Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0009299

Physical Location & Seq

Genomic Coordinates Forward (+)

11517676 .. 11518681

Gene Structure 1006 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g09540.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGAATCATTGCGTCTCTTCCCACATCCTCCTGTTTTGATAAGAAGAGCTCAAGTAGCTGACGTGCTCCCGGGAAATTACAAAGTCAATGCTGGTCAAGATATTATGATATCAGTATACAATATCCATCGTTCTTCAAAGGTGTGGGAGAGAGCAGAAGACTATGTACCTGAAAGATTTGATCTTGAAGGCTCCGTACCTAATGAAACAAACACAGATTTCAGGTTCATTCCATTCAGCGGAGGGCCACGGAAGTGTGTTGGTGATCAATTTGCTCTGCTGGAAGCGACTGTTGCTCTCACAATCTTTATTCAGAACCTGAACTTTGAGCTGGTTCCGGATCAGAAAATTAGCATGACGACCGGAGCAACAATTCACACCACAAATGGTTTGTACATGAAGTTAAGCCAACGACAGGCAAAATCTGCATTCGCTACATCATCCTCGTCTTCGTCCGCCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009974 GO:0009987 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016491 GO:0016705 GO:0031967 GO:0031975 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0055114 GO:0071704 GO:0072374 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

155

Amino Acids

17.1

Weight (kDa)

6.83

Isoelectric Point (pI)

37.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009299)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53130
fragaria_vesca	FvH4_6g17140 FvH4_6g17140 FvH4_6g17140 FvH4_6g17140
malus_domestica	MD14G1097800.v1.1
prunus_persica	Prupe.7G123500_v2.0.a1
pyrus_communis	pycom12g10190 pycom14g09530 pycom14g09540
rosa_chinensis	RchiOBHm_Chr3g0471231
rosa_laevigata	RLG00000024195
rosa_multiflora	Rmu_sc0004870.1_g000001 Rmu_sc0023334.1_g000001 Rmu_sc0035386.1_g000001
rosa_roxburghii	Rroxscaffold_6G00410190
rosa_rugosa	Rorug03G0116300
rosa_samantha	Rh3AG165500 Rh3BG191000 Rh3CG181300 Rh3DG184700
rosa_wichuraiana	Rw3G015590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	117
AccIII	TCCGGA	1 cut(s)	337
AciI	CCGC	2 cut(s)	240, 456
AclWI	GGATC	1 cut(s)	348
AfaI	GTAC	3 cut(s)	168, 198, 395
AfiI	CCNNNNNNNGG	2 cut(s)	239, 415
AgsI	TTSAA	2 cut(s)	138, 188
AjiI	CACGTC	1 cut(s)	64
AleI	CACNNNNGTG	1 cut(s)	253
AluBI	AGCT	3 cut(s)	50, 59, 331
AluI	AGCT	3 cut(s)	50, 59, 331
Alw21I	GWGCWC	2 cut(s)	52, 69
Alw26I	GTCTC	1 cut(s)	20
AlwI	GGATC	1 cut(s)	348
AlwNI	CAGNNNCTG	1 cut(s)	319
Ama87I	CYCGRG	1 cut(s)	70
Aor13HI	TCCGGA	1 cut(s)	337
AoxI	GGCC	1 cut(s)	245
AspS9I	GGNCC	1 cut(s)	245
AsuC2I	CCSGG	2 cut(s)	71, 72
AsuHPI	GGTGA	1 cut(s)	275
AvaI	CYCGRG	1 cut(s)	70
BanII	GRGCYC	1 cut(s)	52
BarI	GAAGNNNNNNTAC	4 cut(s)	150, 180, 182, 212
BbsI	GAAGAC	2 cut(s)	165, 441
Bbv12I	GWGCWC	2 cut(s)	52, 69
BccI	CCATC	1 cut(s)	135
BclI	TGATCA	1 cut(s)	265
BcnI	CCSGG	2 cut(s)	71, 72
BcoDI	GTCTC	1 cut(s)	20
Bme1390I	CCNGG	2 cut(s)	71, 72
BmeT110I	CYCGRG	1 cut(s)	70
BmgBI	CACGTC	1 cut(s)	64
BmgT120I	GGNCC	1 cut(s)	245
BmiI	GGNNCC	2 cut(s)	193, 336
BmrFI	CCNGG	2 cut(s)	71, 72
BpiI	GAAGAC	2 cut(s)	165, 441
BpuEI	CTTGAG	1 cut(s)	36
BpuMI	CCSGG	2 cut(s)	71, 72
BsaJI	CCNNGG	2 cut(s)	70, 248
BsaWI	WCCGGW	2 cut(s)	337, 362
Bsc4I	CCNNNNNNNGG	2 cut(s)	239, 415
Bse3DI	GCAATG	1 cut(s)	8
BseAI	TCCGGA	1 cut(s)	337
BseDI	CCNNGG	2 cut(s)	70, 248
BseGI	GGATG	2 cut(s)	25, 440
BseLI	CCNNNNNNNGG	2 cut(s)	239, 415
BseMI	GCAATG	1 cut(s)	8
Bsh1285I	CGRYCG	1 cut(s)	363
BshFI	GGCC	1 cut(s)	247
BsiEI	CGRYCG	1 cut(s)	363
BsiHKAI	GWGCWC	2 cut(s)	52, 69
BsiHKCI	CYCGRG	1 cut(s)	70
BsiSI	CCGG	3 cut(s)	71, 338, 363
BslI	CCNNNNNNNGG	2 cut(s)	239, 415
BsmAI	GTCTC	1 cut(s)	20
BsmBI	CGTCTC	1 cut(s)	20
BsmI	GAATGC	1 cut(s)	428
BsnI	GGCC	1 cut(s)	247
BsoBI	CYCGRG	1 cut(s)	70
Bsp1286I	GDGCHC	2 cut(s)	52, 69
Bsp13I	TCCGGA	1 cut(s)	337
Bsp1407I	TGTACA	1 cut(s)	393
Bsp143I	GATC	3 cut(s)	181, 265, 340
BspACI	CCGC	2 cut(s)	240, 456
BspANI	GGCC	1 cut(s)	247
BspEI	TCCGGA	1 cut(s)	337
BspLI	GGNNCC	2 cut(s)	193, 336
BspPI	GGATC	1 cut(s)	348
BspQI	GCTCTTC	1 cut(s)	40
BsrDI	GCAATG	1 cut(s)	8
BsrGI	TGTACA	1 cut(s)	393
BssECI	CCNNGG	2 cut(s)	70, 248
BssMI	GATC	3 cut(s)	181, 265, 340
BssNAI	GTATAC	1 cut(s)	118
Bst1107I	GTATAC	1 cut(s)	118
Bst4CI	ACNGT	1 cut(s)	292
Bst6I	CTCTTC	2 cut(s)	23, 40
BstAPI	GCANNNNNTGC	1 cut(s)	425
BstAUI	TGTACA	1 cut(s)	393
BstDEI	CTNAG	1 cut(s)	462
BstDSI	CCRYGG	1 cut(s)	248
BstF5I	GGATG	2 cut(s)	25, 440
BstKTI	GATC	3 cut(s)	184, 268, 343
BstMAI	GTCTC	1 cut(s)	20
BstMBI	GATC	3 cut(s)	181, 265, 340
BstMCI	CGRYCG	1 cut(s)	363
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 293, 425
BstSCI	CCNGG	2 cut(s)	69, 70
BstV2I	GAAGAC	2 cut(s)	165, 441
BstZ17I	GTATAC	1 cut(s)	118
BsuRI	GGCC	1 cut(s)	247
BtgI	CCRYGG	1 cut(s)	248
BtrI	CACGTC	1 cut(s)	64
BtsCI	GGATG	2 cut(s)	25, 440
CaiI	CAGNNNCTG	1 cut(s)	319
Cfr13I	GGNCC	1 cut(s)	245
Cfr9I	CCCGGG	1 cut(s)	70
CseI	GACGC	1 cut(s)	2
Csp6I	GTAC	3 cut(s)	167, 197, 394
CviAII	CATG	2 cut(s)	355, 397
CviJI	RGCY	6 cut(s)	50, 59, 192, 247, 331, 408
CviKI_1	RGCY	6 cut(s)	50, 59, 192, 247, 331, 408
CviQI	GTAC	3 cut(s)	167, 197, 394
DdeI	CTNAG	1 cut(s)	462
DpnI	GATC	3 cut(s)	183, 267, 342
DpnII	GATC	3 cut(s)	181, 265, 340
Eam1104I	CTCTTC	2 cut(s)	23, 40
EarI	CTCTTC	2 cut(s)	23, 40
EciI	GGCGGA	1 cut(s)	445
Ecl136II	GAGCTC	1 cut(s)	50
Eco24I	GRGCYC	1 cut(s)	52
Eco32I	GATATC	1 cut(s)	111
Eco53kI	GAGCTC	1 cut(s)	50
Eco88I	CYCGRG	1 cut(s)	70
EcoICRI	GAGCTC	1 cut(s)	50
EcoRV	GATATC	1 cut(s)	111
EcoT38I	GRGCYC	1 cut(s)	52
Esp3I	CGTCTC	1 cut(s)	20
FaeI	CATG	2 cut(s)	358, 400
FaiI	YATR	5 cut(s)	107, 118, 165, 356, 398
FatI	CATG	2 cut(s)	354, 396
FbaI	TGATCA	1 cut(s)	265
FblI	GTMKAC	1 cut(s)	117
FokI	GGATG	2 cut(s)	12, 427
FriOI	GRGCYC	1 cut(s)	52
HaeIII	GGCC	1 cut(s)	247
HapII	CCGG	3 cut(s)	71, 338, 363
HgaI	GACGC	1 cut(s)	2
Hin1II	CATG	2 cut(s)	358, 400
HinfI	GANTC	1 cut(s)	5
HpaII	CCGG	3 cut(s)	71, 338, 363
HphI	GGTGA	1 cut(s)	275
Hpy166II	GTNNAC	1 cut(s)	118
Hpy188I	TCNGA	2 cut(s)	315, 345
Hpy188III	TCNNGA	3 cut(s)	98, 185, 338
Hpy8I	GTNNAC	1 cut(s)	118
HpyAV	CCTTC	1 cut(s)	182
HpyCH4III	ACNGT	1 cut(s)	292
HpyCH4IV	ACGT	1 cut(s)	63
HpyCH4V	TGCA	1 cut(s)	428
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 293, 425
HpyF3I	CTNAG	1 cut(s)	462
HpySE526I	ACGT	1 cut(s)	63
Hsp92II	CATG	2 cut(s)	358, 400
Kpn2I	TCCGGA	1 cut(s)	337
Ksp22I	TGATCA	1 cut(s)	265
Kzo9I	GATC	3 cut(s)	181, 265, 340
LguI	GCTCTTC	1 cut(s)	40
LmnI	GCTCC	3 cut(s)	72, 197, 365
MaeII	ACGT	1 cut(s)	63
MalI	GATC	3 cut(s)	183, 267, 342
MboI	GATC	3 cut(s)	181, 265, 340
MboII	GAAGA	5 cut(s)	10, 57, 126, 170, 441
MhlI	GDGCHC	2 cut(s)	52, 69
MluCI	AATT	4 cut(s)	76, 269, 348, 372
MnlI	CCTC	3 cut(s)	39, 236, 454
MroI	TCCGGA	1 cut(s)	337
MseI	TTAA	1 cut(s)	404
MslI	CAYNNNNRTG	1 cut(s)	253
MspA1I	CMGCKG	1 cut(s)	240
MspI	CCGG	3 cut(s)	71, 338, 363
MspR9I	CCNGG	2 cut(s)	71, 72
Mva1269I	GAATGC	1 cut(s)	428
MwoI	GCNNNNNNNGC	3 cut(s)	56, 293, 425
NciI	CCSGG	2 cut(s)	71, 72
NdeII	GATC	3 cut(s)	181, 265, 340
NlaIII	CATG	2 cut(s)	358, 400
NlaIV	GGNNCC	2 cut(s)	193, 336
OliI	CACNNNNGTG	1 cut(s)	253
PciSI	GCTCTTC	1 cut(s)	40
PctI	GAATGC	1 cut(s)	428
PfeI	GAWTC	1 cut(s)	5
Psp124BI	GAGCTC	1 cut(s)	52
PspN4I	GGNNCC	2 cut(s)	193, 336
PspPI	GGNCC	1 cut(s)	245
PstNI	CAGNNNCTG	1 cut(s)	319
RsaI	GTAC	3 cut(s)	168, 198, 395
RsaNI	GTAC	3 cut(s)	167, 197, 394
RseI	CAYNNNNRTG	1 cut(s)	253
SacI	GAGCTC	1 cut(s)	52
SapI	GCTCTTC	1 cut(s)	40
SaqAI	TTAA	1 cut(s)	404
Sau3AI	GATC	3 cut(s)	181, 265, 340
Sau96I	GGNCC	1 cut(s)	245
ScrFI	CCNGG	2 cut(s)	71, 72
SduI	GDGCHC	2 cut(s)	52, 69
SetI	ASST	9 cut(s)	52, 61, 66, 144, 172, 202, 227, 321, 333
SmaI	CCCGGG	1 cut(s)	72
SmiMI	CAYNNNNRTG	1 cut(s)	253
SmlI	CTYRAG	1 cut(s)	51
SmoI	CTYRAG	1 cut(s)	51
Sse9I	AATT	4 cut(s)	76, 269, 348, 372
SsiI	CCGC	2 cut(s)	240, 456
SstI	GAGCTC	1 cut(s)	52
StyD4I	CCNGG	2 cut(s)	69, 70
TaaI	ACNGT	1 cut(s)	292
TaiI	ACGT	1 cut(s)	66
TasI	AATT	4 cut(s)	76, 269, 348, 372
TatI	WGTACW	1 cut(s)	393
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	1 cut(s)	404
Tru9I	TTAA	1 cut(s)	404
TspDTI	ATGAA	3 cut(s)	217, 219, 413
TspGWI	ACGGA	2 cut(s)	184, 265
TspMI	CCCGGG	1 cut(s)	70
XmaI	CCCGGG	1 cut(s)	70
XmiI	GTMKAC	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.