Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0035386.1

Orthogroup ID

OG0009299

Physical Location & Seq

Genomic Coordinates Reverse (-)

11 .. 2675

Gene Structure 2665 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0035386.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

atggaggaaaagttttgtcagttaactcttgatgttatagggctgtctttattcaactacaattttgattctcttaatactgatagccccgtcattgatgccgtttacactgcattgaaagaagcggagcttcgttctactgatatattaccatattggaaggttgatgctctgtgtaaaataatcccaagacaaataaaagctgaaaaagcagtttcaattatcaggagttctgttgaagaacttattgctaaatgcaaagcaattgtggaagctgagggtgaaagaattgatgaggaagaatatttaaatgaagctgatccaagcatccttcggtttttgcttgcaagtagagaagaggtttcaagtgtacaattacgagatgatcttttgtctatgttggttgctggacatgagacaactggttcagtattgacttggacgctatatcttctaagtaaggattcccgttcattagtgaaagcacaggaagaagttgacacagttttacagggacgacgtccttcctatgatgacataaaggatctgaagttcttaactcgctgcataatggaatctttgcgtctctttccacatcctcctgttttgataagaagggctcaagttgctgacgtgctccctggaaattacaaagtcaaccctggtcaggatattatgatatcggtatataatatccatcgctcttcagaggtgtgggagagagcagaagaattttcaccagagagatttgatatggaaggtcctatacccaatgaaacgaatacagatttcaggttcattccattcagtggagggccacgaaagtgtgttggtgatcagtttgctttgctggaagctattgttgctctggcaatctttattcagcacctgaactttgagcttgttcctgatcagaacattagcatgacaacaggagcaacaattcacactacaaatggtttgtacatgaaattgagtcaacggcaagcaaaatctgcgtttgctgcttcatccatctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009974 GO:0009987 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016491 GO:0016705 GO:0031967 GO:0031975 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0055114 GO:0071704 GO:0072374 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

339

Amino Acids

38.25

Weight (kDa)

4.95

Isoelectric Point (pI)

41.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009299)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53130
fragaria_vesca	FvH4_6g17140 FvH4_6g17140 FvH4_6g17140 FvH4_6g17140
malus_domestica	MD14G1097800.v1.1
prunus_persica	Prupe.7G123500_v2.0.a1
pyrus_communis	pycom12g10190 pycom14g09530 pycom14g09540
rosa_chinensis	RchiOBHm_Chr3g0471231
rosa_laevigata	RLG00000024195
rosa_multiflora	Rmu_sc0004870.1_g000001 Rmu_sc0023334.1_g000001 Rmu_sc0035386.1_g000001
rosa_roxburghii	Rroxscaffold_6G00410190
rosa_rugosa	Rorug03G0116300
rosa_samantha	Rh3AG165500 Rh3BG191000 Rh3CG181300 Rh3DG184700
rosa_wichuraiana	Rw3G015590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	523
AccB7I	CCANNNNNTGG	1 cut(s)	809
AciI	CCGC	1 cut(s)	125
AclWI	GGATC	2 cut(s)	314, 552
AcsI	RAATTY	1 cut(s)	731
AcuI	CTGAAG	2 cut(s)	569, 690
AcyI	GRCGYC	1 cut(s)	520
AfaI	GTAC	2 cut(s)	372, 965
AfiI	CCNNNNNNNGG	2 cut(s)	667, 809
AgsI	TTSAA	5 cut(s)	55, 118, 219, 239, 366
AjiI	CACGTC	1 cut(s)	634
AjnI	CCWGG	2 cut(s)	640, 661
AleI	CACNNNNGTG	1 cut(s)	823
AloI	GAACNNNNNNTCC	2 cut(s)	536, 568
AluBI	AGCT	6 cut(s)	130, 203, 275, 317, 857, 901
AluI	AGCT	6 cut(s)	130, 203, 275, 317, 857, 901
Alw21I	GWGCWC	1 cut(s)	639
Alw26I	GTCTC	2 cut(s)	410, 590
AlwI	GGATC	2 cut(s)	314, 552
AlwNI	CAGNNNCTG	1 cut(s)	889
AoxI	GGCC	1 cut(s)	815
ApeKI	GCWGC	2 cut(s)	564, 1004
ApoI	RAATTY	1 cut(s)	731
AspS9I	GGNCC	2 cut(s)	761, 815
AsuHPI	GGTGA	3 cut(s)	293, 729, 845
AvaII	GGWCC	1 cut(s)	761
BanII	GRGCYC	1 cut(s)	622
BarI	GAAGNNNNNNTAC	2 cut(s)	750, 782
Bbv12I	GWGCWC	1 cut(s)	639
BbvCI	CCTCAGC	1 cut(s)	276
BbvI	GCAGC	2 cut(s)	551, 991
BccI	CCATC	1 cut(s)	705
BceAI	ACGGC	2 cut(s)	86, 998
BciT130I	CCWGG	2 cut(s)	642, 663
BclI	TGATCA	2 cut(s)	835, 910
BcoDI	GTCTC	2 cut(s)	410, 590
BisI	GCNGC	2 cut(s)	565, 1005
BlsI	GCNGC	2 cut(s)	566, 1006
Bme1390I	CCNGG	2 cut(s)	642, 663
Bme18I	GGWCC	1 cut(s)	761
BmgBI	CACGTC	1 cut(s)	634
BmgT120I	GGNCC	2 cut(s)	761, 815
BmrFI	CCNGG	2 cut(s)	642, 663
BmsI	GCATC	3 cut(s)	88, 157, 336
Bpu10I	CCTNAGC	1 cut(s)	276
BpuEI	CTTGAG	1 cut(s)	606
BsaHI	GRCGYC	1 cut(s)	520
BsaJI	CCNNGG	2 cut(s)	640, 661
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	2 cut(s)	667, 809
Bse1I	ACTGG	1 cut(s)	427
BseBI	CCWGG	2 cut(s)	642, 663
BseDI	CCNNGG	2 cut(s)	640, 661
BseGI	GGATG	3 cut(s)	327, 595, 1010
BseLI	CCNNNNNNNGG	2 cut(s)	667, 809
BseMII	CTCAG	1 cut(s)	267
BseNI	ACTGG	1 cut(s)	427
BseXI	GCAGC	2 cut(s)	551, 991
BshFI	GGCC	1 cut(s)	817
BsiHKAI	GWGCWC	1 cut(s)	639
BslFI	GGGAC	1 cut(s)	528
BslI	CCNNNNNNNGG	2 cut(s)	667, 809
BsmAI	GTCTC	2 cut(s)	410, 590
BsmBI	CGTCTC	1 cut(s)	590
BsmFI	GGGAC	1 cut(s)	528
BsnI	GGCC	1 cut(s)	817
Bsp1286I	GDGCHC	2 cut(s)	622, 639
Bsp1407I	TGTACA	2 cut(s)	370, 963
Bsp143I	GATC	5 cut(s)	319, 385, 544, 835, 910
BspACI	CCGC	1 cut(s)	125
BspANI	GGCC	1 cut(s)	817
BspCNI	CTCAG	1 cut(s)	268
BspPI	GGATC	2 cut(s)	314, 552
BspQI	GCTCTTC	1 cut(s)	709
BsrGI	TGTACA	2 cut(s)	370, 963
BsrI	ACTGG	1 cut(s)	427
BssECI	CCNNGG	2 cut(s)	640, 661
BssMI	GATC	5 cut(s)	319, 385, 544, 835, 910
BssNI	GRCGYC	1 cut(s)	520
Bst2UI	CCWGG	2 cut(s)	642, 663
Bst4CI	ACNGT	1 cut(s)	505
Bst6I	CTCTTC	2 cut(s)	351, 709
BstACI	GRCGYC	1 cut(s)	520
BstAPI	GCANNNNNTGC	1 cut(s)	995
BstAUI	TGTACA	2 cut(s)	370, 963
BstC8I	GCNNGC	2 cut(s)	345, 987
BstDEI	CTNAG	2 cut(s)	276, 455
BstF5I	GGATG	3 cut(s)	327, 595, 1010
BstKTI	GATC	5 cut(s)	322, 388, 547, 838, 913
BstMAI	GTCTC	2 cut(s)	410, 590
BstMBI	GATC	5 cut(s)	319, 385, 544, 835, 910
BstMWI	GCNNNNNNNGC	5 cut(s)	209, 626, 863, 995, 1004
BstNI	CCWGG	2 cut(s)	642, 663
BstSCI	CCNGG	2 cut(s)	640, 661
BstV1I	GCAGC	2 cut(s)	551, 991
BstX2I	RGATCY	1 cut(s)	544
BstYI	RGATCY	1 cut(s)	544
BsuRI	GGCC	1 cut(s)	817
BtgZI	GCGATG	1 cut(s)	683
BtrI	CACGTC	1 cut(s)	634
BtsCI	GGATG	3 cut(s)	327, 595, 1010
BtsI	GCAGTG	1 cut(s)	108
BtsIMutI	CAGTG	2 cut(s)	108, 814
Cac8I	GCNNGC	2 cut(s)	345, 987
CaiI	CAGNNNCTG	1 cut(s)	889
Cfr13I	GGNCC	2 cut(s)	761, 815
CseI	GACGC	2 cut(s)	451, 572
Csp6I	GTAC	2 cut(s)	371, 964
CviAII	CATG	3 cut(s)	413, 925, 967
CviQI	GTAC	2 cut(s)	371, 964
DdeI	CTNAG	2 cut(s)	276, 455
DpnI	GATC	5 cut(s)	321, 387, 546, 837, 912
DpnII	GATC	5 cut(s)	319, 385, 544, 835, 910
DraI	TTTAAA	1 cut(s)	309
Eam1104I	CTCTTC	2 cut(s)	351, 709
EarI	CTCTTC	2 cut(s)	351, 709
Eco24I	GRGCYC	1 cut(s)	622
Eco32I	GATATC	1 cut(s)	681
Eco47I	GGWCC	1 cut(s)	761
Eco57I	CTGAAG	2 cut(s)	569, 690
EcoO109I	RGGNCCY	1 cut(s)	761
EcoRII	CCWGG	2 cut(s)	640, 661
EcoRV	GATATC	1 cut(s)	681
EcoT38I	GRGCYC	1 cut(s)	622
Esp3I	CGTCTC	1 cut(s)	590
FaeI	CATG	3 cut(s)	416, 928, 970
FalI	AAGNNNNNCTT	2 cut(s)	114, 146
FaqI	GGGAC	1 cut(s)	528
FatI	CATG	3 cut(s)	412, 924, 966
FbaI	TGATCA	2 cut(s)	835, 910
Fnu4HI	GCNGC	2 cut(s)	565, 1005
FokI	GGATG	3 cut(s)	314, 582, 997
FriOI	GRGCYC	1 cut(s)	622
Fsp4HI	GCNGC	2 cut(s)	565, 1005
GluI	GCNGC	2 cut(s)	565, 1005
HaeIII	GGCC	1 cut(s)	817
HgaI	GACGC	2 cut(s)	451, 572
Hin1I	GRCGYC	1 cut(s)	520
Hin1II	CATG	3 cut(s)	416, 928, 970
HincII	GTYRAC	4 cut(s)	24, 499, 658, 980
HindII	GTYRAC	4 cut(s)	24, 499, 658, 980
HinfI	GANTC	4 cut(s)	68, 464, 575, 976
HpaI	GTTAAC	1 cut(s)	24
HphI	GGTGA	3 cut(s)	293, 729, 845
Hpy166II	GTNNAC	6 cut(s)	24, 106, 371, 499, 658, 980
Hpy188I	TCNGA	3 cut(s)	549, 709, 915
Hpy188III	TCNNGA	4 cut(s)	29, 226, 668, 908
Hpy8I	GTNNAC	6 cut(s)	24, 106, 371, 499, 658, 980
Hpy99I	CGWCG	1 cut(s)	522
HpyAV	CCTTC	5 cut(s)	154, 341, 534, 609, 752
HpyCH4III	ACNGT	1 cut(s)	505
HpyCH4IV	ACGT	2 cut(s)	520, 633
HpyCH4V	TGCA	4 cut(s)	113, 258, 347, 567
HpyF10VI	GCNNNNNNNGC	5 cut(s)	209, 626, 863, 995, 1004
HpyF3I	CTNAG	2 cut(s)	276, 455
HpySE526I	ACGT	2 cut(s)	520, 633
Hsp92I	GRCGYC	1 cut(s)	520
Hsp92II	CATG	3 cut(s)	416, 928, 970
Ksp22I	TGATCA	2 cut(s)	835, 910
KspAI	GTTAAC	1 cut(s)	24
Kzo9I	GATC	5 cut(s)	319, 385, 544, 835, 910
LguI	GCTCTTC	1 cut(s)	709
LmnI	GCTCC	3 cut(s)	127, 642, 935
Lsp1109I	GCAGC	2 cut(s)	551, 991
LweI	GCATC	3 cut(s)	88, 157, 336
MaeII	ACGT	2 cut(s)	520, 633
MalI	GATC	5 cut(s)	321, 387, 546, 837, 912
MboI	GATC	5 cut(s)	319, 385, 544, 835, 910
MboII	GAAGA	7 cut(s)	251, 311, 368, 443, 503, 696, 740
MfeI	CAATTG	1 cut(s)	264
MflI	RGATCY	1 cut(s)	544
MhlI	GDGCHC	2 cut(s)	622, 639
MluCI	AATT	9 cut(s)	61, 219, 264, 288, 374, 646, 731, 942, 971
MlyI	GAGTC	1 cut(s)	985
MnlI	CCTC	6 cut(s)	271, 289, 352, 609, 703, 806
MseI	TTAA	4 cut(s)	23, 75, 308, 557
MslI	CAYNNNNRTG	2 cut(s)	823, 923
MspR9I	CCNGG	2 cut(s)	642, 663
MunI	CAATTG	1 cut(s)	264
MvaI	CCWGG	2 cut(s)	642, 663
MwoI	GCNNNNNNNGC	5 cut(s)	209, 626, 863, 995, 1004
NdeII	GATC	5 cut(s)	319, 385, 544, 835, 910
NlaIII	CATG	3 cut(s)	416, 928, 970
OliI	CACNNNNGTG	1 cut(s)	823
PciSI	GCTCTTC	1 cut(s)	709
PfeI	GAWTC	3 cut(s)	68, 464, 575
PflFI	GACNNNGTC	1 cut(s)	519
PflMI	CCANNNNNTGG	1 cut(s)	809
PkrI	GCNGC	2 cut(s)	566, 1006
PleI	GAGTC	1 cut(s)	984
PpsI	GAGTC	1 cut(s)	984
PpuMI	RGGWCCY	1 cut(s)	761
Psp5II	RGGWCCY	1 cut(s)	761
Psp6I	CCWGG	2 cut(s)	640, 661
PspGI	CCWGG	2 cut(s)	640, 661
PspPI	GGNCC	2 cut(s)	761, 815
PspPPI	RGGWCCY	1 cut(s)	761
PstNI	CAGNNNCTG	1 cut(s)	889
PsuI	RGATCY	1 cut(s)	544
PsyI	GACNNNGTC	1 cut(s)	519
RsaI	GTAC	2 cut(s)	372, 965
RsaNI	GTAC	2 cut(s)	371, 964
RseI	CAYNNNNRTG	2 cut(s)	823, 923
SapI	GCTCTTC	1 cut(s)	709
SaqAI	TTAA	4 cut(s)	23, 75, 308, 557
SatI	GCNGC	2 cut(s)	565, 1005
Sau3AI	GATC	5 cut(s)	319, 385, 544, 835, 910
Sau96I	GGNCC	2 cut(s)	761, 815
SchI	GAGTC	1 cut(s)	985
ScrFI	CCNGG	2 cut(s)	642, 663
SduI	GDGCHC	2 cut(s)	622, 639
SfaNI	GCATC	3 cut(s)	88, 157, 336
SinI	GGWCC	1 cut(s)	761
SmiI	ATTTAAAT	1 cut(s)	309
SmiMI	CAYNNNNRTG	2 cut(s)	823, 923
SmlI	CTYRAG	1 cut(s)	621
SmoI	CTYRAG	1 cut(s)	621
Sse9I	AATT	9 cut(s)	61, 219, 264, 288, 374, 646, 731, 942, 971
SsiI	CCGC	1 cut(s)	125
SspI	AATATT	1 cut(s)	305
StyD4I	CCNGG	2 cut(s)	640, 661
SwaI	ATTTAAAT	1 cut(s)	309
TaaI	ACNGT	1 cut(s)	505
TaiI	ACGT	2 cut(s)	523, 636
TasI	AATT	9 cut(s)	61, 219, 264, 288, 374, 646, 731, 942, 971
TatI	WGTACW	2 cut(s)	370, 963
TfiI	GAWTC	3 cut(s)	68, 464, 575
Tru1I	TTAA	4 cut(s)	23, 75, 308, 557
Tru9I	TTAA	4 cut(s)	23, 75, 308, 557
TscAI	CASTG	2 cut(s)	115, 814
TseI	GCWGC	2 cut(s)	564, 1004
TspDTI	ATGAA	6 cut(s)	327, 462, 787, 789, 983, 999
TspRI	CASTG	2 cut(s)	115, 814
Tth111I	GACNNNGTC	1 cut(s)	519
Van91I	CCANNNNNTGG	1 cut(s)	809
VpaK11BI	GGWCC	1 cut(s)	761
XapI	RAATTY	1 cut(s)	731
ZraI	GACGTC	1 cut(s)	521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.