Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8460513.1

Orthogroup ID

OG0000142

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1755

Gene Structure 1755 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8460513.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 895 bp

atgcaattgattctacaacgattgcacatgtctgattatcttagttgtcgtgacgtatgccgttcttggcgagctgtaatcgtcagcaaacgtcgtcttccggctaatgatcctactaatcaactcccatggcttttgctcgattcttgttattcatactacatcaaagatggctgcctcgtaagtgatcgaaagctttacaaatccaaaaaggattgcacaatttactggccgcgttgtgttggatcaattgagggttggctgatcatgtcttctaaatatgaatcagtttatcacttcttcctcttgaaccccgtattaggagctcaaattatgctcccatcacattccgcaggtaaagtctataaaataaaagcagcagcctcttcaataccaacggaaacaaggttgcagcagccgcggcggctgtgttatgtgtcttgccttgtttcttgcattgacgttgaaaaacaaggtcagttggctttttgtgcccccggtgataaatcatggacctccattgaggccgaggcggcggagtgggatgatatggctctaggatttctggatatagaaatagttgatgggaaattatatgcggtaggtagccacgcattagagtttttaatggtgtttgacattgaattagataccaatggctgcggaattcatacctgcacagcgcaaaggttggttactcatcaccccaactttgagagcgtcgttgaagacagagtttaccatcggatttgttacctagcaaaaggttctgaatcaaatgagttgtttatgattttgcataagcatcatcgttacacgaccagaggatttcaagtgttgaagttggagtataatgttacgactggtcctcagtgggtagagattgttgacctcg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000463 GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0010468 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0022613 GO:0030684 GO:0030686 GO:0031323 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044087 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0070545 GO:0071704 GO:0071840 GO:0080090 GO:0090069 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904 GO:2000232

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT_2 Pescadillo_N

Protein Analysis

298

Amino Acids

34.13

Weight (kDa)

6.82

Isoelectric Point (pI)

39.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000142)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13532 FvH4_2g28870 FvH4_3g30930 FvH4_3g37281 FvH4_3g37300 FvH4_3g37301 FvH4_3g37301 FvH4_4g23711 FvH4_5g02330 FvH4_6g16960 FvH4_6g16971 FvH4_6g21291 FvH4_6g21331 FvH4_6g22212 FvH4_6g22332 FvH4_6g36920 FvH4_6g37552 FvH4_6g37591 FvH4_6g39721 FvH4_6g46020 FvH4_6g47001 FvH4_6g47002 FvH4_6g47130 FvH4_6g47140 FvH4_6g47161 FvH4_6g47170 FvH4_6g47190 FvH4_6g49120 FvH4_6g49280 FvH4_6g49281 FvH4_6g49640 FvH4_6g49640
malus_domestica	MD03G1085600.v1.1 MD09G1027500.v1.1 MD09G1050100.v1.1
prunus_persica	Prupe.1G004300_v2.0.a1 Prupe.1G016300_v2.0.a1 Prupe.1G019300_v2.0.a1 Prupe.3G239100_v2.0.a1 Prupe.3G291200_v2.0.a1
pyrus_communis	pycom08g02840 pycom08g02860 pycom08g02870
rosa_chinensis	RchiOBHm_Chr2g0153831 RchiOBHm_Chr2g0166171 RchiOBHm_Chr2g0166201 RchiOBHm_Chr3g0476221 RchiOBHm_Chr4g0430971 RchiOBHm_Chr5g0067081 RchiOBHm_Chr7g0197821
rosa_laevigata	RLG00000001284 RLG00000006996 RLG00000012710 RLG00000019299 RLG00000020285 RLG00000020444 RLG00000020466 RLG00000020591 RLG00000020665 RLG00000020730 RLG00000020732 RLG00000021449 RLG00000021592 RLG00000021593 RLG00000021594 RLG00000021596 RLG00000021597 RLG00000021801 RLG00000023534 RLG00000023538 RLG00000023693 RLG00000023694 RLG00000023699 RLG00000024196 RLG00000024214 RLG00000024220 RLG00000024244 RLG00000024608 RLG00000024612 RLG00000035157 RLG00000035906
rosa_multiflora	Rmu_co8282815.1_g000001 Rmu_co8380495.1_g000001 Rmu_co8381111.1_g000001 Rmu_co8460513.1_g000001 Rmu_co8481947.1_g000001 Rmu_co8487937.1_g000001 Rmu_sc0000151.1_g000017 Rmu_sc0001427.1_g000003 Rmu_sc0001427.1_g000006 Rmu_sc0002611.1_g000008 Rmu_sc0003887.1_g000018 Rmu_sc0003887.1_g000019 Rmu_sc0003887.1_g000021 Rmu_sc0004119.1_g000004 Rmu_sc0004329.1_g000003 Rmu_sc0004485.1_g000024 Rmu_sc0005290.1_g000001 Rmu_sc0005609.1_g000006 Rmu_sc0006187.1_g000018 Rmu_sc0006218.1_g000032 Rmu_sc0006218.1_g000033 Rmu_sc0007150.1_g000003 Rmu_sc0007154.1_g000004 Rmu_sc0007154.1_g000005 Rmu_sc0007154.1_g000007 Rmu_sc0008314.1_g000012 Rmu_sc0010073.1_g000023 Rmu_sc0010073.1_g000025 Rmu_sc0011216.1_g000008 Rmu_sc0012445.1_g000005 Rmu_sc0013571.1_g000002 Rmu_sc0018648.1_g000002 Rmu_sc0020961.1_g000002 Rmu_sc0020961.1_g000003 Rmu_sc0023710.1_g000001 Rmu_sc0031310.1_g000008 Rmu_sc0033940.1_g000001 Rmu_sc0035493.1_g000001 Rmu_sc0039285.1_g000001
rosa_roxburghii	Rroxscaffold_1G00014000 Rroxscaffold_1G00014020 Rroxscaffold_2G00082760 Rroxscaffold_2G00085090 Rroxscaffold_2G00085100 Rroxscaffold_2G00085140 Rroxscaffold_2G00086670 Rroxscaffold_2G00086680 Rroxscaffold_2G00098190 Rroxscaffold_2G00099270 Rroxscaffold_3G00227460 Rroxscaffold_3G00258190 Rroxscaffold_3G00259780 Rroxscaffold_6G00402940 Rroxscaffold_6G00410200 Rroxscaffold_6G00410210 Rroxscaffold_7G00184320
rosa_rugosa	Rorug02G0416100 Rorug02G0416200 Rorug02G0520900 Rorug02G0521200 Rorug02G0521300 Rorug02G0534600 Rorug03G0116300 Rorug03G0162900 Rorug03G0162900 Rorug04G0241400 Rorug05G0380900 Rorug07G0043800
rosa_samantha	Rh1AG115300 Rh2BG483700 Rh2BG509900 Rh2BG515700 Rh2BG515800 Rh2BG586500 Rh2BG586600 Rh2BG586700 Rh2BG598800 Rh2BG598900 Rh2BG599100 Rh2BG618400 Rh2BG630500 Rh2CG457400 Rh2CG484900 Rh3AG165300 Rh3AG212900 Rh3AG213300 Rh3BG145800 Rh3BG146100 Rh3BG235300 Rh3BG246500 Rh3BG247000 Rh3BG247100 Rh3CG240300 Rh3CG240800 Rh3CG240900 Rh3CG259600 Rh3DG147000 Rh3DG184800 Rh3DG184900 Rh3DG185000 Rh3DG239500 Rh3DG240100 Rh3DG240200 Rh3DG255800 Rh5BG458500 Rh5CG480400 Rh7BG170400 Rh7BG407900 Rh7CG176900
rosa_wichuraiana	Rw2G038990 Rw2G041550 Rw2G047660 Rw2G048940 Rw4G026370 Rw6G008730 Rw7G014600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	344, 683
AccII	CGCG	2 cut(s)	235, 421
AciI	CCGC	9 cut(s)	233, 351, 419, 421, 424, 533, 536, 599, 663
AclWI	GGATC	2 cut(s)	104, 253
AcoI	YGGCCR	1 cut(s)	230
AcsI	RAATTY	1 cut(s)	666
AfiI	CCNNNNNNNGG	1 cut(s)	320
AflIII	ACRYGT	1 cut(s)	27
AgsI	TTSAA	7 cut(s)	310, 390, 467, 644, 728, 833, 841
AluBI	AGCT	3 cut(s)	74, 196, 326
AluI	AGCT	3 cut(s)	74, 196, 326
Alw21I	GWGCWC	1 cut(s)	328
AlwI	GGATC	2 cut(s)	104, 253
AoxI	GGCC	2 cut(s)	230, 525
ApeKI	GCWGC	6 cut(s)	174, 377, 380, 412, 415, 660
ApoI	RAATTY	1 cut(s)	666
AspLEI	GCGC	1 cut(s)	685
AspS9I	GGNCC	2 cut(s)	513, 866
AsuC2I	CCSGG	1 cut(s)	498
AsuHPI	GGTGA	2 cut(s)	512, 695
AvaII	GGWCC	2 cut(s)	513, 866
BaeGI	GKGCMC	1 cut(s)	496
BanII	GRGCYC	1 cut(s)	328
BbsI	GAAGAC	3 cut(s)	89, 264, 735
Bbv12I	GWGCWC	1 cut(s)	328
BbvI	GCAGC	6 cut(s)	161, 389, 392, 424, 427, 647
BccI	CCATC	4 cut(s)	164, 349, 578, 750
BceAI	ACGGC	1 cut(s)	45
BclI	TGATCA	1 cut(s)	264
BcnI	CCSGG	1 cut(s)	498
BfaI	CTAG	2 cut(s)	557, 758
BfuAI	ACCTGC	2 cut(s)	344, 683
BglI	GCCNNNNNGGC	2 cut(s)	424, 533
Bme1390I	CCNGG	1 cut(s)	498
Bme18I	GGWCC	2 cut(s)	513, 866
BmgT120I	GGNCC	2 cut(s)	513, 866
BmrFI	CCNGG	1 cut(s)	498
BmsI	GCATC	1 cut(s)	814
BpiI	GAAGAC	3 cut(s)	89, 264, 735
BpuMI	CCSGG	1 cut(s)	498
BsaJI	CCNNGG	4 cut(s)	128, 419, 496, 528
Bsc4I	CCNNNNNNNGG	1 cut(s)	320
Bse1I	ACTGG	2 cut(s)	233, 868
BseDI	CCNNGG	4 cut(s)	128, 419, 496, 528
BseGI	GGATG	1 cut(s)	550
BseLI	CCNNNNNNNGG	1 cut(s)	320
BseMII	CTCAG	1 cut(s)	884
BseNI	ACTGG	2 cut(s)	233, 868
BseSI	GKGCMC	1 cut(s)	496
BseXI	GCAGC	6 cut(s)	161, 389, 392, 424, 427, 647
BsgI	GTGCAG	1 cut(s)	661
Bsh1236I	CGCG	2 cut(s)	235, 421
BshFI	GGCC	2 cut(s)	232, 527
BsiHKAI	GWGCWC	1 cut(s)	328
BsiSI	CCGG	2 cut(s)	101, 498
BslI	CCNNNNNNNGG	1 cut(s)	320
BsnI	GGCC	2 cut(s)	232, 527
Bsp1286I	GDGCHC	2 cut(s)	328, 496
Bsp143I	GATC	4 cut(s)	109, 187, 245, 264
Bsp19I	CCATGG	1 cut(s)	128
BspACI	CCGC	9 cut(s)	233, 351, 419, 421, 424, 533, 536, 599, 663
BspANI	GGCC	2 cut(s)	232, 527
BspCNI	CTCAG	1 cut(s)	883
BspFNI	CGCG	2 cut(s)	235, 421
BspMI	ACCTGC	2 cut(s)	344, 683
BspPI	GGATC	2 cut(s)	104, 253
BsrI	ACTGG	2 cut(s)	233, 868
BssECI	CCNNGG	4 cut(s)	128, 419, 496, 528
BssMI	GATC	4 cut(s)	109, 187, 245, 264
BssT1I	CCWWGG	1 cut(s)	128
Bst6I	CTCTTC	1 cut(s)	391
BstC8I	GCNNGC	1 cut(s)	72
BstDEI	CTNAG	2 cut(s)	41, 870
BstDSI	CCRYGG	2 cut(s)	128, 419
BstF5I	GGATG	1 cut(s)	550
BstFNI	CGCG	2 cut(s)	235, 421
BstHHI	GCGC	1 cut(s)	685
BstKTI	GATC	4 cut(s)	112, 190, 248, 267
BstMBI	GATC	4 cut(s)	109, 187, 245, 264
BstMWI	GCNNNNNNNGC	5 cut(s)	418, 421, 424, 491, 533
BstNSI	RCATGY	1 cut(s)	31
BstSCI	CCNGG	1 cut(s)	496
BstSLI	GKGCMC	1 cut(s)	496
BstUI	CGCG	2 cut(s)	235, 421
BstV1I	GCAGC	6 cut(s)	161, 389, 392, 424, 427, 647
BstV2I	GAAGAC	3 cut(s)	89, 264, 735
BsuRI	GGCC	2 cut(s)	232, 527
BtgI	CCRYGG	2 cut(s)	128, 419
BtsCI	GGATG	1 cut(s)	550
BtsIMutI	CAGTG	1 cut(s)	878
BveI	ACCTGC	2 cut(s)	344, 683
Cac8I	GCNNGC	1 cut(s)	72
CfoI	GCGC	1 cut(s)	685
Cfr13I	GGNCC	2 cut(s)	513, 866
Cfr42I	CCGCGG	1 cut(s)	422
CseI	GACGC	1 cut(s)	709
CviAII	CATG	4 cut(s)	28, 129, 268, 510
DdeI	CTNAG	2 cut(s)	41, 870
DpnI	GATC	4 cut(s)	111, 189, 247, 266
DpnII	GATC	4 cut(s)	109, 187, 245, 264
EaeI	YGGCCR	1 cut(s)	230
Eam1104I	CTCTTC	1 cut(s)	391
EarI	CTCTTC	1 cut(s)	391
EciI	GGCGGA	1 cut(s)	551
Ecl136II	GAGCTC	1 cut(s)	326
Eco130I	CCWWGG	1 cut(s)	128
Eco24I	GRGCYC	1 cut(s)	328
Eco47I	GGWCC	2 cut(s)	513, 866
Eco53kI	GAGCTC	1 cut(s)	326
EcoICRI	GAGCTC	1 cut(s)	326
EcoRI	GAATTC	1 cut(s)	666
EcoT14I	CCWWGG	1 cut(s)	128
EcoT38I	GRGCYC	1 cut(s)	328
ErhI	CCWWGG	1 cut(s)	128
FaeI	CATG	4 cut(s)	31, 132, 271, 513
FatI	CATG	4 cut(s)	27, 128, 267, 509
FbaI	TGATCA	1 cut(s)	264
FokI	GGATG	1 cut(s)	557
FriOI	GRGCYC	1 cut(s)	328
FspBI	CTAG	2 cut(s)	557, 758
GlaI	GCGC	1 cut(s)	684
HaeIII	GGCC	2 cut(s)	232, 527
HapII	CCGG	2 cut(s)	101, 498
HgaI	GACGC	1 cut(s)	709
HhaI	GCGC	1 cut(s)	685
Hin1II	CATG	4 cut(s)	31, 132, 271, 513
Hin6I	GCGC	1 cut(s)	683
HinP1I	GCGC	1 cut(s)	683
HincII	GTYRAC	1 cut(s)	889
HindII	GTYRAC	1 cut(s)	889
HindIII	AAGCTT	1 cut(s)	194
HinfI	GANTC	4 cut(s)	10, 143, 284, 773
HpaII	CCGG	2 cut(s)	101, 498
HphI	GGTGA	2 cut(s)	512, 695
Hpy166II	GTNNAC	2 cut(s)	739, 889
Hpy188I	TCNGA	3 cut(s)	34, 747, 772
Hpy188III	TCNNGA	3 cut(s)	50, 307, 566
Hpy8I	GTNNAC	2 cut(s)	739, 889
Hpy99I	CGWCG	2 cut(s)	96, 725
HpyCH4IV	ACGT	3 cut(s)	54, 91, 462
HpyCH4V	TGCA	7 cut(s)	4, 25, 219, 412, 456, 678, 799
HpyF10VI	GCNNNNNNNGC	5 cut(s)	418, 421, 424, 491, 533
HpyF3I	CTNAG	2 cut(s)	41, 870
HpySE526I	ACGT	3 cut(s)	54, 91, 462
Hsp92II	CATG	4 cut(s)	31, 132, 271, 513
HspAI	GCGC	1 cut(s)	683
Ksp22I	TGATCA	1 cut(s)	264
KspI	CCGCGG	1 cut(s)	422
Kzo9I	GATC	4 cut(s)	109, 187, 245, 264
LmnI	GCTCC	2 cut(s)	323, 342
LpnPI	CCDG	8 cut(s)	114, 214, 339, 511, 551, 688, 835, 849
Lsp1109I	GCAGC	6 cut(s)	161, 389, 392, 424, 427, 647
LweI	GCATC	1 cut(s)	814
MaeI	CTAG	2 cut(s)	557, 758
MaeII	ACGT	3 cut(s)	54, 91, 462
MaeIII	GTNAC	5 cut(s)	50, 694, 752, 812, 856
MalI	GATC	4 cut(s)	111, 189, 247, 266
MboI	GATC	4 cut(s)	109, 187, 245, 264
MboII	GAAGA	5 cut(s)	89, 264, 292, 378, 740
MfeI	CAATTG	2 cut(s)	5, 249
MhlI	GDGCHC	2 cut(s)	328, 496
MluCI	AATT	7 cut(s)	5, 222, 249, 330, 590, 644, 666
MmeI	TCCRAC	2 cut(s)	223, 825
MnlI	CCTC	9 cut(s)	188, 247, 314, 394, 517, 523, 526, 818, 879
MseI	TTAA	1 cut(s)	626
MspA1I	CMGCKG	1 cut(s)	421
MspI	CCGG	2 cut(s)	101, 498
MspR9I	CCNGG	1 cut(s)	498
MunI	CAATTG	2 cut(s)	5, 249
MvnI	CGCG	2 cut(s)	235, 421
MwoI	GCNNNNNNNGC	5 cut(s)	418, 421, 424, 491, 533
NciI	CCSGG	1 cut(s)	498
NcoI	CCATGG	1 cut(s)	128
NdeII	GATC	4 cut(s)	109, 187, 245, 264
NlaIII	CATG	4 cut(s)	31, 132, 271, 513
NmeAIII	GCCGAG	1 cut(s)	553
NmuCI	GTSAC	1 cut(s)	50
NspI	RCATGY	1 cut(s)	31
PciI	ACATGT	1 cut(s)	27
PfeI	GAWTC	4 cut(s)	10, 143, 284, 773
PscI	ACATGT	1 cut(s)	27
Psp124BI	GAGCTC	1 cut(s)	328
PspPI	GGNCC	2 cut(s)	513, 866
SacI	GAGCTC	1 cut(s)	328
SacII	CCGCGG	1 cut(s)	422
SaqAI	TTAA	1 cut(s)	626
Sau3AI	GATC	4 cut(s)	109, 187, 245, 264
Sau96I	GGNCC	2 cut(s)	513, 866
ScrFI	CCNGG	1 cut(s)	498
SduI	GDGCHC	2 cut(s)	328, 496
SfaNI	GCATC	1 cut(s)	814
Sfr303I	CCGCGG	1 cut(s)	422
SgrBI	CCGCGG	1 cut(s)	422
SinI	GGWCC	2 cut(s)	513, 866
Sse9I	AATT	7 cut(s)	5, 222, 249, 330, 590, 644, 666
SsiI	CCGC	9 cut(s)	233, 351, 419, 421, 424, 533, 536, 599, 663
SspMI	CTAG	2 cut(s)	557, 758
SstI	GAGCTC	1 cut(s)	328
StyD4I	CCNGG	1 cut(s)	496
StyI	CCWWGG	1 cut(s)	128
TaiI	ACGT	3 cut(s)	57, 94, 465
TaqI	TCGA	2 cut(s)	141, 190
TasI	AATT	7 cut(s)	5, 222, 249, 330, 590, 644, 666
TauI	GCSGC	5 cut(s)	235, 421, 424, 427, 536
TfiI	GAWTC	4 cut(s)	10, 143, 284, 773
Tru1I	TTAA	1 cut(s)	626
Tru9I	TTAA	1 cut(s)	626
TscAI	CASTG	1 cut(s)	878
TseFI	GTSAC	1 cut(s)	50
TseI	GCWGC	6 cut(s)	174, 377, 380, 412, 415, 660
Tsp45I	GTSAC	1 cut(s)	50
TspDTI	ATGAA	3 cut(s)	144, 297, 659
TspGWI	ACGGA	1 cut(s)	413
TspRI	CASTG	1 cut(s)	878
VpaK11BI	GGWCC	2 cut(s)	513, 866
XapI	RAATTY	1 cut(s)	666
XceI	RCATGY	1 cut(s)	31
XspI	CTAG	2 cut(s)	557, 758

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.