, 811
BsaAI YACGTR 1 cut(s) 1277
BsaJI CCNNGG 6 cut(s) 140, 321, 652, 809, 913, 1069
BsaWI WCCGGW 1 cut(s) 27
BsaXI ACNNNNNCTCC 2 cut(s) 97, 127
Bsc4I CCNNNNNNNGG 3 cut(s) 323, 565, 1205
Bse118I RCCGGY 1 cut(s) 316
Bse1I ACTGG 1 cut(s) 340
BseAI TCCGGA 1 cut(s) 27
BseDI CCNNGG 6 cut(s) 140, 321, 652, 809, 913, 1069
BseGI GGATG 2 cut(s) 652, 769
BseLI CCNNNNNNNGG 3 cut(s) 323, 565, 1205
BseMII CTCAG 1 cut(s) 220
BseNI ACTGG 1 cut(s) 340
BseRI GAGGAG 1 cut(s) 52
BseX3I CGGCCG 1 cut(s) 318
BseXI GCAGC 1 cut(s) 871
Bsh1236I CGCG 4 cut(s) 405, 701, 915, 1212
Bsh1285I CGRYCG 3 cut(s) 276, 321, 1078
BshFI GGCC 4 cut(s) 320, 591, 610, 814
BsiEI CGRYCG 3 cut(s) 276, 321, 1078
BsiHKCI CYCGRG 3 cut(s) 84, 809, 1189
BsiSI CCGG 5 cut(s) 28, 142, 317, 810, 995
BslFI GGGAC 2 cut(s) 228, 854
BslI CCNNNNNNNGG 3 cut(s) 323, 565, 1205
BsmAI GTCTC 2 cut(s) 852, 992
BsmBI CGTCTC 1 cut(s) 852
BsmFI GGGAC 2 cut(s) 228, 854
BsnI GGCC 4 cut(s) 320, 591, 610, 814
BsoBI CYCGRG 3 cut(s) 84, 809, 1189
Bsp1286I GDGCHC 2 cut(s) 515, 660
Bsp13I TCCGGA 1 cut(s) 27
Bsp143I GATC 7 cut(s) 42, 100, 193, 273, 298, 332, 1075
BspACI CCGC 7 cut(s) 154, 450, 515, 701, 913, 915, 992
BspANI GGCC 4 cut(s) 320, 591, 610, 814
BspCNI CTCAG 1 cut(s) 219
BspEI TCCGGA 1 cut(s) 27
BspFNI CGCG 4 cut(s) 405, 701, 915, 1212
BspHI TCATGA 4 cut(s) 301, 903, 1045, 1248
BspOI GCTAGC 1 cut(s) 1104
BspPI GGATC 1 cut(s) 50
BsrBI CCGCTC 1 cut(s) 156
BsrFI RCCGGY 1 cut(s) 316
BsrI ACTGG 1 cut(s) 340
BssAI RCCGGY 1 cut(s) 316
BssECI CCNNGG 6 cut(s) 140, 321, 652, 809, 913, 1069
BssMI GATC 7 cut(s) 42, 100, 193, 273, 298, 332, 1075
BssT1I CCWWGG 1 cut(s) 1069
Bst4CI ACNGT 4 cut(s) 263, 468, 1132, 1200
Bst6I CTCTTC 1 cut(s) 502
BstAPI GCANNNNNTGC 2 cut(s) 114, 881
BstBAI YACGTR 1 cut(s) 1277
BstC8I GCNNGC 4 cut(s) 110, 318, 515, 1102
BstDEI CTNAG 2 cut(s) 206, 212
BstDSI CCRYGG 1 cut(s) 913
BstF5I GGATG 2 cut(s) 652, 769
BstFNI CGCG 4 cut(s) 405, 701, 915, 1212
BstHHI GCGC 1 cut(s) 1212
BstKTI GATC 7 cut(s) 45, 103, 196, 276, 301, 335, 1078
BstMAI GTCTC 2 cut(s) 852, 992
BstMBI GATC 7 cut(s) 42, 100, 193, 273, 298, 332, 1075
BstMCI CGRYCG 3 cut(s) 276, 321, 1078
BstMWI GCNNNNNNNGC 7 cut(s) 114, 430, 456, 500, 881, 921, 1101
BstNSI RCATGY 1 cut(s) 1111
BstSCI CCNGG 3 cut(s) 140, 808, 809
BstUI CGCG 4 cut(s) 405, 701, 915, 1212
BstV1I GCAGC 1 cut(s) 871
BstV2I GAAGAC 1 cut(s) 1148
BstX2I RGATCY 1 cut(s) 42
BstXI CCANNNNNNTGG 1 cut(s) 1302
BstYI RGATCY 1 cut(s) 42
BstZI CGGCCG 1 cut(s) 318
BsuRI GGCC 4 cut(s) 320, 591, 610, 814
BtgI CCRYGG 1 cut(s) 913
BtgZI GCGATG 1 cut(s) 414
BtsCI GGATG 2 cut(s) 652, 769
Cac8I GCNNGC 4 cut(s) 110, 318, 515, 1102
CciI TCATGA 4 cut(s) 301, 903, 1045, 1248
CfoI GCGC 1 cut(s) 1212
Cfr10I RCCGGY 1 cut(s) 316
Cfr13I GGNCC 2 cut(s) 812, 1066
Cfr42I CCGCGG 1 cut(s) 916
Cfr9I CCCGGG 1 cut(s) 809
CseI GACGC 1 cut(s) 1298
CviAII CATG 8 cut(s) 302, 624, 730, 754, 904, 1046, 1108, 1249
DdeI CTNAG 2 cut(s) 206, 212
DpnI GATC 7 cut(s) 44, 102, 195, 275, 300, 334, 1077
DpnII GATC 7 cut(s) 42, 100, 193, 273, 298, 332, 1075
EaeI YGGCCR 1 cut(s) 318
EagI CGGCCG 1 cut(s) 318
Eam1104I CTCTTC 1 cut(s) 502
EarI CTCTTC 1 cut(s) 502
EciI GGCGGA 1 cut(s) 981
EclXI CGGCCG 1 cut(s) 318
Eco130I CCWWGG 1 cut(s) 1069
Eco147I AGGCCT 1 cut(s) 610
Eco24I GRGCYC 2 cut(s) 515, 660
Eco47I GGWCC 1 cut(s) 1066
Eco52I CGGCCG 1 cut(s) 318
Eco57I CTGAAG 1 cut(s) 483
Eco88I CYCGRG 3 cut(s) 84, 809, 1189
EcoRI GAATTC 1 cut(s) 305
EcoT14I CCWWGG 1 cut(s) 1069
EcoT38I GRGCYC 2 cut(s) 515, 660
ErhI CCWWGG 1 cut(s) 1069
Esp3I CGTCTC 1 cut(s) 852
FaeI CATG 8 cut(s) 305, 627, 733, 757, 907, 1049, 1111, 1252
FaqI GGGAC 2 cut(s) 228, 854
FatI CATG 8 cut(s) 301, 623, 729, 753, 903, 1045, 1107, 1248
FauI CCCGC 1 cut(s) 522
FbaI TGATCA 1 cut(s) 298
Fnu4HI GCNGC 3 cut(s) 451, 702, 885
FokI GGATG 2 cut(s) 659, 756
FriOI GRGCYC 2 cut(s) 515, 660
Fsp4HI GCNGC 3 cut(s) 451, 702, 885
FspBI CTAG 3 cut(s) 162, 872, 1101
GlaI GCGC 1 cut(s) 1211
GluI GCNGC 3 cut(s) 451, 702, 885
HaeIII GGCC 4 cut(s) 320, 591, 610, 814
HapII CCGG 5 cut(s) 28, 142, 317, 810, 995
HgaI GACGC 1 cut(s) 1298
HhaI GCGC 1 cut(s) 1212
Hin1II CATG 8 cut(s) 305, 627, 733, 757, 907, 1049, 1111, 1252
Hin6I GCGC 1 cut(s) 1210
HinP1I GCGC 1 cut(s) 1210
HincII GTYRAC 2 cut(s) 134, 1233
HindII GTYRAC 2 cut(s) 134, 1233
HinfI GANTC 5 cut(s) 17, 241, 391, 628, 941
HpaII CCGG 5 cut(s) 28, 142, 317, 810, 995
HphI GGTGA 2 cut(s) 1066, 1188
Hpy166II GTNNAC 6 cut(s) 134, 584, 868, 1196, 1233, 1308
Hpy188I TCNGA 9 cut(s) 94, 105, 332, 396, 653, 721, 857, 961, 1066
Hpy188III TCNNGA 8 cut(s) 28, 302, 388, 481, 904, 932, 1046, 1249
Hpy8I GTNNAC 6 cut(s) 134, 584, 868, 1196, 1233, 1308
Hpy99I CGWCG 4 cut(s) 98, 221, 866, 1204
HpyAV CCTTC 4 cut(s) 481, 632, 886, 931
HpyCH4III ACNGT 4 cut(s) 263, 468, 1132, 1200
HpyCH4IV ACGT 3 cut(s) 762, 864, 1276
HpyCH4V TGCA 3 cut(s) 887, 1121, 1161
HpyF10VI GCNNNNNNNGC 7 cut(s) 114, 430, 456, 500, 881, 921, 1101
HpyF3I CTNAG 2 cut(s) 206, 212
HpySE526I ACGT 3 cut(s) 762, 864, 1276
Hsp92II CATG 8 cut(s) 305, 627, 733, 757, 907, 1049, 1111, 1252
HspAI GCGC 1 cut(s) 1210
Kpn2I TCCGGA 1 cut(s) 27
KroI GCCGGC 1 cut(s) 316
KroNI GCCGGC 1 cut(s) 318
Ksp22I TGATCA 1 cut(s) 298
KspI CCGCGG 1 cut(s) 916
Kzo9I GATC 7 cut(s) 42, 100, 193, 273, 298, 332, 1075
LmnI GCTCC 5 cut(s) 105, 156, 161, 895, 1297
Lsp1109I GCAGC 1 cut(s) 871
LweI GCATC 5 cut(s) 725, 739, 871, 896, 1254
MaeI CTAG 3 cut(s) 162, 872, 1101
MaeII ACGT 3 cut(s) 762, 864, 1276
MaeIII GTNAC 1 cut(s) 974
MalI GATC 7 cut(s) 44, 102, 195, 275, 300, 334, 1077
MbiI CCGCTC 1 cut(s) 156
MboI GATC 7 cut(s) 42, 100, 193, 273, 298, 332, 1075
MboII GAAGA 3 cut(s) 489, 758, 1153
MfeI CAATTG 1 cut(s) 63
MflI RGATCY 1 cut(s) 42
MhlI GDGCHC 2 cut(s) 515, 660
MlyI GAGTC 2 cut(s) 250, 622
MmeI TCCRAC 4 cut(s) 117, 419, 939, 1005
MroI TCCGGA 1 cut(s) 27
MroNI GCCGGC 1 cut(s) 316
MroXI GAANNNNTTC 1 cut(s) 16
MseI TTAA 2 cut(s) 23, 287
MslI CAYNNNNRTG 1 cut(s) 1300
MspA1I CMGCKG 1 cut(s) 915
MspI CCGG 5 cut(s) 28, 142, 317, 810, 995
MspR9I CCNGG 3 cut(s) 142, 810, 811
MunI CAATTG 1 cut(s) 63
MvnI CGCG 4 cut(s) 405, 701, 915, 1212
MwoI GCNNNNNNNGC 7 cut(s) 114, 430, 456, 500, 881, 921, 1101
NaeI GCCGGC 1 cut(s) 318
NciI CCSGG 3 cut(s) 142, 810, 811
NdeII GATC 7 cut(s) 42, 100, 193, 273, 298, 332, 1075
NgoMIV GCCGGC 1 cut(s) 316
NheI GCTAGC 1 cut(s) 1100
NlaIII CATG 8 cut(s) 305, 627, 733, 757, 907, 1049, 1111, 1252
NmeAIII GCCGAG 1 cut(s) 346
NmuCI GTSAC 1 cut(s) 974
NspI RCATGY 1 cut(s) 1111
PaeR7I CTCGAG 2 cut(s) 84, 1189
PagI TCATGA 4 cut(s) 301, 903, 1045, 1248
PceI AGGCCT 1 cut(s) 610
PciI ACATGT 1 cut(s) 1107
PcsI WCGNNNNNNNCGW 3 cut(s) 109, 666, 1196
PdiI GCCGGC 1 cut(s) 318
PdmI GAANNNNTTC 1 cut(s) 16
PfeI GAWTC 3 cut(s) 17, 391, 941
PkrI GCNGC 3 cut(s) 452, 703, 886
Ple19I CGATCG 2 cut(s) 276, 1078
PleI GAGTC 2 cut(s) 249, 622
PpsI GAGTC 2 cut(s) 249, 622
Ppu21I YACGTR 1 cut(s) 1277
PscI ACATGT 1 cut(s) 1107
PshBI ATTAAT 1 cut(s) 23
Psp1406I AACGTT 1 cut(s) 762
PspPI GGNCC 2 cut(s) 812, 1066
PspXI VCTCGAGB 2 cut(s) 84, 1189
PsuI RGATCY 1 cut(s) 42
PvuI CGATCG 2 cut(s) 276, 1078
RseI CAYNNNNRTG 1 cut(s) 1300
SacII CCGCGG 1 cut(s) 916
SaqAI TTAA 2 cut(s) 23, 287
SatI GCNGC 3 cut(s) 451, 702, 885
Sau3AI GATC 7 cut(s) 42, 100, 193, 273, 298, 332, 1075
Sau96I GGNCC 2 cut(s) 812, 1066
SchI GAGTC 2 cut(s) 250, 622
ScrFI CCNGG 3 cut(s) 142, 810, 811
SduI GDGCHC 2 cut(s) 515, 660
SfaNI GCATC 5 cut(s) 725, 739, 871, 896, 1254
Sfr274I CTCGAG 2 cut(s) 84, 1189
Sfr303I CCGCGG 1 cut(s) 916
SgrBI CCGCGG 1 cut(s) 916
SinI GGWCC 1 cut(s) 1066
SlaI CTCGAG 2 cut(s) 84, 1189
SmaI CCCGGG 1 cut(s) 811
SmiMI CAYNNNNRTG 1 cut(s) 1300
SmlI CTYRAG 4 cut(s) 84, 1148, 1189, 1265
SmoI CTYRAG 4 cut(s) 84, 1148, 1189, 1265
SpeI ACTAGT 1 cut(s) 161
SrfI GCCCGGGC 1 cut(s) 811
SseBI AGGCCT 1 cut(s) 610
SsiI CCGC 7 cut(s) 154, 450, 515, 701, 913, 915, 992
SspI AATATT 1 cut(s) 1083
SspMI CTAG 3 cut(s) 162, 872, 1101
StuI AGGCCT 1 cut(s) 610
StyD4I CCNGG 3 cut(s) 140, 808, 809
StyI CCWWGG 1 cut(s) 1069
TaaI ACNGT 4 cut(s) 263, 468, 1132, 1200
TaiI ACGT 3 cut(s) 765, 867, 1279
TaqII GACCGA 1 cut(s) 63
TauI GCSGC 2 cut(s) 453, 704
TfiI GAWTC 3 cut(s) 17, 391, 941
Tru1I TTAA 2 cut(s) 23, 287
Tru9I TTAA 2 cut(s) 23, 287
TseFI GTSAC 1 cut(s) 974
TseI GCWGC 1 cut(s) 884
Tsp45I GTSAC 1 cut(s) 974
TspDTI ATGAA 6 cut(s) 9, 318, 770, 892, 1062, 1265
TspMI CCCGGG 1 cut(s) 809
VpaK11BI GGWCC 1 cut(s) 1066
VspI ATTAAT 1 cut(s) 23
XapI RAATTY 2 cut(s) 305, 790
XceI RCATGY 1 cut(s) 1111
XhoI CTCGAG 2 cut(s) 84, 1189
XmaI CCCGGG 1 cut(s) 809
XmnI GAANNNNTTC 1 cut(s) 16
XspI CTAG 3 cut(s) 162, 872, 1101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.