Rh2BG586600

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Reverse (-)
80236217 .. 80236906
690 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG586600.1

Sequence Viewer

Length: 690 bp
ATGGAGTCGACTTTTCTTCCTCCTCCTCATCAACTTCCATGGCTTCTCCTCGATGCTCCTCATCCCTTCTACATCCAAAACCAATGCTTTCGCAGCGGTCGAGCTGTTCCCAGAACTTTCGAATCAAACCCCAAAACGTTACATTATGAGCGGAACTGTGTTGGGTCGGTAGAGGGGTGGTTGATCATGACGGAGAGCATTAAAAGCTCTCCCATTGTCAACTTCTTCATGGATCCACTATCCAATGCCCGAGTCGCTTTCCCATCACAATCCACAATTAGGTCTCCCGAAAACCATAGACAAGATTTCTTCCACAAAGTAGTAGCCTCTTCGGCCCCAATGGGACAGCAGCGCTGCCTTGTGGCAGGCATTGTGGCCGGCCCTGTAGTGGATTGCATTGAAGTACGTCACGATTTGGCTCTTTGTAGGCTCAATCATAAATCATGGACCATCATTAAGGTTGCAGAGGTGGAGGATCACGAGTTATTATTCTGCGACATAGAAATAATTGATCGGAAATTATATGCCGCAACGAAGAACATGCTTATGGTGTTTTACATCAAAGACACTAAGGATGGCCGTTGCCTTAGCTATAAGCTTGTAGAGACAGTTACGCTTCAGTACAATAAGCCAGTTAATTGGCCTTATGATCACTATGGACTAGATAAAGATTGGTACAAGCCCTTTTAA

Protein Analysis

229

Amino Acids

26.48

Weight (kDa)

7.1

Isoelectric Point (pI)

52.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 49 - 190 1.1e-14 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000142)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13532 FvH4_2g28870 FvH4_3g30930 FvH4_3g37281 FvH4_3g37300 FvH4_3g37301 FvH4_3g37301 FvH4_4g23711 FvH4_5g02330 FvH4_6g16960 FvH4_6g16971 FvH4_6g21291 FvH4_6g21331 FvH4_6g22212 FvH4_6g22332 FvH4_6g36920 FvH4_6g37552 FvH4_6g37591 FvH4_6g39721 FvH4_6g46020 FvH4_6g47001 FvH4_6g47002 FvH4_6g47130 FvH4_6g47140 FvH4_6g47161 FvH4_6g47170 FvH4_6g47190 FvH4_6g49120 FvH4_6g49280 FvH4_6g49281 FvH4_6g49640 FvH4_6g49640
malus_domestica MD03G1085600.v1.1 MD09G1027500.v1.1 MD09G1050100.v1.1
prunus_persica Prupe.1G004300_v2.0.a1 Prupe.1G016300_v2.0.a1 Prupe.1G019300_v2.0.a1 Prupe.3G239100_v2.0.a1 Prupe.3G291200_v2.0.a1
pyrus_communis pycom08g02840 pycom08g02860 pycom08g02870
rosa_chinensis RchiOBHm_Chr2g0153831 RchiOBHm_Chr2g0166171 RchiOBHm_Chr2g0166201 RchiOBHm_Chr3g0476221 RchiOBHm_Chr4g0430971 RchiOBHm_Chr5g0067081 RchiOBHm_Chr7g0197821
rosa_laevigata RLG00000001284 RLG00000006996 RLG00000012710 RLG00000019299 RLG00000020285 RLG00000020444 RLG00000020466 RLG00000020591 RLG00000020665 RLG00000020730 RLG00000020732 RLG00000021449 RLG00000021592 RLG00000021593 RLG00000021594 RLG00000021596 RLG00000021597 RLG00000021801 RLG00000023534 RLG00000023538 RLG00000023693 RLG00000023694 RLG00000023699 RLG00000024196 RLG00000024214 RLG00000024220 RLG00000024244 RLG00000024608 RLG00000024612 RLG00000035157 RLG00000035906
rosa_multiflora Rmu_co8282815.1_g000001 Rmu_co8380495.1_g000001 Rmu_co8381111.1_g000001 Rmu_co8460513.1_g000001 Rmu_co8481947.1_g000001 Rmu_co8487937.1_g000001 Rmu_sc0000151.1_g000017 Rmu_sc0001427.1_g000003 Rmu_sc0001427.1_g000006 Rmu_sc0002611.1_g000008 Rmu_sc0003887.1_g000018 Rmu_sc0003887.1_g000019 Rmu_sc0003887.1_g000021 Rmu_sc0004119.1_g000004 Rmu_sc0004329.1_g000003 Rmu_sc0004485.1_g000024 Rmu_sc0005290.1_g000001 Rmu_sc0005609.1_g000006 Rmu_sc0006187.1_g000018 Rmu_sc0006218.1_g000032 Rmu_sc0006218.1_g000033 Rmu_sc0007150.1_g000003 Rmu_sc0007154.1_g000004 Rmu_sc0007154.1_g000005 Rmu_sc0007154.1_g000007 Rmu_sc0008314.1_g000012 Rmu_sc0010073.1_g000023 Rmu_sc0010073.1_g000025 Rmu_sc0011216.1_g000008 Rmu_sc0012445.1_g000005 Rmu_sc0013571.1_g000002 Rmu_sc0018648.1_g000002 Rmu_sc0020961.1_g000002 Rmu_sc0020961.1_g000003 Rmu_sc0023710.1_g000001 Rmu_sc0031310.1_g000008 Rmu_sc0033940.1_g000001 Rmu_sc0035493.1_g000001 Rmu_sc0039285.1_g000001
rosa_roxburghii Rroxscaffold_1G00014000 Rroxscaffold_1G00014020 Rroxscaffold_2G00082760 Rroxscaffold_2G00085090 Rroxscaffold_2G00085100 Rroxscaffold_2G00085140 Rroxscaffold_2G00086670 Rroxscaffold_2G00086680 Rroxscaffold_2G00098190 Rroxscaffold_2G00099270 Rroxscaffold_3G00227460 Rroxscaffold_3G00258190 Rroxscaffold_3G00259780 Rroxscaffold_6G00402940 Rroxscaffold_6G00410200 Rroxscaffold_6G00410210 Rroxscaffold_7G00184320
rosa_rugosa Rorug02G0416100 Rorug02G0416200 Rorug02G0520900 Rorug02G0521200 Rorug02G0521300 Rorug02G0534600 Rorug03G0116300 Rorug03G0162900 Rorug03G0162900 Rorug04G0241400 Rorug05G0380900 Rorug07G0043800
rosa_samantha Rh1AG115300 Rh2BG483700 Rh2BG509900 Rh2BG515700 Rh2BG515800 Rh2BG586500 Rh2BG586600 Rh2BG586700 Rh2BG598800 Rh2BG598900 Rh2BG599100 Rh2BG618400 Rh2BG630500 Rh2CG457400 Rh2CG484900 Rh3AG165300 Rh3AG212900 Rh3AG213300 Rh3BG145800 Rh3BG146100 Rh3BG235300 Rh3BG246500 Rh3BG247000 Rh3BG247100 Rh3CG240300 Rh3CG240800 Rh3CG240900 Rh3CG259600 Rh3DG147000 Rh3DG184800 Rh3DG184900 Rh3DG185000 Rh3DG239500 Rh3DG240100 Rh3DG240200 Rh3DG255800 Rh5BG458500 Rh5CG480400 Rh7BG170400 Rh7BG407900 Rh7CG176900
rosa_wichuraiana Rw2G038990 Rw2G041550 Rw2G047660 Rw2G048940 Rw4G026370 Rw6G008730 Rw7G014600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 151
AccI GTMKAC 1 cut(s) 8
AciI CCGC 3 cut(s) 96, 151, 528
AclI AACGTT 1 cut(s) 137
AclWI GGATC 3 cut(s) 227, 240, 483
AcoI YGGCCR 2 cut(s) 375, 577
AcuI CTGAAG 1 cut(s) 602
AfaI GTAC 3 cut(s) 405, 623, 677
AfeI AGCGCT 1 cut(s) 353
AfiI CCNNNNNNNGG 2 cut(s) 279, 388
AgsI TTSAA 1 cut(s) 401
AluBI AGCT 4 cut(s) 104, 207, 591, 598
AluI AGCT 4 cut(s) 104, 207, 591, 598
Alw26I GTCTC 2 cut(s) 288, 599
AlwI GGATC 3 cut(s) 227, 240, 483
Ama87I CYCGRG 1 cut(s) 249
Aor51HI AGCGCT 1 cut(s) 353
AoxI GGCC 5 cut(s) 333, 375, 379, 577, 641
ApeKI GCWGC 3 cut(s) 93, 349, 354
AspLEI GCGC 1 cut(s) 354
AspS9I GGNCC 3 cut(s) 334, 380, 447
AsuII TTCGAA 1 cut(s) 120
AvaI CYCGRG 1 cut(s) 249
AvaII GGWCC 1 cut(s) 447
BamHI GGATCC 1 cut(s) 232
BauI CACGAG 1 cut(s) 479
BbvI GCAGC 3 cut(s) 105, 341, 361
BccI CCATC 3 cut(s) 271, 458, 569
BceAI ACGGC 1 cut(s) 564
BcgI CGANNNNNNTGC 2 cut(s) 523, 557
BclI TGATCA 2 cut(s) 183, 649
BcoDI GTCTC 2 cut(s) 288, 599
BfaI CTAG 1 cut(s) 662
BfmI CTRYAG 1 cut(s) 384
BfoI RGCGCY 1 cut(s) 355
BglI GCCNNNNNGGC 1 cut(s) 332
BisI GCNGC 4 cut(s) 94, 350, 355, 528
BlsI GCNGC 4 cut(s) 95, 351, 356, 529
Bme18I GGWCC 1 cut(s) 447
BmeT110I CYCGRG 1 cut(s) 249
BmgT120I GGNCC 3 cut(s) 334, 380, 447
BmiI GGNNCC 2 cut(s) 234, 336
BmsI GCATC 1 cut(s) 43
Bpu10I CCTNAGC 1 cut(s) 587
Bpu14I TTCGAA 1 cut(s) 120
BsaI GGTCTC 1 cut(s) 288
BsaJI CCNNGG 1 cut(s) 38
Bsc4I CCNNNNNNNGG 2 cut(s) 279, 388
Bse118I RCCGGY 1 cut(s) 377
Bse1I ACTGG 1 cut(s) 632
BseDI CCNNGG 1 cut(s) 38
BseGI GGATG 3 cut(s) 61, 72, 580
BseLI CCNNNNNNNGG 2 cut(s) 279, 388
BseNI ACTGG 1 cut(s) 632
BseRI GAGGAG 4 cut(s) 12, 15, 38, 48
BseXI GCAGC 3 cut(s) 105, 341, 361
Bsh1285I CGRYCG 1 cut(s) 100
BshFI GGCC 5 cut(s) 335, 377, 381, 579, 643
BsiEI CGRYCG 1 cut(s) 100
BsiHKCI CYCGRG 1 cut(s) 249
BsiSI CCGG 1 cut(s) 378
BslFI GGGAC 1 cut(s) 357
BslI CCNNNNNNNGG 2 cut(s) 279, 388
BsmAI GTCTC 2 cut(s) 288, 599
BsmFI GGGAC 1 cut(s) 357
BsnI GGCC 5 cut(s) 335, 377, 381, 579, 643
Bso31I GGTCTC 1 cut(s) 288
BsoBI CYCGRG 1 cut(s) 249
Bsp119I TTCGAA 1 cut(s) 120
Bsp143I GATC 5 cut(s) 183, 232, 475, 511, 649
Bsp19I CCATGG 1 cut(s) 38
BspACI CCGC 3 cut(s) 96, 151, 528
BspANI GGCC 5 cut(s) 335, 377, 381, 579, 643
BspHI TCATGA 1 cut(s) 186
BspLI GGNNCC 2 cut(s) 234, 336
BspPI GGATC 3 cut(s) 227, 240, 483
BspT104I TTCGAA 1 cut(s) 120
BspTNI GGTCTC 1 cut(s) 288
BsrBI CCGCTC 1 cut(s) 151
BsrFI RCCGGY 1 cut(s) 377
BsrI ACTGG 1 cut(s) 632
BssAI RCCGGY 1 cut(s) 377
BssECI CCNNGG 1 cut(s) 38
BssMI GATC 5 cut(s) 183, 232, 475, 511, 649
BssSI CACGAG 1 cut(s) 479
BssT1I CCWWGG 1 cut(s) 38
Bst2BI CACGAG 1 cut(s) 479
Bst4CI ACNGT 2 cut(s) 158, 610
Bst6I CTCTTC 1 cut(s) 334
BstBI TTCGAA 1 cut(s) 120
BstC8I GCNNGC 2 cut(s) 367, 379
BstDEI CTNAG 2 cut(s) 570, 587
BstDSI CCRYGG 1 cut(s) 38
BstF5I GGATG 3 cut(s) 61, 72, 580
BstH2I RGCGCY 1 cut(s) 355
BstHHI GCGC 1 cut(s) 354
BstKTI GATC 5 cut(s) 186, 235, 478, 514, 652
BstMAI GTCTC 2 cut(s) 288, 599
BstMBI GATC 5 cut(s) 183, 232, 475, 511, 649
BstMCI CGRYCG 1 cut(s) 100
BstMWI GCNNNNNNNGC 4 cut(s) 93, 204, 254, 332
BstNSI RCATGY 1 cut(s) 544
BstSFI CTRYAG 1 cut(s) 384
BstV1I GCAGC 3 cut(s) 105, 341, 361
BstX2I RGATCY 1 cut(s) 232
BstXI CCANNNNNNTGG 1 cut(s) 639
BstYI RGATCY 1 cut(s) 232
BsuRI GGCC 5 cut(s) 335, 377, 381, 579, 643
BtgI CCRYGG 1 cut(s) 38
BtsCI GGATG 3 cut(s) 61, 72, 580
Cac8I GCNNGC 2 cut(s) 367, 379
CciI TCATGA 1 cut(s) 186
CfoI GCGC 1 cut(s) 354
Cfr10I RCCGGY 1 cut(s) 377
Cfr13I GGNCC 3 cut(s) 334, 380, 447
Csp6I GTAC 3 cut(s) 404, 622, 676
CviAII CATG 5 cut(s) 39, 187, 229, 444, 541
CviQI GTAC 3 cut(s) 404, 622, 676
DdeI CTNAG 2 cut(s) 570, 587
DpnI GATC 5 cut(s) 185, 234, 477, 513, 651
DpnII GATC 5 cut(s) 183, 232, 475, 511, 649
EaeI YGGCCR 2 cut(s) 375, 577
Eam1104I CTCTTC 1 cut(s) 334
EarI CTCTTC 1 cut(s) 334
Eco130I CCWWGG 1 cut(s) 38
Eco31I GGTCTC 1 cut(s) 288
Eco47I GGWCC 1 cut(s) 447
Eco47III AGCGCT 1 cut(s) 353
Eco57I CTGAAG 1 cut(s) 602
Eco88I CYCGRG 1 cut(s) 249
EcoT14I CCWWGG 1 cut(s) 38
ErhI CCWWGG 1 cut(s) 38
FaeI CATG 5 cut(s) 42, 190, 232, 447, 544
FaqI GGGAC 1 cut(s) 357
FatI CATG 5 cut(s) 38, 186, 228, 443, 540
FbaI TGATCA 2 cut(s) 183, 649
FblI GTMKAC 1 cut(s) 8
Fnu4HI GCNGC 4 cut(s) 94, 350, 355, 528
FokI GGATG 3 cut(s) 48, 59, 587
FseI GGCCGGCC 1 cut(s) 381
Fsp4HI GCNGC 4 cut(s) 94, 350, 355, 528
FspBI CTAG 1 cut(s) 662
GlaI GCGC 1 cut(s) 353
GluI GCNGC 4 cut(s) 94, 350, 355, 528
HaeII RGCGCY 1 cut(s) 355
HaeIII GGCC 5 cut(s) 335, 377, 381, 579, 643
HapII CCGG 1 cut(s) 378
HhaI GCGC 1 cut(s) 354
Hin1II CATG 5 cut(s) 42, 190, 232, 447, 544
Hin6I GCGC 1 cut(s) 352
HinP1I GCGC 1 cut(s) 352
HincII GTYRAC 2 cut(s) 9, 220
HindII GTYRAC 2 cut(s) 9, 220
HindIII AAGCTT 1 cut(s) 596
HinfI GANTC 3 cut(s) 5, 122, 252
HpaII CCGG 1 cut(s) 378
Hpy166II GTNNAC 2 cut(s) 9, 220
Hpy188I TCNGA 1 cut(s) 516
Hpy188III TCNNGA 4 cut(s) 187, 287, 410, 479
Hpy8I GTNNAC 2 cut(s) 9, 220
HpyAV CCTTC 1 cut(s) 76
HpyCH4III ACNGT 2 cut(s) 158, 610
HpyCH4IV ACGT 2 cut(s) 137, 406
HpyCH4V TGCA 2 cut(s) 396, 464
HpyF10VI GCNNNNNNNGC 4 cut(s) 93, 204, 254, 332
HpyF3I CTNAG 2 cut(s) 570, 587
HpySE526I ACGT 2 cut(s) 137, 406
Hsp92II CATG 5 cut(s) 42, 190, 232, 447, 544
HspAI GCGC 1 cut(s) 352
KroI GCCGGC 1 cut(s) 377
KroNI GCCGGC 1 cut(s) 379
Ksp22I TGATCA 2 cut(s) 183, 649
Kzo9I GATC 5 cut(s) 183, 232, 475, 511, 649
LmnI GCTCC 1 cut(s) 61
LpnPI CCDG 5 cut(s) 124, 351, 391, 396, 645
Lsp1109I GCAGC 3 cut(s) 105, 341, 361
LweI GCATC 1 cut(s) 43
MaeI CTAG 1 cut(s) 662
MaeII ACGT 2 cut(s) 137, 406
MaeIII GTNAC 3 cut(s) 138, 407, 610
MalI GATC 5 cut(s) 185, 234, 477, 513, 651
MbiI CCGCTC 1 cut(s) 151
MboI GATC 5 cut(s) 183, 232, 475, 511, 649
MboII GAAGA 5 cut(s) 8, 217, 301, 321, 547
MflI RGATCY 1 cut(s) 232
MluCI AATT 4 cut(s) 276, 507, 518, 637
MlyI GAGTC 2 cut(s) 14, 261
MnlI CCTC 9 cut(s) 30, 33, 36, 59, 69, 166, 337, 460, 466
MroNI GCCGGC 1 cut(s) 377
MseI TTAA 4 cut(s) 201, 456, 636, 688
MslI CAYNNNNRTG 1 cut(s) 545
MspA1I CMGCKG 1 cut(s) 96
MspI CCGG 1 cut(s) 378
MwoI GCNNNNNNNGC 4 cut(s) 93, 204, 254, 332
NaeI GCCGGC 1 cut(s) 379
NcoI CCATGG 1 cut(s) 38
NdeII GATC 5 cut(s) 183, 232, 475, 511, 649
NgoMIV GCCGGC 1 cut(s) 377
NlaIII CATG 5 cut(s) 42, 190, 232, 447, 544
NlaIV GGNNCC 2 cut(s) 234, 336
NmuCI GTSAC 1 cut(s) 407
NspI RCATGY 1 cut(s) 544
NspV TTCGAA 1 cut(s) 120
PagI TCATGA 1 cut(s) 186
PcsI WCGNNNNNNNCGW 1 cut(s) 97
PdiI GCCGGC 1 cut(s) 379
PfeI GAWTC 1 cut(s) 122
PkrI GCNGC 4 cut(s) 95, 351, 356, 529
PleI GAGTC 2 cut(s) 13, 260
PpsI GAGTC 2 cut(s) 13, 260
Psp1406I AACGTT 1 cut(s) 137
PspN4I GGNNCC 2 cut(s) 234, 336
PspPI GGNCC 3 cut(s) 334, 380, 447
PsuI RGATCY 1 cut(s) 232
RigI GGCCGGCC 1 cut(s) 381
RsaI GTAC 3 cut(s) 405, 623, 677
RsaNI GTAC 3 cut(s) 404, 622, 676
RseI CAYNNNNRTG 1 cut(s) 545
SalI GTCGAC 1 cut(s) 7
SaqAI TTAA 4 cut(s) 201, 456, 636, 688
SatI GCNGC 4 cut(s) 94, 350, 355, 528
Sau3AI GATC 5 cut(s) 183, 232, 475, 511, 649
Sau96I GGNCC 3 cut(s) 334, 380, 447
SchI GAGTC 2 cut(s) 14, 261
SetI ASST 9 cut(s) 106, 140, 209, 284, 409, 462, 471, 593, 600
SfaNI GCATC 1 cut(s) 43
SfcI CTRYAG 1 cut(s) 384
SfuI TTCGAA 1 cut(s) 120
SinI GGWCC 1 cut(s) 447
SmiMI CAYNNNNRTG 1 cut(s) 545
Sse9I AATT 4 cut(s) 276, 507, 518, 637
SsiI CCGC 3 cut(s) 96, 151, 528
SspMI CTAG 1 cut(s) 662
StyI CCWWGG 1 cut(s) 38
TaaI ACNGT 2 cut(s) 158, 610
TaiI ACGT 2 cut(s) 140, 409
TaqI TCGA 4 cut(s) 8, 51, 100, 120
TasI AATT 4 cut(s) 276, 507, 518, 637
TatI WGTACW 1 cut(s) 621
TauI GCSGC 1 cut(s) 530
TfiI GAWTC 1 cut(s) 122
Tru1I TTAA 4 cut(s) 201, 456, 636, 688
Tru9I TTAA 4 cut(s) 201, 456, 636, 688
TseFI GTSAC 1 cut(s) 407
TseI GCWGC 3 cut(s) 93, 349, 354
Tsp45I GTSAC 1 cut(s) 407
TspDTI ATGAA 1 cut(s) 217
TspGWI ACGGA 1 cut(s) 206
VpaK11BI GGWCC 1 cut(s) 447
XceI RCATGY 1 cut(s) 544
XmiI GTMKAC 1 cut(s) 8
XspI CTAG 1 cut(s) 662
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.