Rh3CG240300

Ubiquitin carboxyl-terminal hydrolase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
Physical Location & Seq
Reverse (-)
23028527 .. 23042333
13807 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG240300.1

Sequence Viewer

Length: 1419 bp
ATGGATGACCACAACAGGTGGTCCAAGCACCTTCCTGATGAATTGATTGAAATGATTGTGAAGCGTCTAACCCTAGTCGATTCAATCAGATTCGCTGCTGTGTGTCTTTCTTGGAGAAGTGTATCATCACAATGGTCTCAACGAGTGACCCGACTTCCATGGCTCTTGGATTCGACTGAGATTCTAGACTCAGAAACTGTGAATTATAGGCTCTACAGTCCAAGTGAAGACAGAGTCTACGACCTCAAGTTTCCAAGAGAAAATAATAAGTCGGATGCTTCAGATAGTTATGGGATACGTTGCTTGGGCTCTATTAATGGCTGGTTGATAATGTCTGAATGGACATTGAATAATATTTCGTATGATGATAAGTCCATCAATTATTTCTTGAACCCAATGACAGGTGATCGTATTAAGCTGCCCCAGCAGACCGAATTCATCCCAAAGACATCCGCAGCCTCTTCAGATCCAAGATGTTCTGATTGCATTGTTGCAATTGGAGAAGGGTCGAATTTGGTATTTTGGAGGCCAAGTAGTCATGAATTATGCCCTTGGGAAGGGCACCAAGATTTTCATTTACAATACGTTAAATTTCATGAGGATGGCAAGTTATACATAATAGGATTGGGTGATACGTGCTGTATACTTGTTGTTCTTGTTCTTGTTTCTGTTCTTGTTTTAGATCCCTTAAATCAATGTCAAGGCAAAGGCAAGTGTGAGAAAATTATTGCTTATAGGAAAATGACAATATCAGTTCCAGGGGATCCGTACAACGAAACCGCGCTGTCCTGGTCTCCATCATTTTTCTGGTCCTCCAAAGGTGAGTTTATATTGTTTTGGAGGTTTCGCAGAGGCGACTTTCCATTTCGAATGTTCAGGATAGATGAGAAAAGTGGTTATAATCCTATTTGGGTGAAATTGGAGAAGAATGATATTGCTGAAGACGAAGTAGTCTTTCTATGCTTCTTTCACAGCACCTCAATGTCAAAGTCGAAGTCATTTATGACAACCATAGACGAGGCTTTTCTTGGACTTCATTGCGGAAATTTTTTCATCTACGATCCCGATCTTTCGTTGACTAGTGACTTGAATATTTTAGATTGGATTCCAGAAGAAGAGAAAAACATGGGTTTTCATGACCGCTTGATTCATGTCTACCACTTTACAAAAGAGACTGCACAGAGCCAGATGTGGAAGTTTGCATTCTTGTCATTGGGTCGTCCCGAGTACCTGCAGGACTCCGATGTAGTTTCCAGTCGTATTCAGTGTGGGCTTAGCTTCAATGGTGACCATGCGAGCTCCGAACTTGACTCCAATGGTGAGGTCATGCACAGGTTAGAAGTTGGAACCACTTGTCCATCAATTGCAGTAGCAGATTTCCCTACACCTGCGTCCACACGAAAACCTCCAATTTTGTAA

Protein Analysis

472

Amino Acids

54.22

Weight (kDa)

5.3

Isoelectric Point (pI)

40.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 10 - 42 6e-06 F-box domain
Beta-prop_KIB1-4 PF03478 71 - 332 2e-17 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000142)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13532 FvH4_2g28870 FvH4_3g30930 FvH4_3g37281 FvH4_3g37300 FvH4_3g37301 FvH4_3g37301 FvH4_4g23711 FvH4_5g02330 FvH4_6g16960 FvH4_6g16971 FvH4_6g21291 FvH4_6g21331 FvH4_6g22212 FvH4_6g22332 FvH4_6g36920 FvH4_6g37552 FvH4_6g37591 FvH4_6g39721 FvH4_6g46020 FvH4_6g47001 FvH4_6g47002 FvH4_6g47130 FvH4_6g47140 FvH4_6g47161 FvH4_6g47170 FvH4_6g47190 FvH4_6g49120 FvH4_6g49280 FvH4_6g49281 FvH4_6g49640 FvH4_6g49640
malus_domestica MD03G1085600.v1.1 MD09G1027500.v1.1 MD09G1050100.v1.1
prunus_persica Prupe.1G004300_v2.0.a1 Prupe.1G016300_v2.0.a1 Prupe.1G019300_v2.0.a1 Prupe.3G239100_v2.0.a1 Prupe.3G291200_v2.0.a1
pyrus_communis pycom08g02840 pycom08g02860 pycom08g02870
rosa_chinensis RchiOBHm_Chr2g0153831 RchiOBHm_Chr2g0166171 RchiOBHm_Chr2g0166201 RchiOBHm_Chr3g0476221 RchiOBHm_Chr4g0430971 RchiOBHm_Chr5g0067081 RchiOBHm_Chr7g0197821
rosa_laevigata RLG00000001284 RLG00000006996 RLG00000012710 RLG00000019299 RLG00000020285 RLG00000020444 RLG00000020466 RLG00000020591 RLG00000020665 RLG00000020730 RLG00000020732 RLG00000021449 RLG00000021592 RLG00000021593 RLG00000021594 RLG00000021596 RLG00000021597 RLG00000021801 RLG00000023534 RLG00000023538 RLG00000023693 RLG00000023694 RLG00000023699 RLG00000024196 RLG00000024214 RLG00000024220 RLG00000024244 RLG00000024608 RLG00000024612 RLG00000035157 RLG00000035906
rosa_multiflora Rmu_co8282815.1_g000001 Rmu_co8380495.1_g000001 Rmu_co8381111.1_g000001 Rmu_co8460513.1_g000001 Rmu_co8481947.1_g000001 Rmu_co8487937.1_g000001 Rmu_sc0000151.1_g000017 Rmu_sc0001427.1_g000003 Rmu_sc0001427.1_g000006 Rmu_sc0002611.1_g000008 Rmu_sc0003887.1_g000018 Rmu_sc0003887.1_g000019 Rmu_sc0003887.1_g000021 Rmu_sc0004119.1_g000004 Rmu_sc0004329.1_g000003 Rmu_sc0004485.1_g000024 Rmu_sc0005290.1_g000001 Rmu_sc0005609.1_g000006 Rmu_sc0006187.1_g000018 Rmu_sc0006218.1_g000032 Rmu_sc0006218.1_g000033 Rmu_sc0007150.1_g000003 Rmu_sc0007154.1_g000004 Rmu_sc0007154.1_g000005 Rmu_sc0007154.1_g000007 Rmu_sc0008314.1_g000012 Rmu_sc0010073.1_g000023 Rmu_sc0010073.1_g000025 Rmu_sc0011216.1_g000008 Rmu_sc0012445.1_g000005 Rmu_sc0013571.1_g000002 Rmu_sc0018648.1_g000002 Rmu_sc0020961.1_g000002 Rmu_sc0020961.1_g000003 Rmu_sc0023710.1_g000001 Rmu_sc0031310.1_g000008 Rmu_sc0033940.1_g000001 Rmu_sc0035493.1_g000001 Rmu_sc0039285.1_g000001
rosa_roxburghii Rroxscaffold_1G00014000 Rroxscaffold_1G00014020 Rroxscaffold_2G00082760 Rroxscaffold_2G00085090 Rroxscaffold_2G00085100 Rroxscaffold_2G00085140 Rroxscaffold_2G00086670 Rroxscaffold_2G00086680 Rroxscaffold_2G00098190 Rroxscaffold_2G00099270 Rroxscaffold_3G00227460 Rroxscaffold_3G00258190 Rroxscaffold_3G00259780 Rroxscaffold_6G00402940 Rroxscaffold_6G00410200 Rroxscaffold_6G00410210 Rroxscaffold_7G00184320
rosa_rugosa Rorug02G0416100 Rorug02G0416200 Rorug02G0520900 Rorug02G0521200 Rorug02G0521300 Rorug02G0534600 Rorug03G0116300 Rorug03G0162900 Rorug03G0162900 Rorug04G0241400 Rorug05G0380900 Rorug07G0043800
rosa_samantha Rh1AG115300 Rh2BG483700 Rh2BG509900 Rh2BG515700 Rh2BG515800 Rh2BG586500 Rh2BG586600 Rh2BG586700 Rh2BG598800 Rh2BG598900 Rh2BG599100 Rh2BG618400 Rh2BG630500 Rh2CG457400 Rh2CG484900 Rh3AG165300 Rh3AG212900 Rh3AG213300 Rh3BG145800 Rh3BG146100 Rh3BG235300 Rh3BG246500 Rh3BG247000 Rh3BG247100 Rh3CG240300 Rh3CG240800 Rh3CG240900 Rh3CG259600 Rh3DG147000 Rh3DG184800 Rh3DG184900 Rh3DG185000 Rh3DG239500 Rh3DG240100 Rh3DG240200 Rh3DG255800 Rh5BG458500 Rh5CG480400 Rh7BG170400 Rh7BG407900 Rh7CG176900
rosa_wichuraiana Rw2G038990 Rw2G041550 Rw2G047660 Rw2G048940 Rw4G026370 Rw6G008730 Rw7G014600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 900
AarI CACCTGC 1 cut(s) 1396
AasI GACNNNNNNGTC 1 cut(s) 950
Acc36I ACCTGC 2 cut(s) 1239, 1396
AccB1I GGYRCC 1 cut(s) 561
AccI GTMKAC 3 cut(s) 237, 643, 1155
AccII CGCG 1 cut(s) 782
AciI CCGC 4 cut(s) 453, 780, 1041, 1141
AclWI GGATC 5 cut(s) 461, 677, 758, 771, 1055
AcsI RAATTY 4 cut(s) 434, 511, 590, 1045
AcuI CTGAAG 3 cut(s) 264, 447, 960
AfaI GTAC 2 cut(s) 770, 1229
AfiI CCNNNNNNNGG 2 cut(s) 401, 557
AgsI TTSAA 6 cut(s) 50, 84, 349, 391, 1090, 1282
AhlI ACTAGT 1 cut(s) 1079
AjnI CCWGG 2 cut(s) 757, 788
AloI GAACNNNNNNTCC 2 cut(s) 1339, 1371
AluBI AGCT 3 cut(s) 418, 1278, 1299
AluI AGCT 3 cut(s) 418, 1278, 1299
Alw21I GWGCWC 1 cut(s) 1301
Alw26I GTCTC 3 cut(s) 141, 798, 1166
AlwI GGATC 5 cut(s) 461, 677, 758, 771, 1055
AlwNI CAGNNNCTG 1 cut(s) 197
Ama87I CYCGRG 1 cut(s) 1223
AoxI GGCC 1 cut(s) 527
ApeKI GCWGC 3 cut(s) 95, 418, 455
ApoI RAATTY 4 cut(s) 434, 511, 590, 1045
ArsI GACNNNNNNTTYG 2 cut(s) 980, 1012
AseI ATTAAT 1 cut(s) 315
AspLEI GCGC 1 cut(s) 784
AspS9I GGNCC 2 cut(s) 21, 810
AsuHPI GGTGA 6 cut(s) 416, 641, 833, 925, 1298, 1331
AsuII TTCGAA 1 cut(s) 868
AvaI CYCGRG 1 cut(s) 1223
AvaII GGWCC 2 cut(s) 21, 810
BaeGI GKGCMC 1 cut(s) 564
BamHI GGATCC 1 cut(s) 763
BanI GGYRCC 1 cut(s) 561
BanII GRGCYC 2 cut(s) 311, 1301
BbsI GAAGAC 2 cut(s) 234, 948
Bbv12I GWGCWC 1 cut(s) 1301
BbvI GCAGC 3 cut(s) 82, 405, 467
BccI CCATC 4 cut(s) 383, 596, 805, 1366
BciT130I CCWGG 2 cut(s) 759, 790
BciVI GTATCC 1 cut(s) 288
BcoDI GTCTC 3 cut(s) 141, 798, 1166
BcuI ACTAGT 1 cut(s) 1079
BfaI CTAG 3 cut(s) 74, 185, 1080
BfmI CTRYAG 2 cut(s) 214, 1232
BfuAI ACCTGC 2 cut(s) 1239, 1396
BfuI GTATCC 1 cut(s) 288
BisI GCNGC 3 cut(s) 96, 419, 456
BlpI GCTNAGC 1 cut(s) 1274
BlsI GCNGC 3 cut(s) 97, 420, 457
Bme1390I CCNGG 2 cut(s) 759, 790
Bme18I GGWCC 2 cut(s) 21, 810
BmeT110I CYCGRG 1 cut(s) 1223
BmgT120I GGNCC 2 cut(s) 21, 810
BmiI GGNNCC 3 cut(s) 563, 765, 1348
BmrFI CCNGG 2 cut(s) 759, 790
BmsI GCATC 1 cut(s) 265
BpiI GAAGAC 2 cut(s) 234, 948
Bpu1102I GCTNAGC 1 cut(s) 1274
Bpu14I TTCGAA 1 cut(s) 868
BpuEI CTTGAG 1 cut(s) 230
BsaAI YACGTR 1 cut(s) 636
BsaBI GATNNNNATC 1 cut(s) 1065
BsaI GGTCTC 2 cut(s) 141, 798
BsaJI CCNNGG 3 cut(s) 158, 551, 758
BsaXI ACNNNNNCTCC 2 cut(s) 517, 547
Bsc4I CCNNNNNNNGG 2 cut(s) 401, 557
Bse1I ACTGG 1 cut(s) 1254
Bse3DI GCAATG 1 cut(s) 1036
Bse8I GATNNNNATC 1 cut(s) 1065
BseBI CCWGG 2 cut(s) 759, 790
BseDI CCNNGG 3 cut(s) 158, 551, 758
BseGI GGATG 5 cut(s) 10, 280, 438, 449, 607
BseJI GATNNNNATC 1 cut(s) 1065
BseLI CCNNNNNNNGG 2 cut(s) 401, 557
BseMI GCAATG 1 cut(s) 1036
BseMII CTCAG 2 cut(s) 168, 204
BseNI ACTGG 1 cut(s) 1254
BseSI GKGCMC 1 cut(s) 564
BseXI GCAGC 3 cut(s) 82, 405, 467
BseYI CCCAGC 1 cut(s) 423
BsgI GTGCAG 1 cut(s) 1161
Bsh1236I CGCG 1 cut(s) 782
BshFI GGCC 1 cut(s) 529
BshNI GGYRCC 1 cut(s) 561
BsiHKAI GWGCWC 1 cut(s) 1301
BsiHKCI CYCGRG 1 cut(s) 1223
BslFI GGGAC 1 cut(s) 1206
BslI CCNNNNNNNGG 2 cut(s) 401, 557
BsmAI GTCTC 3 cut(s) 141, 798, 1166
BsmFI GGGAC 1 cut(s) 1206
BsmI GAATGC 1 cut(s) 1202
BsnI GGCC 1 cut(s) 529
Bso31I GGTCTC 2 cut(s) 141, 798
BsoBI CYCGRG 1 cut(s) 1223
Bsp119I TTCGAA 1 cut(s) 868
Bsp1286I GDGCHC 3 cut(s) 311, 564, 1301
Bsp143I GATC 6 cut(s) 406, 466, 682, 763, 1060, 1066
Bsp1720I GCTNAGC 1 cut(s) 1274
Bsp19I CCATGG 1 cut(s) 158
BspACI CCGC 4 cut(s) 453, 780, 1041, 1141
BspANI GGCC 1 cut(s) 529
BspCNI CTCAG 2 cut(s) 169, 203
BspFNI CGCG 1 cut(s) 782
BspHI TCATGA 3 cut(s) 538, 595, 1135
BspLI GGNNCC 3 cut(s) 563, 765, 1348
BspMAI CTGCAG 1 cut(s) 1236
BspMI ACCTGC 2 cut(s) 1239, 1396
BspPI GGATC 5 cut(s) 461, 677, 758, 771, 1055
BspT104I TTCGAA 1 cut(s) 868
BspT107I GGYRCC 1 cut(s) 561
BspTNI GGTCTC 2 cut(s) 141, 798
BsrDI GCAATG 1 cut(s) 1036
BsrI ACTGG 1 cut(s) 1254
BssECI CCNNGG 3 cut(s) 158, 551, 758
BssMI GATC 6 cut(s) 406, 466, 682, 763, 1060, 1066
BssNAI GTATAC 1 cut(s) 644
BssT1I CCWWGG 2 cut(s) 158, 551
Bst1107I GTATAC 1 cut(s) 644
Bst2UI CCWGG 2 cut(s) 759, 790
Bst4CI ACNGT 2 cut(s) 199, 218
Bst6I CTCTTC 2 cut(s) 466, 1110
BstBAI YACGTR 1 cut(s) 636
BstBI TTCGAA 1 cut(s) 868
BstC8I GCNNGC 1 cut(s) 1297
BstDEI CTNAG 3 cut(s) 177, 190, 1274
BstDSI CCRYGG 1 cut(s) 158
BstEII GGTNACC 1 cut(s) 1286
BstENI CCTNNNNNAGG 1 cut(s) 555
BstF5I GGATG 5 cut(s) 10, 280, 438, 449, 607
BstFNI CGCG 1 cut(s) 782
BstHHI GCGC 1 cut(s) 784
BstKTI GATC 6 cut(s) 409, 469, 685, 766, 1063, 1069
BstMAI GTCTC 3 cut(s) 141, 798, 1166
BstMBI GATC 6 cut(s) 406, 466, 682, 763, 1060, 1066
BstMWI GCNNNNNNNGC 1 cut(s) 424
BstNI CCWGG 2 cut(s) 759, 790
BstPI GGTNACC 1 cut(s) 1286
BstSCI CCNGG 2 cut(s) 757, 788
BstSFI CTRYAG 2 cut(s) 214, 1232
BstSLI GKGCMC 1 cut(s) 564
BstUI CGCG 1 cut(s) 782
BstV1I GCAGC 3 cut(s) 82, 405, 467
BstV2I GAAGAC 2 cut(s) 234, 948
BstX2I RGATCY 3 cut(s) 466, 682, 763
BstYI RGATCY 3 cut(s) 466, 682, 763
BstZ17I GTATAC 1 cut(s) 644
BsuI GTATCC 1 cut(s) 288
BsuRI GGCC 1 cut(s) 529
BtgI CCRYGG 1 cut(s) 158
BtsCI GGATG 5 cut(s) 10, 280, 438, 449, 607
BtsIMutI CAGTG 1 cut(s) 1271
BveI ACCTGC 2 cut(s) 1239, 1396
Cac8I GCNNGC 1 cut(s) 1297
CaiI CAGNNNCTG 1 cut(s) 197
CciI TCATGA 3 cut(s) 538, 595, 1135
CfoI GCGC 1 cut(s) 784
Cfr13I GGNCC 2 cut(s) 21, 810
CseI GACGC 2 cut(s) 53, 1380
Csp6I GTAC 2 cut(s) 769, 1228
CviAII CATG 8 cut(s) 159, 539, 596, 1126, 1136, 1151, 1292, 1327
CviQI GTAC 2 cut(s) 769, 1228
DdeI CTNAG 3 cut(s) 177, 190, 1274
DpnI GATC 6 cut(s) 408, 468, 684, 765, 1062, 1068
DpnII GATC 6 cut(s) 406, 466, 682, 763, 1060, 1066
DrdI GACNNNNNNGTC 1 cut(s) 950
DseDI GACNNNNNNGTC 1 cut(s) 950
Eam1104I CTCTTC 2 cut(s) 466, 1110
EarI CTCTTC 2 cut(s) 466, 1110
Ecl136II GAGCTC 1 cut(s) 1299
Eco130I CCWWGG 2 cut(s) 158, 551
Eco24I GRGCYC 2 cut(s) 311, 1301
Eco31I GGTCTC 2 cut(s) 141, 798
Eco47I GGWCC 2 cut(s) 21, 810
Eco53kI GAGCTC 1 cut(s) 1299
Eco57I CTGAAG 3 cut(s) 264, 447, 960
Eco88I CYCGRG 1 cut(s) 1223
Eco91I GGTNACC 1 cut(s) 1286
EcoICRI GAGCTC 1 cut(s) 1299
EcoNI CCTNNNNNAGG 1 cut(s) 555
EcoO65I GGTNACC 1 cut(s) 1286
EcoRI GAATTC 1 cut(s) 434
EcoRII CCWGG 2 cut(s) 757, 788
EcoT14I CCWWGG 2 cut(s) 158, 551
EcoT38I GRGCYC 2 cut(s) 311, 1301
ErhI CCWWGG 2 cut(s) 158, 551
FaeI CATG 8 cut(s) 162, 542, 599, 1129, 1139, 1154, 1295, 1330
FaqI GGGAC 1 cut(s) 1206
FatI CATG 8 cut(s) 158, 538, 595, 1125, 1135, 1150, 1291, 1326
FblI GTMKAC 3 cut(s) 237, 643, 1155
Fnu4HI GCNGC 3 cut(s) 96, 419, 456
FokI GGATG 5 cut(s) 17, 287, 425, 436, 614
FriOI GRGCYC 2 cut(s) 311, 1301
Fsp4HI GCNGC 3 cut(s) 96, 419, 456
FspBI CTAG 3 cut(s) 74, 185, 1080
GlaI GCGC 1 cut(s) 783
GluI GCNGC 3 cut(s) 96, 419, 456
GsaI CCCAGC 1 cut(s) 427
HaeIII GGCC 1 cut(s) 529
HgaI GACGC 2 cut(s) 53, 1380
HhaI GCGC 1 cut(s) 784
Hin1II CATG 8 cut(s) 162, 542, 599, 1129, 1139, 1154, 1295, 1330
Hin6I GCGC 1 cut(s) 782
HinP1I GCGC 1 cut(s) 782
HincII GTYRAC 1 cut(s) 1077
HindII GTYRAC 1 cut(s) 1077
HphI GGTGA 6 cut(s) 416, 641, 833, 925, 1298, 1331
Hpy166II GTNNAC 5 cut(s) 238, 644, 1077, 1156, 1395
Hpy188I TCNGA 9 cut(s) 89, 193, 274, 283, 337, 466, 481, 1243, 1303
Hpy8I GTNNAC 5 cut(s) 238, 644, 1077, 1156, 1395
HpyAV CCTTC 3 cut(s) 41, 497, 551
HpyCH4III ACNGT 2 cut(s) 199, 218
HpyCH4IV ACGT 3 cut(s) 298, 585, 635
HpyCH4V TGCA 7 cut(s) 486, 494, 1178, 1202, 1234, 1330, 1367
HpyF10VI GCNNNNNNNGC 1 cut(s) 424
HpyF3I CTNAG 3 cut(s) 177, 190, 1274
HpySE526I ACGT 3 cut(s) 298, 585, 635
Hsp92II CATG 8 cut(s) 162, 542, 599, 1129, 1139, 1154, 1295, 1330
HspAI GCGC 1 cut(s) 782
Kzo9I GATC 6 cut(s) 406, 466, 682, 763, 1060, 1066
LmnI GCTCC 1 cut(s) 1304
Lsp1109I GCAGC 3 cut(s) 82, 405, 467
LweI GCATC 1 cut(s) 265
MaeI CTAG 3 cut(s) 74, 185, 1080
MaeII ACGT 3 cut(s) 298, 585, 635
MaeIII GTNAC 3 cut(s) 145, 1082, 1286
MalI GATC 6 cut(s) 408, 468, 684, 765, 1062, 1068
MboI GATC 6 cut(s) 406, 466, 682, 763, 1060, 1066
MboII GAAGA 6 cut(s) 239, 453, 937, 953, 1124, 1127
MfeI CAATTG 2 cut(s) 495, 1362
MflI RGATCY 3 cut(s) 466, 682, 763
MhlI GDGCHC 3 cut(s) 311, 564, 1301
MlyI GAGTC 4 cut(s) 182, 243, 1232, 1304
MmeI TCCRAC 2 cut(s) 252, 1324
MseI TTAA 4 cut(s) 315, 414, 588, 689
MslI CAYNNNNRTG 3 cut(s) 130, 600, 980
MspR9I CCNGG 2 cut(s) 759, 790
MunI CAATTG 2 cut(s) 495, 1362
Mva1269I GAATGC 1 cut(s) 1202
MvaI CCWGG 2 cut(s) 759, 790
MvnI CGCG 1 cut(s) 782
MwoI GCNNNNNNNGC 1 cut(s) 424
NcoI CCATGG 1 cut(s) 158
NdeII GATC 6 cut(s) 406, 466, 682, 763, 1060, 1066
NlaIII CATG 8 cut(s) 162, 542, 599, 1129, 1139, 1154, 1295, 1330
NlaIV GGNNCC 3 cut(s) 563, 765, 1348
NmuCI GTSAC 3 cut(s) 145, 1082, 1286
NspV TTCGAA 1 cut(s) 868
PagI TCATGA 3 cut(s) 538, 595, 1135
PaqCI CACCTGC 1 cut(s) 1396
PcsI WCGNNNNNNNCGW 1 cut(s) 148
PctI GAATGC 1 cut(s) 1202
PfeI GAWTC 6 cut(s) 80, 90, 170, 181, 1105, 1147
PflFI GACNNNGTC 1 cut(s) 233
PkrI GCNGC 3 cut(s) 97, 420, 457
PleI GAGTC 4 cut(s) 182, 242, 1232, 1304
PpsI GAGTC 4 cut(s) 182, 242, 1232, 1304
Ppu21I YACGTR 1 cut(s) 636
PshBI ATTAAT 1 cut(s) 315
PsiI TTATAA 1 cut(s) 900
Psp124BI GAGCTC 1 cut(s) 1301
Psp6I CCWGG 2 cut(s) 757, 788
PspEI GGTNACC 1 cut(s) 1286
PspFI CCCAGC 1 cut(s) 423
PspGI CCWGG 2 cut(s) 757, 788
PspN4I GGNNCC 3 cut(s) 563, 765, 1348
PspPI GGNCC 2 cut(s) 21, 810
PstI CTGCAG 1 cut(s) 1236
PstNI CAGNNNCTG 1 cut(s) 197
PsuI RGATCY 3 cut(s) 466, 682, 763
PsyI GACNNNGTC 1 cut(s) 233
RsaI GTAC 2 cut(s) 770, 1229
RsaNI GTAC 2 cut(s) 769, 1228
RseI CAYNNNNRTG 3 cut(s) 130, 600, 980
SacI GAGCTC 1 cut(s) 1301
SaqAI TTAA 4 cut(s) 315, 414, 588, 689
SatI GCNGC 3 cut(s) 96, 419, 456
Sau3AI GATC 6 cut(s) 406, 466, 682, 763, 1060, 1066
Sau96I GGNCC 2 cut(s) 21, 810
SbfI CCTGCAGG 1 cut(s) 1236
SchI GAGTC 4 cut(s) 182, 243, 1232, 1304
ScrFI CCNGG 2 cut(s) 759, 790
SdaI CCTGCAGG 1 cut(s) 1236
SduI GDGCHC 3 cut(s) 311, 564, 1301
SfaNI GCATC 1 cut(s) 265
SfcI CTRYAG 2 cut(s) 214, 1232
SfuI TTCGAA 1 cut(s) 868
SinI GGWCC 2 cut(s) 21, 810
SmiMI CAYNNNNRTG 3 cut(s) 130, 600, 980
SmlI CTYRAG 1 cut(s) 245
SmoI CTYRAG 1 cut(s) 245
SpeI ACTAGT 1 cut(s) 1079
Sse8387I CCTGCAGG 1 cut(s) 1236
SsiI CCGC 4 cut(s) 453, 780, 1041, 1141
SspI AATATT 2 cut(s) 355, 1093
SspMI CTAG 3 cut(s) 74, 185, 1080
SstI GAGCTC 1 cut(s) 1301
StyD4I CCNGG 2 cut(s) 757, 788
StyI CCWWGG 2 cut(s) 158, 551
TaaI ACNGT 2 cut(s) 199, 218
TaiI ACGT 3 cut(s) 301, 588, 638
TaqI TCGA 5 cut(s) 78, 173, 509, 868, 992
TaqII GACCGA 1 cut(s) 446
TfiI GAWTC 6 cut(s) 80, 90, 170, 181, 1105, 1147
Tru1I TTAA 4 cut(s) 315, 414, 588, 689
Tru9I TTAA 4 cut(s) 315, 414, 588, 689
TscAI CASTG 1 cut(s) 1271
TseFI GTSAC 3 cut(s) 145, 1082, 1286
TseI GCWGC 3 cut(s) 95, 418, 455
Tsp45I GTSAC 3 cut(s) 145, 1082, 1286
TspDTI ATGAA 9 cut(s) 54, 427, 555, 563, 584, 1025, 1042, 1124, 1139
TspGWI ACGGA 1 cut(s) 756
TspRI CASTG 1 cut(s) 1271
Tth111I GACNNNGTC 1 cut(s) 233
VpaK11BI GGWCC 2 cut(s) 21, 810
VspI ATTAAT 1 cut(s) 315
XagI CCTNNNNNAGG 1 cut(s) 555
XapI RAATTY 4 cut(s) 434, 511, 590, 1045
XbaI TCTAGA 1 cut(s) 184
XcmI CCANNNNNNNNNTGG 1 cut(s) 804
XmiI GTMKAC 3 cut(s) 237, 643, 1155
XspI CTAG 3 cut(s) 74, 185, 1080
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.