Rmu_sc0008314.1_g000012

Glycine-rich domain-containing protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008314.1
OG0000142
Physical Location & Seq
Forward (+)
38629 .. 39198
570 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008314.1_g000012.1.cds

Sequence Viewer

Length: 495 bp
atgacagctattgaaatctccactgagtatccctatggaaaagcagtggctttgctcaatgtgacatcgggattcctagagatcaaggaagagtggctgttattgccttggatcacatcagctttcatactttcggatgttatgtccaatgacggctatgatggtttcagaaactaccagtggagagaagcaatcagaatttattactcaacagacgttgttaacattaagagcaatgagaaagaaaaaagagccaatttgttcactgcctcggaaaaaatgaaacttgagggggataatgagagtttaaacatatgggaggccctggaaaaaggtggctcatgtggcctttatgaagctggctttagcccctacaatatgacaaaaggtagccattgcggaagaagatgtggcagctgtggcggtggttgtggccagtgccggggtggtcagtgtgggggaggcaaatgcagttctagttgcggtagcagatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GRDP-like

Protein Analysis

164

Amino Acids

17.97

Weight (kDa)

5.91

Isoelectric Point (pI)

50.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000142)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13532 FvH4_2g28870 FvH4_3g30930 FvH4_3g37281 FvH4_3g37300 FvH4_3g37301 FvH4_3g37301 FvH4_4g23711 FvH4_5g02330 FvH4_6g16960 FvH4_6g16971 FvH4_6g21291 FvH4_6g21331 FvH4_6g22212 FvH4_6g22332 FvH4_6g36920 FvH4_6g37552 FvH4_6g37591 FvH4_6g39721 FvH4_6g46020 FvH4_6g47001 FvH4_6g47002 FvH4_6g47130 FvH4_6g47140 FvH4_6g47161 FvH4_6g47170 FvH4_6g47190 FvH4_6g49120 FvH4_6g49280 FvH4_6g49281 FvH4_6g49640 FvH4_6g49640
malus_domestica MD03G1085600.v1.1 MD09G1027500.v1.1 MD09G1050100.v1.1
prunus_persica Prupe.1G004300_v2.0.a1 Prupe.1G016300_v2.0.a1 Prupe.1G019300_v2.0.a1 Prupe.3G239100_v2.0.a1 Prupe.3G291200_v2.0.a1
pyrus_communis pycom08g02840 pycom08g02860 pycom08g02870
rosa_chinensis RchiOBHm_Chr2g0153831 RchiOBHm_Chr2g0166171 RchiOBHm_Chr2g0166201 RchiOBHm_Chr3g0476221 RchiOBHm_Chr4g0430971 RchiOBHm_Chr5g0067081 RchiOBHm_Chr7g0197821
rosa_laevigata RLG00000001284 RLG00000006996 RLG00000012710 RLG00000019299 RLG00000020285 RLG00000020444 RLG00000020466 RLG00000020591 RLG00000020665 RLG00000020730 RLG00000020732 RLG00000021449 RLG00000021592 RLG00000021593 RLG00000021594 RLG00000021596 RLG00000021597 RLG00000021801 RLG00000023534 RLG00000023538 RLG00000023693 RLG00000023694 RLG00000023699 RLG00000024196 RLG00000024214 RLG00000024220 RLG00000024244 RLG00000024608 RLG00000024612 RLG00000035157 RLG00000035906
rosa_multiflora Rmu_co8282815.1_g000001 Rmu_co8380495.1_g000001 Rmu_co8381111.1_g000001 Rmu_co8460513.1_g000001 Rmu_co8481947.1_g000001 Rmu_co8487937.1_g000001 Rmu_sc0000151.1_g000017 Rmu_sc0001427.1_g000003 Rmu_sc0001427.1_g000006 Rmu_sc0002611.1_g000008 Rmu_sc0003887.1_g000018 Rmu_sc0003887.1_g000019 Rmu_sc0003887.1_g000021 Rmu_sc0004119.1_g000004 Rmu_sc0004329.1_g000003 Rmu_sc0004485.1_g000024 Rmu_sc0005290.1_g000001 Rmu_sc0005609.1_g000006 Rmu_sc0006187.1_g000018 Rmu_sc0006218.1_g000032 Rmu_sc0006218.1_g000033 Rmu_sc0007150.1_g000003 Rmu_sc0007154.1_g000004 Rmu_sc0007154.1_g000005 Rmu_sc0007154.1_g000007 Rmu_sc0008314.1_g000012 Rmu_sc0010073.1_g000023 Rmu_sc0010073.1_g000025 Rmu_sc0011216.1_g000008 Rmu_sc0012445.1_g000005 Rmu_sc0013571.1_g000002 Rmu_sc0018648.1_g000002 Rmu_sc0020961.1_g000002 Rmu_sc0020961.1_g000003 Rmu_sc0023710.1_g000001 Rmu_sc0031310.1_g000008 Rmu_sc0033940.1_g000001 Rmu_sc0035493.1_g000001 Rmu_sc0039285.1_g000001
rosa_roxburghii Rroxscaffold_1G00014000 Rroxscaffold_1G00014020 Rroxscaffold_2G00082760 Rroxscaffold_2G00085090 Rroxscaffold_2G00085100 Rroxscaffold_2G00085140 Rroxscaffold_2G00086670 Rroxscaffold_2G00086680 Rroxscaffold_2G00098190 Rroxscaffold_2G00099270 Rroxscaffold_3G00227460 Rroxscaffold_3G00258190 Rroxscaffold_3G00259780 Rroxscaffold_6G00402940 Rroxscaffold_6G00410200 Rroxscaffold_6G00410210 Rroxscaffold_7G00184320
rosa_rugosa Rorug02G0416100 Rorug02G0416200 Rorug02G0520900 Rorug02G0521200 Rorug02G0521300 Rorug02G0534600 Rorug03G0116300 Rorug03G0162900 Rorug03G0162900 Rorug04G0241400 Rorug05G0380900 Rorug07G0043800
rosa_samantha Rh1AG115300 Rh2BG483700 Rh2BG509900 Rh2BG515700 Rh2BG515800 Rh2BG586500 Rh2BG586600 Rh2BG586700 Rh2BG598800 Rh2BG598900 Rh2BG599100 Rh2BG618400 Rh2BG630500 Rh2CG457400 Rh2CG484900 Rh3AG165300 Rh3AG212900 Rh3AG213300 Rh3BG145800 Rh3BG146100 Rh3BG235300 Rh3BG246500 Rh3BG247000 Rh3BG247100 Rh3CG240300 Rh3CG240800 Rh3CG240900 Rh3CG259600 Rh3DG147000 Rh3DG184800 Rh3DG184900 Rh3DG185000 Rh3DG239500 Rh3DG240100 Rh3DG240200 Rh3DG255800 Rh5BG458500 Rh5CG480400 Rh7BG170400 Rh7BG407900 Rh7CG176900
rosa_wichuraiana Rw2G038990 Rw2G041550 Rw2G047660 Rw2G048940 Rw4G026370 Rw6G008730 Rw7G014600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 399, 423, 483
AclWI GGATC 1 cut(s) 119
AcoI YGGCCR 1 cut(s) 433
AcsI RAATTY 1 cut(s) 198
AfiI CCNNNNNNNGG 1 cut(s) 442
AgsI TTSAA 1 cut(s) 14
AjnI CCWGG 1 cut(s) 324
AluBI AGCT 4 cut(s) 8, 122, 359, 417
AluI AGCT 4 cut(s) 8, 122, 359, 417
AlwI GGATC 1 cut(s) 119
AoxI GGCC 3 cut(s) 321, 346, 433
ApeKI GCWGC 1 cut(s) 414
ApoI RAATTY 1 cut(s) 198
AspS9I GGNCC 1 cut(s) 322
AsuC2I CCSGG 1 cut(s) 443
BalI TGGCCA 1 cut(s) 435
BbvI GCAGC 1 cut(s) 426
BccI CCATC 1 cut(s) 155
BceAI ACGGC 1 cut(s) 169
BciT130I CCWGG 1 cut(s) 326
BciVI GTATCC 1 cut(s) 39
BcnI CCSGG 1 cut(s) 443
BfaI CTAG 2 cut(s) 77, 477
BfuI GTATCC 1 cut(s) 39
BisI GCNGC 1 cut(s) 415
BlsI GCNGC 1 cut(s) 416
Bme1390I CCNGG 2 cut(s) 326, 443
BmgT120I GGNCC 1 cut(s) 322
BmrFI CCNGG 2 cut(s) 326, 443
BpuEI CTTGAG 1 cut(s) 308
BpuMI CCSGG 1 cut(s) 443
BsaJI CCNNGG 4 cut(s) 107, 270, 324, 442
Bsc4I CCNNNNNNNGG 1 cut(s) 442
Bse1I ACTGG 2 cut(s) 178, 436
Bse3DI GCAATG 2 cut(s) 241, 394
BseBI CCWGG 1 cut(s) 326
BseDI CCNNGG 4 cut(s) 107, 270, 324, 442
BseGI GGATG 1 cut(s) 142
BseLI CCNNNNNNNGG 1 cut(s) 442
BseMI GCAATG 2 cut(s) 241, 394
BseMII CTCAG 1 cut(s) 15
BseNI ACTGG 2 cut(s) 178, 436
BseXI GCAGC 1 cut(s) 426
BshFI GGCC 3 cut(s) 323, 348, 435
BsiSI CCGG 1 cut(s) 442
BslI CCNNNNNNNGG 1 cut(s) 442
BsnI GGCC 3 cut(s) 323, 348, 435
Bsp143I GATC 2 cut(s) 81, 111
BspACI CCGC 3 cut(s) 399, 423, 483
BspANI GGCC 3 cut(s) 323, 348, 435
BspCNI CTCAG 1 cut(s) 16
BspPI GGATC 1 cut(s) 119
BsrDI GCAATG 2 cut(s) 241, 394
BsrI ACTGG 2 cut(s) 178, 436
BssECI CCNNGG 4 cut(s) 107, 270, 324, 442
BssMI GATC 2 cut(s) 81, 111
BssT1I CCWWGG 1 cut(s) 107
Bst2UI CCWGG 1 cut(s) 326
Bst6I CTCTTC 1 cut(s) 84
BstC8I GCNNGC 1 cut(s) 361
BstDEI CTNAG 1 cut(s) 24
BstF5I GGATG 1 cut(s) 142
BstKTI GATC 2 cut(s) 84, 114
BstMBI GATC 2 cut(s) 81, 111
BstMWI GCNNNNNNNGC 3 cut(s) 103, 345, 420
BstNI CCWGG 1 cut(s) 326
BstSCI CCNGG 2 cut(s) 324, 441
BstV1I GCAGC 1 cut(s) 426
BsuI GTATCC 1 cut(s) 39
BsuRI GGCC 3 cut(s) 323, 348, 435
BtsCI GGATG 1 cut(s) 142
BtsI GCAGTG 2 cut(s) 51, 264
BtsIMutI CAGTG 6 cut(s) 21, 51, 185, 264, 443, 458
Cac8I GCNNGC 1 cut(s) 361
Cfr13I GGNCC 1 cut(s) 322
CviAII CATG 1 cut(s) 342
DdeI CTNAG 1 cut(s) 24
DpnI GATC 2 cut(s) 83, 113
DpnII GATC 2 cut(s) 81, 111
DraI TTTAAA 1 cut(s) 309
EaeI YGGCCR 1 cut(s) 433
Eam1104I CTCTTC 1 cut(s) 84
EarI CTCTTC 1 cut(s) 84
Eco130I CCWWGG 1 cut(s) 107
EcoO109I RGGNCCY 1 cut(s) 322
EcoRII CCWGG 1 cut(s) 324
EcoT14I CCWWGG 1 cut(s) 107
ErhI CCWWGG 1 cut(s) 107
FaeI CATG 1 cut(s) 345
FaiI YATR 9 cut(s) 36, 128, 143, 159, 314, 316, 343, 354, 380
FatI CATG 1 cut(s) 341
FauNDI CATATG 1 cut(s) 314
Fnu4HI GCNGC 1 cut(s) 415
FokI GGATG 1 cut(s) 149
Fsp4HI GCNGC 1 cut(s) 415
FspBI CTAG 2 cut(s) 77, 477
GluI GCNGC 1 cut(s) 415
HaeIII GGCC 3 cut(s) 323, 348, 435
HapII CCGG 1 cut(s) 442
Hin1II CATG 1 cut(s) 345
HincII GTYRAC 1 cut(s) 223
HindII GTYRAC 1 cut(s) 223
HinfI GANTC 1 cut(s) 72
HpaI GTTAAC 1 cut(s) 223
HpaII CCGG 1 cut(s) 442
Hpy166II GTNNAC 2 cut(s) 223, 264
Hpy188I TCNGA 4 cut(s) 136, 170, 197, 274
Hpy188III TCNNGA 1 cut(s) 69
Hpy8I GTNNAC 2 cut(s) 223, 264
HpyCH4IV ACGT 1 cut(s) 216
HpyCH4V TGCA 1 cut(s) 471
HpyF10VI GCNNNNNNNGC 3 cut(s) 103, 345, 420
HpyF3I CTNAG 1 cut(s) 24
HpySE526I ACGT 1 cut(s) 216
Hsp92II CATG 1 cut(s) 345
KspAI GTTAAC 1 cut(s) 223
Kzo9I GATC 2 cut(s) 81, 111
LpnPI CCDG 6 cut(s) 191, 311, 338, 345, 449, 455
Lsp1109I GCAGC 1 cut(s) 426
MaeI CTAG 2 cut(s) 77, 477
MaeII ACGT 1 cut(s) 216
MaeIII GTNAC 1 cut(s) 61
MalI GATC 2 cut(s) 83, 113
MboI GATC 2 cut(s) 81, 111
MboII GAAGA 3 cut(s) 101, 414, 417
MlsI TGGCCA 1 cut(s) 435
MluCI AATT 2 cut(s) 198, 256
MluNI TGGCCA 1 cut(s) 435
MnlI CCTC 4 cut(s) 280, 283, 313, 455
Mox20I TGGCCA 1 cut(s) 435
MscI TGGCCA 1 cut(s) 435
MseI TTAA 3 cut(s) 222, 228, 308
Msp20I TGGCCA 1 cut(s) 435
MspA1I CMGCKG 1 cut(s) 417
MspI CCGG 1 cut(s) 442
MspR9I CCNGG 2 cut(s) 326, 443
MssI GTTTAAAC 1 cut(s) 309
MvaI CCWGG 1 cut(s) 326
MwoI GCNNNNNNNGC 3 cut(s) 103, 345, 420
NciI CCSGG 1 cut(s) 443
NdeI CATATG 1 cut(s) 314
NdeII GATC 2 cut(s) 81, 111
NlaIII CATG 1 cut(s) 345
NmuCI GTSAC 1 cut(s) 61
PfeI GAWTC 1 cut(s) 72
PkrI GCNGC 1 cut(s) 416
PmeI GTTTAAAC 1 cut(s) 309
Psp6I CCWGG 1 cut(s) 324
PspGI CCWGG 1 cut(s) 324
PspPI GGNCC 1 cut(s) 322
PvuII CAGCTG 1 cut(s) 417
SaqAI TTAA 3 cut(s) 222, 228, 308
SatI GCNGC 1 cut(s) 415
Sau3AI GATC 2 cut(s) 81, 111
Sau96I GGNCC 1 cut(s) 322
ScrFI CCNGG 2 cut(s) 326, 443
SetI ASST 7 cut(s) 10, 124, 219, 337, 361, 391, 419
SmlI CTYRAG 1 cut(s) 287
SmoI CTYRAG 1 cut(s) 287
Sse9I AATT 2 cut(s) 198, 256
SsiI CCGC 3 cut(s) 399, 423, 483
SspMI CTAG 2 cut(s) 77, 477
StyD4I CCNGG 2 cut(s) 324, 441
StyI CCWWGG 1 cut(s) 107
TaiI ACGT 1 cut(s) 219
TasI AATT 2 cut(s) 198, 256
TfiI GAWTC 1 cut(s) 72
Tru1I TTAA 3 cut(s) 222, 228, 308
Tru9I TTAA 3 cut(s) 222, 228, 308
TscAI CASTG 6 cut(s) 28, 51, 185, 271, 443, 458
TseFI GTSAC 1 cut(s) 61
TseI GCWGC 1 cut(s) 414
Tsp45I GTSAC 1 cut(s) 61
TspDTI ATGAA 3 cut(s) 115, 296, 369
TspRI CASTG 6 cut(s) 28, 51, 185, 271, 443, 458
XapI RAATTY 1 cut(s) 198
XcmI CCANNNNNNNNNTGG 1 cut(s) 443
XspI CTAG 2 cut(s) 77, 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.