Rroxscaffold_2G00085090

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
7486071 .. 7487231
1161 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00085090.1

Sequence Viewer

Length: 873 bp
ATGTCAAAGATGACGGAGACGATAGGGAAGAAGGAGATCAGGTGGTCACAAGGACTCCCAGATGATATCTTGCAATTGATAGCACAACGACTATGCATATCAGATTACCAAGTGTTTCGCCAAGTATGCCCTTATTGGCGAGCCGCTGTGGATAGAGGTATTGCCACCGGGTCTTGCCCTCCGGCCTGCTCCTCAACTCCCATGGCTTTTGCTCTTCACCTGCCATGGCTTGGCACGGTCTTTAGATTCTCTCCATGCCTTCTACATCAAACACCAACACTCCTCGGGTCCAGCATATTTCAGATCAGAAATTCGCCAACTGATACATCATGGACCCTCATTGAGACCATAGATGGCCACATAGTTTATGATATAGAAGTAATTGATCAGAAATTATATGTTGGATGTATGTACGGGCCGGTTTTACTGGAATTTGACATACTCTCTGAAGATGCCAATGTCACTAGGGCCAAAATAAATTGTCAGCCGTATTTTTCTGTTTCGAAATGGATACGGTACCCTCGTCTAGCAAAAGATACTGCATCCAAGGAATTGTTTATAATTCTAAGTCTAAGTTGGATGAGAAAAGGATTCCGAGTATATAAGATGGAGAGCAATACTGGAGGTGAGCCATCGTGCAAGGAGGTTACTGACCTTGGTGAGCGAACATTGTTTCTGAGCAATAAAAGCAATAAGGTCATCAATGACAAGACACTTGGGAAAAACTGCATCTATTGTGCTTACGATCTTGAAGATGGTTATGGGCATGGGTTGTATTCCTTGGCAGATAGGAGCATCGAACGAGTTTACTTTCCTATGGGTTACTCGTCTGCCGGCTGTCAAACTATTTGGTTCACACCGCATCCGTGGTAG

Protein Analysis

290

Amino Acids

32.94

Weight (kDa)

7.49

Isoelectric Point (pI)

42.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 19 - 51 8.3e-07 F-box domain
Beta-prop_KIB1-4 PF03478 103 - 259 8.2e-12 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000142)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13532 FvH4_2g28870 FvH4_3g30930 FvH4_3g37281 FvH4_3g37300 FvH4_3g37301 FvH4_3g37301 FvH4_4g23711 FvH4_5g02330 FvH4_6g16960 FvH4_6g16971 FvH4_6g21291 FvH4_6g21331 FvH4_6g22212 FvH4_6g22332 FvH4_6g36920 FvH4_6g37552 FvH4_6g37591 FvH4_6g39721 FvH4_6g46020 FvH4_6g47001 FvH4_6g47002 FvH4_6g47130 FvH4_6g47140 FvH4_6g47161 FvH4_6g47170 FvH4_6g47190 FvH4_6g49120 FvH4_6g49280 FvH4_6g49281 FvH4_6g49640 FvH4_6g49640
malus_domestica MD03G1085600.v1.1 MD09G1027500.v1.1 MD09G1050100.v1.1
prunus_persica Prupe.1G004300_v2.0.a1 Prupe.1G016300_v2.0.a1 Prupe.1G019300_v2.0.a1 Prupe.3G239100_v2.0.a1 Prupe.3G291200_v2.0.a1
pyrus_communis pycom08g02840 pycom08g02860 pycom08g02870
rosa_chinensis RchiOBHm_Chr2g0153831 RchiOBHm_Chr2g0166171 RchiOBHm_Chr2g0166201 RchiOBHm_Chr3g0476221 RchiOBHm_Chr4g0430971 RchiOBHm_Chr5g0067081 RchiOBHm_Chr7g0197821
rosa_laevigata RLG00000001284 RLG00000006996 RLG00000012710 RLG00000019299 RLG00000020285 RLG00000020444 RLG00000020466 RLG00000020591 RLG00000020665 RLG00000020730 RLG00000020732 RLG00000021449 RLG00000021592 RLG00000021593 RLG00000021594 RLG00000021596 RLG00000021597 RLG00000021801 RLG00000023534 RLG00000023538 RLG00000023693 RLG00000023694 RLG00000023699 RLG00000024196 RLG00000024214 RLG00000024220 RLG00000024244 RLG00000024608 RLG00000024612 RLG00000035157 RLG00000035906
rosa_multiflora Rmu_co8282815.1_g000001 Rmu_co8380495.1_g000001 Rmu_co8381111.1_g000001 Rmu_co8460513.1_g000001 Rmu_co8481947.1_g000001 Rmu_co8487937.1_g000001 Rmu_sc0000151.1_g000017 Rmu_sc0001427.1_g000003 Rmu_sc0001427.1_g000006 Rmu_sc0002611.1_g000008 Rmu_sc0003887.1_g000018 Rmu_sc0003887.1_g000019 Rmu_sc0003887.1_g000021 Rmu_sc0004119.1_g000004 Rmu_sc0004329.1_g000003 Rmu_sc0004485.1_g000024 Rmu_sc0005290.1_g000001 Rmu_sc0005609.1_g000006 Rmu_sc0006187.1_g000018 Rmu_sc0006218.1_g000032 Rmu_sc0006218.1_g000033 Rmu_sc0007150.1_g000003 Rmu_sc0007154.1_g000004 Rmu_sc0007154.1_g000005 Rmu_sc0007154.1_g000007 Rmu_sc0008314.1_g000012 Rmu_sc0010073.1_g000023 Rmu_sc0010073.1_g000025 Rmu_sc0011216.1_g000008 Rmu_sc0012445.1_g000005 Rmu_sc0013571.1_g000002 Rmu_sc0018648.1_g000002 Rmu_sc0020961.1_g000002 Rmu_sc0020961.1_g000003 Rmu_sc0023710.1_g000001 Rmu_sc0031310.1_g000008 Rmu_sc0033940.1_g000001 Rmu_sc0035493.1_g000001 Rmu_sc0039285.1_g000001
rosa_roxburghii Rroxscaffold_1G00014000 Rroxscaffold_1G00014020 Rroxscaffold_2G00082760 Rroxscaffold_2G00085090 Rroxscaffold_2G00085100 Rroxscaffold_2G00085140 Rroxscaffold_2G00086670 Rroxscaffold_2G00086680 Rroxscaffold_2G00098190 Rroxscaffold_2G00099270 Rroxscaffold_3G00227460 Rroxscaffold_3G00258190 Rroxscaffold_3G00259780 Rroxscaffold_6G00402940 Rroxscaffold_6G00410200 Rroxscaffold_6G00410210 Rroxscaffold_7G00184320
rosa_rugosa Rorug02G0416100 Rorug02G0416200 Rorug02G0520900 Rorug02G0521200 Rorug02G0521300 Rorug02G0534600 Rorug03G0116300 Rorug03G0162900 Rorug03G0162900 Rorug04G0241400 Rorug05G0380900 Rorug07G0043800
rosa_samantha Rh1AG115300 Rh2BG483700 Rh2BG509900 Rh2BG515700 Rh2BG515800 Rh2BG586500 Rh2BG586600 Rh2BG586700 Rh2BG598800 Rh2BG598900 Rh2BG599100 Rh2BG618400 Rh2BG630500 Rh2CG457400 Rh2CG484900 Rh3AG165300 Rh3AG212900 Rh3AG213300 Rh3BG145800 Rh3BG146100 Rh3BG235300 Rh3BG246500 Rh3BG247000 Rh3BG247100 Rh3CG240300 Rh3CG240800 Rh3CG240900 Rh3CG259600 Rh3DG147000 Rh3DG184800 Rh3DG184900 Rh3DG185000 Rh3DG239500 Rh3DG240100 Rh3DG240200 Rh3DG255800 Rh5BG458500 Rh5CG480400 Rh7BG170400 Rh7BG407900 Rh7CG176900
rosa_wichuraiana Rw2G038990 Rw2G041550 Rw2G047660 Rw2G048940 Rw4G026370 Rw6G008730 Rw7G014600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 560
AarI CACCTGC 1 cut(s) 228
Acc36I ACCTGC 1 cut(s) 228
Acc65I GGTACC 1 cut(s) 516
AccB1I GGYRCC 1 cut(s) 516
AccB7I CCANNNNNTGG 1 cut(s) 230
AciI CCGC 2 cut(s) 144, 860
AcoI YGGCCR 1 cut(s) 355
AcsI RAATTY 2 cut(s) 310, 431
AcuI CTGAAG 1 cut(s) 468
AfaI GTAC 2 cut(s) 413, 518
AfiI CCNNNNNNNGG 1 cut(s) 230
AgsI TTSAA 1 cut(s) 752
Alw26I GTCTC 2 cut(s) 11, 338
Ama87I CYCGRG 1 cut(s) 284
AoxI GGCC 4 cut(s) 183, 355, 416, 468
ApoI RAATTY 2 cut(s) 310, 431
Asp718I GGTACC 1 cut(s) 516
AspS9I GGNCC 4 cut(s) 288, 333, 416, 468
AsuC2I CCSGG 1 cut(s) 169
AsuHPI GGTGA 3 cut(s) 209, 638, 671
AsuII TTCGAA 1 cut(s) 503
AvaI CYCGRG 1 cut(s) 284
AvaII GGWCC 2 cut(s) 288, 333
BaeI ACNNNNGTAYC 2 cut(s) 508, 541
BalI TGGCCA 1 cut(s) 357
BanI GGYRCC 1 cut(s) 516
BccI CCATC 4 cut(s) 347, 601, 640, 749
BceAI ACGGC 1 cut(s) 472
BciVI GTATCC 1 cut(s) 504
BclI TGATCA 1 cut(s) 385
BcnI CCSGG 1 cut(s) 169
BcoDI GTCTC 2 cut(s) 11, 338
BfaI CTAG 2 cut(s) 465, 527
BfuAI ACCTGC 1 cut(s) 228
BfuI GTATCC 1 cut(s) 504
BisI GCNGC 1 cut(s) 144
BlsI GCNGC 1 cut(s) 145
Bme1390I CCNGG 1 cut(s) 169
Bme18I GGWCC 2 cut(s) 288, 333
BmeT110I CYCGRG 1 cut(s) 284
BmgT120I GGNCC 4 cut(s) 288, 333, 416, 468
BmiI GGNNCC 3 cut(s) 289, 335, 518
BmrFI CCNGG 1 cut(s) 169
BmsI GCATC 4 cut(s) 442, 551, 738, 804
BpmI CTGGAG 1 cut(s) 642
Bpu14I TTCGAA 1 cut(s) 503
BpuMI CCSGG 1 cut(s) 169
BsaI GGTCTC 1 cut(s) 338
BsaJI CCNNGG 7 cut(s) 201, 224, 283, 546, 655, 780, 866
BsaXI ACNNNNNCTCC 6 cut(s) 26, 39, 56, 69, 264, 294
Bsc4I CCNNNNNNNGG 1 cut(s) 230
Bse118I RCCGGY 2 cut(s) 418, 833
Bse1I ACTGG 2 cut(s) 432, 625
BseDI CCNNGG 7 cut(s) 201, 224, 283, 546, 655, 780, 866
BseGI GGATG 4 cut(s) 410, 542, 585, 862
BseLI CCNNNNNNNGG 1 cut(s) 230
BseMII CTCAG 1 cut(s) 668
BseNI ACTGG 2 cut(s) 432, 625
BseRI GAGGAG 2 cut(s) 181, 272
BshFI GGCC 4 cut(s) 185, 357, 418, 470
BshNI GGYRCC 1 cut(s) 516
BsiHKCI CYCGRG 1 cut(s) 284
BsiSI CCGG 4 cut(s) 168, 182, 419, 834
BslI CCNNNNNNNGG 1 cut(s) 230
BsmAI GTCTC 2 cut(s) 11, 338
BsmBI CGTCTC 1 cut(s) 11
BsnI GGCC 4 cut(s) 185, 357, 418, 470
Bso31I GGTCTC 1 cut(s) 338
BsoBI CYCGRG 1 cut(s) 284
Bsp119I TTCGAA 1 cut(s) 503
Bsp143I GATC 4 cut(s) 36, 303, 385, 745
Bsp19I CCATGG 2 cut(s) 201, 224
BspACI CCGC 2 cut(s) 144, 860
BspANI GGCC 4 cut(s) 185, 357, 418, 470
BspCNI CTCAG 1 cut(s) 669
BspLI GGNNCC 3 cut(s) 289, 335, 518
BspMI ACCTGC 1 cut(s) 228
BspQI GCTCTTC 1 cut(s) 219
BspT104I TTCGAA 1 cut(s) 503
BspT107I GGYRCC 1 cut(s) 516
BspTNI GGTCTC 1 cut(s) 338
BsrFI RCCGGY 2 cut(s) 418, 833
BsrI ACTGG 2 cut(s) 432, 625
BssAI RCCGGY 2 cut(s) 418, 833
BssECI CCNNGG 7 cut(s) 201, 224, 283, 546, 655, 780, 866
BssMI GATC 4 cut(s) 36, 303, 385, 745
BssT1I CCWWGG 5 cut(s) 201, 224, 546, 655, 780
Bst4CI ACNGT 2 cut(s) 238, 516
Bst6I CTCTTC 1 cut(s) 219
BstBI TTCGAA 1 cut(s) 503
BstC8I GCNNGC 3 cut(s) 141, 187, 835
BstDEI CTNAG 3 cut(s) 566, 572, 677
BstDSI CCRYGG 3 cut(s) 201, 224, 866
BstF5I GGATG 4 cut(s) 410, 542, 585, 862
BstKTI GATC 4 cut(s) 39, 306, 388, 748
BstMAI GTCTC 2 cut(s) 11, 338
BstMBI GATC 4 cut(s) 36, 303, 385, 745
BstMWI GCNNNNNNNGC 2 cut(s) 126, 687
BstSCI CCNGG 1 cut(s) 167
BsuI GTATCC 1 cut(s) 504
BsuRI GGCC 4 cut(s) 185, 357, 418, 470
BtgI CCRYGG 3 cut(s) 201, 224, 866
BtsCI GGATG 4 cut(s) 410, 542, 585, 862
BveI ACCTGC 1 cut(s) 228
Cac8I GCNNGC 3 cut(s) 141, 187, 835
Cfr10I RCCGGY 2 cut(s) 418, 833
Cfr13I GGNCC 4 cut(s) 288, 333, 416, 468
Csp6I GTAC 2 cut(s) 412, 517
CviAII CATG 5 cut(s) 202, 225, 255, 330, 767
CviQI GTAC 2 cut(s) 412, 517
DdeI CTNAG 3 cut(s) 566, 572, 677
DpnI GATC 4 cut(s) 38, 305, 387, 747
DpnII GATC 4 cut(s) 36, 303, 385, 745
EaeI YGGCCR 1 cut(s) 355
Eam1104I CTCTTC 1 cut(s) 219
EarI CTCTTC 1 cut(s) 219
Eco130I CCWWGG 5 cut(s) 201, 224, 546, 655, 780
Eco31I GGTCTC 1 cut(s) 338
Eco32I GATATC 1 cut(s) 67
Eco47I GGWCC 2 cut(s) 288, 333
Eco57I CTGAAG 1 cut(s) 468
Eco88I CYCGRG 1 cut(s) 284
EcoRV GATATC 1 cut(s) 67
EcoT14I CCWWGG 5 cut(s) 201, 224, 546, 655, 780
EcoT22I ATGCAT 1 cut(s) 98
ErhI CCWWGG 5 cut(s) 201, 224, 546, 655, 780
Esp3I CGTCTC 1 cut(s) 11
FaeI CATG 5 cut(s) 205, 228, 258, 333, 770
FatI CATG 5 cut(s) 201, 224, 254, 329, 766
FbaI TGATCA 1 cut(s) 385
Fnu4HI GCNGC 1 cut(s) 144
FokI GGATG 4 cut(s) 417, 529, 592, 849
Fsp4HI GCNGC 1 cut(s) 144
FspBI CTAG 2 cut(s) 465, 527
GluI GCNGC 1 cut(s) 144
GsuI CTGGAG 1 cut(s) 642
HaeIII GGCC 4 cut(s) 185, 357, 418, 470
HapII CCGG 4 cut(s) 168, 182, 419, 834
Hin1II CATG 5 cut(s) 205, 228, 258, 333, 770
HinfI GANTC 3 cut(s) 54, 246, 591
HpaII CCGG 4 cut(s) 168, 182, 419, 834
HphI GGTGA 3 cut(s) 209, 638, 671
Hpy166II GTNNAC 2 cut(s) 808, 855
Hpy188I TCNGA 7 cut(s) 103, 303, 308, 390, 448, 596, 678
Hpy188III TCNNGA 1 cut(s) 749
Hpy8I GTNNAC 2 cut(s) 808, 855
HpyAV CCTTC 2 cut(s) 25, 269
HpyCH4III ACNGT 2 cut(s) 238, 516
HpyCH4V TGCA 5 cut(s) 73, 96, 542, 639, 729
HpyF10VI GCNNNNNNNGC 2 cut(s) 126, 687
HpyF3I CTNAG 3 cut(s) 566, 572, 677
Hsp92II CATG 5 cut(s) 205, 228, 258, 333, 770
KpnI GGTACC 1 cut(s) 520
KroI GCCGGC 1 cut(s) 833
KroNI GCCGGC 1 cut(s) 835
Ksp22I TGATCA 1 cut(s) 385
Kzo9I GATC 4 cut(s) 36, 303, 385, 745
LguI GCTCTTC 1 cut(s) 219
LmnI GCTCC 2 cut(s) 194, 792
LweI GCATC 4 cut(s) 442, 551, 738, 804
MaeI CTAG 2 cut(s) 465, 527
MaeIII GTNAC 4 cut(s) 45, 460, 646, 821
MalI GATC 4 cut(s) 38, 305, 387, 747
MboI GATC 4 cut(s) 36, 303, 385, 745
MboII GAAGA 4 cut(s) 40, 206, 461, 764
MfeI CAATTG 1 cut(s) 74
MlsI TGGCCA 1 cut(s) 357
MluCI AATT 8 cut(s) 74, 310, 381, 392, 431, 478, 551, 561
MluNI TGGCCA 1 cut(s) 357
MlyI GAGTC 1 cut(s) 48
MmeI TCCRAC 2 cut(s) 382, 557
MnlI CCTC 8 cut(s) 149, 189, 202, 293, 347, 531, 617, 637
Mox20I TGGCCA 1 cut(s) 357
Mph1103I ATGCAT 1 cut(s) 98
MroNI GCCGGC 1 cut(s) 833
MscI TGGCCA 1 cut(s) 357
Msp20I TGGCCA 1 cut(s) 357
MspA1I CMGCKG 1 cut(s) 146
MspI CCGG 4 cut(s) 168, 182, 419, 834
MspR9I CCNGG 1 cut(s) 169
MunI CAATTG 1 cut(s) 74
MwoI GCNNNNNNNGC 2 cut(s) 126, 687
NaeI GCCGGC 1 cut(s) 835
NciI CCSGG 1 cut(s) 169
NcoI CCATGG 2 cut(s) 201, 224
NdeII GATC 4 cut(s) 36, 303, 385, 745
NgoMIV GCCGGC 1 cut(s) 833
NlaIII CATG 5 cut(s) 205, 228, 258, 333, 770
NlaIV GGNNCC 3 cut(s) 289, 335, 518
NmuCI GTSAC 2 cut(s) 45, 460
NsiI ATGCAT 1 cut(s) 98
NspV TTCGAA 1 cut(s) 503
PaqCI CACCTGC 1 cut(s) 228
PciSI GCTCTTC 1 cut(s) 219
PcsI WCGNNNNNNNCGW 1 cut(s) 520
PdiI GCCGGC 1 cut(s) 835
PfeI GAWTC 2 cut(s) 246, 591
PflMI CCANNNNNTGG 1 cut(s) 230
PkrI GCNGC 1 cut(s) 145
PleI GAGTC 1 cut(s) 48
PpsI GAGTC 1 cut(s) 48
PsiI TTATAA 1 cut(s) 560
PspN4I GGNNCC 3 cut(s) 289, 335, 518
PspPI GGNCC 4 cut(s) 288, 333, 416, 468
RsaI GTAC 2 cut(s) 413, 518
RsaNI GTAC 2 cut(s) 412, 517
SapI GCTCTTC 1 cut(s) 219
SatI GCNGC 1 cut(s) 144
Sau3AI GATC 4 cut(s) 36, 303, 385, 745
Sau96I GGNCC 4 cut(s) 288, 333, 416, 468
SchI GAGTC 1 cut(s) 48
ScrFI CCNGG 1 cut(s) 169
SetI ASST 7 cut(s) 44, 160, 222, 628, 648, 657, 699
SfaNI GCATC 4 cut(s) 442, 551, 738, 804
SfuI TTCGAA 1 cut(s) 503
SinI GGWCC 2 cut(s) 288, 333
Sse9I AATT 8 cut(s) 74, 310, 381, 392, 431, 478, 551, 561
SsiI CCGC 2 cut(s) 144, 860
SspMI CTAG 2 cut(s) 465, 527
StyD4I CCNGG 1 cut(s) 167
StyI CCWWGG 5 cut(s) 201, 224, 546, 655, 780
TaaI ACNGT 2 cut(s) 238, 516
TaqI TCGA 2 cut(s) 503, 798
TasI AATT 8 cut(s) 74, 310, 381, 392, 431, 478, 551, 561
TauI GCSGC 1 cut(s) 146
TfiI GAWTC 2 cut(s) 246, 591
TseFI GTSAC 2 cut(s) 45, 460
Tsp45I GTSAC 2 cut(s) 45, 460
TspGWI ACGGA 2 cut(s) 29, 855
Van91I CCANNNNNTGG 1 cut(s) 230
VpaK11BI GGWCC 2 cut(s) 288, 333
XapI RAATTY 2 cut(s) 310, 431
XspI CTAG 2 cut(s) 465, 527
Zsp2I ATGCAT 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.