Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0000142

Physical Location & Seq

Genomic Coordinates Reverse (-)

1165918 .. 1166783

Gene Structure 866 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G016300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGCAATCGGTTCTACAAAGGCTATCCATATTCGATTATTTTCGGTGTCGCTCAGTATGCCGTTCATGGCGAGACTCTGTTGATAGGGCAATTTCCAGCAAACGGTGTCGTCCTGCTCCTCAACTTCCATGGCTTTTCTGTTCTCGTGATCGCAATTTTTTAAGCTACTGTGAGTATGAGCCGAAGTTTTACAAATTAAATCTGCCGAGTGATGATGCGCATGATGAATATGTTGGGTCAATTGAGGGGTGGTTGATGAGAGTTGATGGGACTGGATCCATAATTGCCTTACTGAATCCCATCTCTGGTAGCCGAGTGATGCTTCCATCATGCAAACATGAGCTCACAGCTGCCTCCATCAGTAAACTTGTAGCCTCTTCAGTACCAAGCCCCCCATCCCTCCATACGTGGCTGGGTGTCTGTAGACCCACTGATAAATCATGGACCCGAATTGATGAGGAGGTCCTCAACTTTGAATCTATAGAGTTCATCGATGGGAAGCTATATGCTGCAACCAAGAACCTGTCCCAGTTTTTATTAGTGTATCAGTTTGACACAAATGATCAACAACTCCACTACACAGCTCGAAGGTTGGTTGTACTTGACGACACCCCCAGGCTGCCAGATCGTGAGAGGTTCGACTATATATTTAGGATAAAAAAGGGTCATCTTTCCCTTGCAAAAGATTTCTCTACATCAAAGGACTTGATTATGATTACTTTTCCGGACAATCATACTGTGAATCTGCTTGTATGTCCACCTAATTATGCTGAAGCATTTCAAGTCTTCAAGCTGGATATTGTTTCTATGCCAGAAATGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000463 GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0010468 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0022613 GO:0030684 GO:0030686 GO:0031323 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044087 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0070545 GO:0071704 GO:0071840 GO:0080090 GO:0090069 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904 GO:2000232

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT_2 Pescadillo_N

Protein Analysis

275

Amino Acids

31.59

Weight (kDa)

6.99

Isoelectric Point (pI)

43.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000142)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13532 FvH4_2g28870 FvH4_3g30930 FvH4_3g37281 FvH4_3g37300 FvH4_3g37301 FvH4_3g37301 FvH4_4g23711 FvH4_5g02330 FvH4_6g16960 FvH4_6g16971 FvH4_6g21291 FvH4_6g21331 FvH4_6g22212 FvH4_6g22332 FvH4_6g36920 FvH4_6g37552 FvH4_6g37591 FvH4_6g39721 FvH4_6g46020 FvH4_6g47001 FvH4_6g47002 FvH4_6g47130 FvH4_6g47140 FvH4_6g47161 FvH4_6g47170 FvH4_6g47190 FvH4_6g49120 FvH4_6g49280 FvH4_6g49281 FvH4_6g49640 FvH4_6g49640
malus_domestica	MD03G1085600.v1.1 MD09G1027500.v1.1 MD09G1050100.v1.1
prunus_persica	Prupe.1G004300_v2.0.a1 Prupe.1G016300_v2.0.a1 Prupe.1G019300_v2.0.a1 Prupe.3G239100_v2.0.a1 Prupe.3G291200_v2.0.a1
pyrus_communis	pycom08g02840 pycom08g02860 pycom08g02870
rosa_chinensis	RchiOBHm_Chr2g0153831 RchiOBHm_Chr2g0166171 RchiOBHm_Chr2g0166201 RchiOBHm_Chr3g0476221 RchiOBHm_Chr4g0430971 RchiOBHm_Chr5g0067081 RchiOBHm_Chr7g0197821
rosa_laevigata	RLG00000001284 RLG00000006996 RLG00000012710 RLG00000019299 RLG00000020285 RLG00000020444 RLG00000020466 RLG00000020591 RLG00000020665 RLG00000020730 RLG00000020732 RLG00000021449 RLG00000021592 RLG00000021593 RLG00000021594 RLG00000021596 RLG00000021597 RLG00000021801 RLG00000023534 RLG00000023538 RLG00000023693 RLG00000023694 RLG00000023699 RLG00000024196 RLG00000024214 RLG00000024220 RLG00000024244 RLG00000024608 RLG00000024612 RLG00000035157 RLG00000035906
rosa_multiflora	Rmu_co8282815.1_g000001 Rmu_co8380495.1_g000001 Rmu_co8381111.1_g000001 Rmu_co8460513.1_g000001 Rmu_co8481947.1_g000001 Rmu_co8487937.1_g000001 Rmu_sc0000151.1_g000017 Rmu_sc0001427.1_g000003 Rmu_sc0001427.1_g000006 Rmu_sc0002611.1_g000008 Rmu_sc0003887.1_g000018 Rmu_sc0003887.1_g000019 Rmu_sc0003887.1_g000021 Rmu_sc0004119.1_g000004 Rmu_sc0004329.1_g000003 Rmu_sc0004485.1_g000024 Rmu_sc0005290.1_g000001 Rmu_sc0005609.1_g000006 Rmu_sc0006187.1_g000018 Rmu_sc0006218.1_g000032 Rmu_sc0006218.1_g000033 Rmu_sc0007150.1_g000003 Rmu_sc0007154.1_g000004 Rmu_sc0007154.1_g000005 Rmu_sc0007154.1_g000007 Rmu_sc0008314.1_g000012 Rmu_sc0010073.1_g000023 Rmu_sc0010073.1_g000025 Rmu_sc0011216.1_g000008 Rmu_sc0012445.1_g000005 Rmu_sc0013571.1_g000002 Rmu_sc0018648.1_g000002 Rmu_sc0020961.1_g000002 Rmu_sc0020961.1_g000003 Rmu_sc0023710.1_g000001 Rmu_sc0031310.1_g000008 Rmu_sc0033940.1_g000001 Rmu_sc0035493.1_g000001 Rmu_sc0039285.1_g000001
rosa_roxburghii	Rroxscaffold_1G00014000 Rroxscaffold_1G00014020 Rroxscaffold_2G00082760 Rroxscaffold_2G00085090 Rroxscaffold_2G00085100 Rroxscaffold_2G00085140 Rroxscaffold_2G00086670 Rroxscaffold_2G00086680 Rroxscaffold_2G00098190 Rroxscaffold_2G00099270 Rroxscaffold_3G00227460 Rroxscaffold_3G00258190 Rroxscaffold_3G00259780 Rroxscaffold_6G00402940 Rroxscaffold_6G00410200 Rroxscaffold_6G00410210 Rroxscaffold_7G00184320
rosa_rugosa	Rorug02G0416100 Rorug02G0416200 Rorug02G0520900 Rorug02G0521200 Rorug02G0521300 Rorug02G0534600 Rorug03G0116300 Rorug03G0162900 Rorug03G0162900 Rorug04G0241400 Rorug05G0380900 Rorug07G0043800
rosa_samantha	Rh1AG115300 Rh2BG483700 Rh2BG509900 Rh2BG515700 Rh2BG515800 Rh2BG586500 Rh2BG586600 Rh2BG586700 Rh2BG598800 Rh2BG598900 Rh2BG599100 Rh2BG618400 Rh2BG630500 Rh2CG457400 Rh2CG484900 Rh3AG165300 Rh3AG212900 Rh3AG213300 Rh3BG145800 Rh3BG146100 Rh3BG235300 Rh3BG246500 Rh3BG247000 Rh3BG247100 Rh3CG240300 Rh3CG240800 Rh3CG240900 Rh3CG259600 Rh3DG147000 Rh3DG184800 Rh3DG184900 Rh3DG185000 Rh3DG239500 Rh3DG240100 Rh3DG240200 Rh3DG255800 Rh5BG458500 Rh5CG480400 Rh7BG170400 Rh7BG407900 Rh7CG176900
rosa_wichuraiana	Rw2G038990 Rw2G041550 Rw2G047660 Rw2G048940 Rw4G026370 Rw6G008730 Rw7G014600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	219
AccI	GTMKAC	1 cut(s)	424
AccIII	TCCGGA	1 cut(s)	724
AclWI	GGATC	2 cut(s)	270, 283
AcuI	CTGAAG	2 cut(s)	363, 792
AfaI	GTAC	2 cut(s)	384, 600
AfiI	CCNNNNNNNGG	2 cut(s)	102, 305
AgsI	TTSAA	3 cut(s)	476, 782, 790
AjnI	CCWGG	1 cut(s)	614
AluBI	AGCT	6 cut(s)	165, 343, 350, 502, 584, 793
AluI	AGCT	6 cut(s)	165, 343, 350, 502, 584, 793
Alw21I	GWGCWC	1 cut(s)	345
Alw26I	GTCTC	1 cut(s)	66
AlwI	GGATC	2 cut(s)	270, 283
Aor13HI	TCCGGA	1 cut(s)	724
ApeKI	GCWGC	3 cut(s)	350, 509, 619
Asp700I	GAANNNNTTC	1 cut(s)	777
AspLEI	GCGC	1 cut(s)	220
AspS9I	GGNCC	2 cut(s)	444, 463
AvaII	GGWCC	2 cut(s)	444, 463
BamHI	GGATCC	1 cut(s)	275
BanII	GRGCYC	1 cut(s)	345
BauI	CACGAG	1 cut(s)	144
BbsI	GAAGAC	1 cut(s)	778
Bbv12I	GWGCWC	1 cut(s)	345
BbvI	GCAGC	3 cut(s)	337, 496, 606
BccI	CCATC	6 cut(s)	260, 308, 334, 365, 403, 488
BceAI	ACGGC	1 cut(s)	45
BciT130I	CCWGG	1 cut(s)	616
BclI	TGATCA	1 cut(s)	562
BcoDI	GTCTC	1 cut(s)	66
BfmI	CTRYAG	2 cut(s)	421, 480
BisI	GCNGC	3 cut(s)	351, 510, 620
BlsI	GCNGC	3 cut(s)	352, 511, 621
Bme1390I	CCNGG	1 cut(s)	616
Bme18I	GGWCC	2 cut(s)	444, 463
BmgT120I	GGNCC	2 cut(s)	444, 463
BmiI	GGNNCC	2 cut(s)	277, 446
BmrFI	CCNGG	1 cut(s)	616
BmrI	ACTGGG	1 cut(s)	523
BmsI	GCATC	2 cut(s)	205, 309
BmuI	ACTGGG	1 cut(s)	523
BpiI	GAAGAC	1 cut(s)	778
Bsa29I	ATCGAT	1 cut(s)	492
BsaAI	YACGTR	1 cut(s)	408
BsaJI	CCNNGG	2 cut(s)	128, 614
BsaWI	WCCGGW	1 cut(s)	724
Bsc4I	CCNNNNNNNGG	2 cut(s)	102, 305
Bse1I	ACTGG	2 cut(s)	277, 529
BseAI	TCCGGA	1 cut(s)	724
BseBI	CCWGG	1 cut(s)	616
BseCI	ATCGAT	1 cut(s)	492
BseDI	CCNNGG	2 cut(s)	128, 614
BseGI	GGATG	1 cut(s)	395
BseLI	CCNNNNNNNGG	2 cut(s)	102, 305
BseMII	CTCAG	1 cut(s)	66
BseNI	ACTGG	2 cut(s)	277, 529
BseRI	GAGGAG	2 cut(s)	108, 473
BseXI	GCAGC	3 cut(s)	337, 496, 606
BseYI	CCCAGC	1 cut(s)	412
BshVI	ATCGAT	1 cut(s)	492
BsiHKAI	GWGCWC	1 cut(s)	345
BsiSI	CCGG	1 cut(s)	725
BslFI	GGGAC	2 cut(s)	283, 511
BslI	CCNNNNNNNGG	2 cut(s)	102, 305
BsmAI	GTCTC	1 cut(s)	66
BsmFI	GGGAC	2 cut(s)	283, 511
Bsp1286I	GDGCHC	1 cut(s)	345
Bsp13I	TCCGGA	1 cut(s)	724
Bsp143I	GATC	4 cut(s)	148, 275, 562, 625
Bsp19I	CCATGG	1 cut(s)	128
BspCNI	CTCAG	1 cut(s)	65
BspDI	ATCGAT	1 cut(s)	492
BspEI	TCCGGA	1 cut(s)	724
BspLI	GGNNCC	2 cut(s)	277, 446
BspPI	GGATC	2 cut(s)	270, 283
BsrI	ACTGG	2 cut(s)	277, 529
BssECI	CCNNGG	2 cut(s)	128, 614
BssMI	GATC	4 cut(s)	148, 275, 562, 625
BssSI	CACGAG	1 cut(s)	144
BssT1I	CCWWGG	1 cut(s)	128
Bst2BI	CACGAG	1 cut(s)	144
Bst2UI	CCWGG	1 cut(s)	616
Bst4CI	ACNGT	3 cut(s)	105, 170, 739
Bst6I	CTCTTC	1 cut(s)	382
BstBAI	YACGTR	1 cut(s)	408
BstDEI	CTNAG	1 cut(s)	52
BstDSI	CCRYGG	1 cut(s)	128
BstF5I	GGATG	1 cut(s)	395
BstHHI	GCGC	1 cut(s)	220
BstKTI	GATC	4 cut(s)	151, 278, 565, 628
BstMAI	GTCTC	1 cut(s)	66
BstMBI	GATC	4 cut(s)	148, 275, 562, 625
BstMWI	GCNNNNNNNGC	2 cut(s)	57, 817
BstNI	CCWGG	1 cut(s)	616
BstSCI	CCNGG	1 cut(s)	614
BstSFI	CTRYAG	2 cut(s)	421, 480
BstV1I	GCAGC	3 cut(s)	337, 496, 606
BstV2I	GAAGAC	1 cut(s)	778
BstX2I	RGATCY	1 cut(s)	275
BstYI	RGATCY	1 cut(s)	275
Bsu15I	ATCGAT	1 cut(s)	492
BsuTUI	ATCGAT	1 cut(s)	492
BtgI	CCRYGG	1 cut(s)	128
BtsCI	GGATG	1 cut(s)	395
BtsIMutI	CAGTG	1 cut(s)	429
CfoI	GCGC	1 cut(s)	220
Cfr13I	GGNCC	2 cut(s)	444, 463
ClaI	ATCGAT	1 cut(s)	492
Csp6I	GTAC	2 cut(s)	383, 599
CviAII	CATG	7 cut(s)	66, 129, 221, 330, 338, 441, 822
CviQI	GTAC	2 cut(s)	383, 599
DdeI	CTNAG	1 cut(s)	52
DpnI	GATC	4 cut(s)	150, 277, 564, 627
DpnII	GATC	4 cut(s)	148, 275, 562, 625
Eam1104I	CTCTTC	1 cut(s)	382
EarI	CTCTTC	1 cut(s)	382
Ecl136II	GAGCTC	1 cut(s)	343
Eco130I	CCWWGG	1 cut(s)	128
Eco24I	GRGCYC	1 cut(s)	345
Eco47I	GGWCC	2 cut(s)	444, 463
Eco53kI	GAGCTC	1 cut(s)	343
Eco57I	CTGAAG	2 cut(s)	363, 792
EcoICRI	GAGCTC	1 cut(s)	343
EcoO109I	RGGNCCY	1 cut(s)	463
EcoRII	CCWGG	1 cut(s)	614
EcoT14I	CCWWGG	1 cut(s)	128
EcoT38I	GRGCYC	1 cut(s)	345
ErhI	CCWWGG	1 cut(s)	128
FaeI	CATG	7 cut(s)	69, 132, 224, 333, 341, 444, 825
FaqI	GGGAC	2 cut(s)	283, 511
FatI	CATG	7 cut(s)	65, 128, 220, 329, 337, 440, 821
FbaI	TGATCA	1 cut(s)	562
FblI	GTMKAC	1 cut(s)	424
Fnu4HI	GCNGC	3 cut(s)	351, 510, 620
FokI	GGATG	1 cut(s)	382
FriOI	GRGCYC	1 cut(s)	345
Fsp4HI	GCNGC	3 cut(s)	351, 510, 620
FspAI	RTGCGCAY	1 cut(s)	219
FspI	TGCGCA	1 cut(s)	219
GlaI	GCGC	1 cut(s)	219
GluI	GCNGC	3 cut(s)	351, 510, 620
GsaI	CCCAGC	1 cut(s)	416
HapII	CCGG	1 cut(s)	725
HhaI	GCGC	1 cut(s)	220
Hin1II	CATG	7 cut(s)	69, 132, 224, 333, 341, 444, 825
Hin6I	GCGC	1 cut(s)	218
HinP1I	GCGC	1 cut(s)	218
HinfI	GANTC	4 cut(s)	74, 295, 476, 742
HpaII	CCGG	1 cut(s)	725
Hpy166II	GTNNAC	3 cut(s)	365, 425, 758
Hpy188III	TCNNGA	3 cut(s)	146, 629, 725
Hpy8I	GTNNAC	3 cut(s)	365, 425, 758
HpyAV	CCTTC	1 cut(s)	582
HpyCH4III	ACNGT	3 cut(s)	105, 170, 739
HpyCH4IV	ACGT	1 cut(s)	407
HpyCH4V	TGCA	4 cut(s)	4, 333, 512, 680
HpyF10VI	GCNNNNNNNGC	2 cut(s)	57, 817
HpyF3I	CTNAG	1 cut(s)	52
HpySE526I	ACGT	1 cut(s)	407
Hsp92II	CATG	7 cut(s)	69, 132, 224, 333, 341, 444, 825
HspAI	GCGC	1 cut(s)	218
Kpn2I	TCCGGA	1 cut(s)	724
Ksp22I	TGATCA	1 cut(s)	562
Kzo9I	GATC	4 cut(s)	148, 275, 562, 625
LmnI	GCTCC	1 cut(s)	121
Lsp1109I	GCAGC	3 cut(s)	337, 496, 606
LweI	GCATC	2 cut(s)	205, 309
MaeII	ACGT	1 cut(s)	407
MalI	GATC	4 cut(s)	150, 277, 564, 627
MboI	GATC	4 cut(s)	148, 275, 562, 625
MboII	GAAGA	2 cut(s)	369, 778
MfeI	CAATTG	1 cut(s)	240
MflI	RGATCY	1 cut(s)	275
MhlI	GDGCHC	1 cut(s)	345
MluCI	AATT	7 cut(s)	90, 154, 194, 240, 282, 450, 763
MlyI	GAGTC	1 cut(s)	68
MnlI	CCTC	9 cut(s)	129, 238, 364, 385, 410, 451, 454, 476, 627
MroI	TCCGGA	1 cut(s)	724
MroXI	GAANNNNTTC	1 cut(s)	777
MseI	TTAA	2 cut(s)	161, 197
MspA1I	CMGCKG	1 cut(s)	350
MspI	CCGG	1 cut(s)	725
MspR9I	CCNGG	1 cut(s)	616
MunI	CAATTG	1 cut(s)	240
MvaI	CCWGG	1 cut(s)	616
MwoI	GCNNNNNNNGC	2 cut(s)	57, 817
NcoI	CCATGG	1 cut(s)	128
NdeII	GATC	4 cut(s)	148, 275, 562, 625
NlaIII	CATG	7 cut(s)	69, 132, 224, 333, 341, 444, 825
NlaIV	GGNNCC	2 cut(s)	277, 446
NmeAIII	GCCGAG	2 cut(s)	231, 338
NsbI	TGCGCA	1 cut(s)	219
PdmI	GAANNNNTTC	1 cut(s)	777
PfeI	GAWTC	3 cut(s)	295, 476, 742
PkrI	GCNGC	3 cut(s)	352, 511, 621
PleI	GAGTC	1 cut(s)	68
PpsI	GAGTC	1 cut(s)	68
Ppu21I	YACGTR	1 cut(s)	408
PpuMI	RGGWCCY	1 cut(s)	463
Psp124BI	GAGCTC	1 cut(s)	345
Psp5II	RGGWCCY	1 cut(s)	463
Psp6I	CCWGG	1 cut(s)	614
PspFI	CCCAGC	1 cut(s)	412
PspGI	CCWGG	1 cut(s)	614
PspN4I	GGNNCC	2 cut(s)	277, 446
PspPI	GGNCC	2 cut(s)	444, 463
PspPPI	RGGWCCY	1 cut(s)	463
PsuI	RGATCY	1 cut(s)	275
PvuII	CAGCTG	1 cut(s)	350
RsaI	GTAC	2 cut(s)	384, 600
RsaNI	GTAC	2 cut(s)	383, 599
SacI	GAGCTC	1 cut(s)	345
SaqAI	TTAA	2 cut(s)	161, 197
SatI	GCNGC	3 cut(s)	351, 510, 620
Sau3AI	GATC	4 cut(s)	148, 275, 562, 625
Sau96I	GGNCC	2 cut(s)	444, 463
SchI	GAGTC	1 cut(s)	68
ScrFI	CCNGG	1 cut(s)	616
SduI	GDGCHC	1 cut(s)	345
SfaNI	GCATC	2 cut(s)	205, 309
SfcI	CTRYAG	2 cut(s)	421, 480
SinI	GGWCC	2 cut(s)	444, 463
Sse9I	AATT	7 cut(s)	90, 154, 194, 240, 282, 450, 763
SstI	GAGCTC	1 cut(s)	345
StyD4I	CCNGG	1 cut(s)	614
StyI	CCWWGG	1 cut(s)	128
TaaI	ACNGT	3 cut(s)	105, 170, 739
TaiI	ACGT	1 cut(s)	410
TaqI	TCGA	4 cut(s)	33, 492, 586, 639
TasI	AATT	7 cut(s)	90, 154, 194, 240, 282, 450, 763
TatI	WGTACW	1 cut(s)	598
TfiI	GAWTC	3 cut(s)	295, 476, 742
Tru1I	TTAA	2 cut(s)	161, 197
Tru9I	TTAA	2 cut(s)	161, 197
TscAI	CASTG	1 cut(s)	436
TseI	GCWGC	3 cut(s)	350, 509, 619
TspDTI	ATGAA	3 cut(s)	54, 240, 478
TspRI	CASTG	1 cut(s)	436
VpaK11BI	GGWCC	2 cut(s)	444, 463
XmiI	GTMKAC	1 cut(s)	424
XmnI	GAANNNNTTC	1 cut(s)	777

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.