pycom14g11390

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0016554
Physical Location & Seq
Reverse (-)
14454274 .. 14454851
578 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 453 bp
ATGCGGTTCGATGAAAGTCGCCCGCACCAGCGAACGCGTATAAATAACGGCCCGGCAGAGGCGCCAGCCAATGCCTCTCTCCGCAACGGAAAATTAAGAAAAAAACAGAGAGAAGGAAATCGCAAAGTTCGGGTTCGAGATCCGGCGAGCCTCGTCGGGTTTCGACCACCTGAATTCGAATCATTAGTTTTCGGAGCTCCGAAACGCACCGTTTCTCTCCTCTCGTCGACTTCGAGTTCTCCGAAAATGAAGGGCTCGGGTCCTCTGGTCGCATCGGTAGTCGCCGCCTCCACCATGGCTCTGACGACGTCGTCCTCGTCCAACCAGGGTTTTTCTTCCCCGGCGACGAAGAACGGCGGGAAAAATTCGCATACGGCGTCGGACAAGGATAAGTTCGAGCCGAGATTCGACGGTTTGAGGTTCATTGAGACGCTGGTGACGGCGCACAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

151

Amino Acids

16.24

Weight (kDa)

11.31

Isoelectric Point (pI)

47.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016554)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42110
fragaria_vesca FvH4_5g10570 FvH4_5g10570 FvH4_5g10570
malus_domestica MD06G1122200.v1.1 MD14G1138600.v1.1
prunus_persica Prupe.5G132900_v2.0.a1 Prupe.5G132900_v2.0.a1
pyrus_communis pycom14g11390
rosa_chinensis RchiOBHm_Chr7g0187581
rosa_roxburghii Rroxscaffold_3G00267290
rosa_rugosa Rorug06G0482800
rosa_samantha Rh7AG087700 Rh7DG089900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 310
AatII GACGTC 1 cut(s) 311
AccB1I GGYRCC 1 cut(s) 61
AccI GTMKAC 1 cut(s) 227
AccII CGCG 1 cut(s) 37
AciI CCGC 5 cut(s) 4, 23, 82, 285, 357
AclWI GGATC 1 cut(s) 134
AcsI RAATTY 2 cut(s) 173, 364
AcyI GRCGYC 3 cut(s) 62, 308, 377
AfiI CCNNNNNNNGG 1 cut(s) 58
AflIII ACRYGT 1 cut(s) 35
AjnI CCWGG 1 cut(s) 324
AluBI AGCT 1 cut(s) 197
AluI AGCT 1 cut(s) 197
Alw21I GWGCWC 1 cut(s) 199
Alw26I GTCTC 1 cut(s) 422
AlwI GGATC 1 cut(s) 134
Ama87I CYCGRG 1 cut(s) 256
AoxI GGCC 1 cut(s) 49
ApoI RAATTY 2 cut(s) 173, 364
AspLEI GCGC 2 cut(s) 64, 445
AspS9I GGNCC 2 cut(s) 50, 260
AsuC2I CCSGG 2 cut(s) 53, 341
AsuHPI GGTGA 1 cut(s) 448
AsuII TTCGAA 1 cut(s) 177
AvaI CYCGRG 1 cut(s) 256
AvaII GGWCC 1 cut(s) 260
BanI GGYRCC 1 cut(s) 61
BanII GRGCYC 2 cut(s) 199, 257
Bbv12I GWGCWC 1 cut(s) 199
BceAI ACGGC 3 cut(s) 64, 370, 390
BciT130I CCWGG 1 cut(s) 326
BcnI CCSGG 2 cut(s) 53, 341
BcoDI GTCTC 1 cut(s) 422
BfoI RGCGCY 1 cut(s) 65
BisI GCNGC 1 cut(s) 285
BlsI GCNGC 1 cut(s) 286
Bme1390I CCNGG 3 cut(s) 53, 326, 341
Bme18I GGWCC 1 cut(s) 260
BmeT110I CYCGRG 1 cut(s) 256
BmgT120I GGNCC 2 cut(s) 50, 260
BmiI GGNNCC 2 cut(s) 63, 261
BmrFI CCNGG 3 cut(s) 53, 326, 341
BmsI GCATC 1 cut(s) 281
Bpu14I TTCGAA 1 cut(s) 177
BpuMI CCSGG 2 cut(s) 53, 341
BsaHI GRCGYC 3 cut(s) 62, 308, 377
BsaJI CCNNGG 3 cut(s) 294, 325, 339
Bsc4I CCNNNNNNNGG 1 cut(s) 58
BseBI CCWGG 1 cut(s) 326
BseDI CCNNGG 3 cut(s) 294, 325, 339
BseLI CCNNNNNNNGG 1 cut(s) 58
BseRI GAGGAG 1 cut(s) 209
Bsh1236I CGCG 1 cut(s) 37
BshFI GGCC 1 cut(s) 51
BshNI GGYRCC 1 cut(s) 61
BsiHKAI GWGCWC 1 cut(s) 199
BsiHKCI CYCGRG 1 cut(s) 256
BsiSI CCGG 3 cut(s) 53, 143, 341
BslI CCNNNNNNNGG 1 cut(s) 58
BsmAI GTCTC 1 cut(s) 422
BsmBI CGTCTC 1 cut(s) 422
BsnI GGCC 1 cut(s) 51
BsoBI CYCGRG 1 cut(s) 256
Bsp119I TTCGAA 1 cut(s) 177
Bsp1286I GDGCHC 2 cut(s) 199, 257
Bsp143I GATC 1 cut(s) 139
Bsp19I CCATGG 1 cut(s) 294
BspACI CCGC 5 cut(s) 4, 23, 82, 285, 357
BspANI GGCC 1 cut(s) 51
BspFNI CGCG 1 cut(s) 37
BspLI GGNNCC 2 cut(s) 63, 261
BspPI GGATC 1 cut(s) 134
BspT104I TTCGAA 1 cut(s) 177
BspT107I GGYRCC 1 cut(s) 61
BssECI CCNNGG 3 cut(s) 294, 325, 339
BssMI GATC 1 cut(s) 139
BssNI GRCGYC 3 cut(s) 62, 308, 377
BssT1I CCWWGG 1 cut(s) 294
Bst2UI CCWGG 1 cut(s) 326
Bst4CI ACNGT 2 cut(s) 211, 413
BstACI GRCGYC 3 cut(s) 62, 308, 377
BstBI TTCGAA 1 cut(s) 177
BstC8I GCNNGC 3 cut(s) 23, 66, 148
BstDSI CCRYGG 1 cut(s) 294
BstFNI CGCG 1 cut(s) 37
BstH2I RGCGCY 1 cut(s) 65
BstHHI GCGC 2 cut(s) 64, 445
BstKTI GATC 1 cut(s) 142
BstMAI GTCTC 1 cut(s) 422
BstMBI GATC 1 cut(s) 139
BstNI CCWGG 1 cut(s) 326
BstSCI CCNGG 3 cut(s) 51, 324, 339
BstUI CGCG 1 cut(s) 37
BstX2I RGATCY 1 cut(s) 139
BstYI RGATCY 1 cut(s) 139
BsuRI GGCC 1 cut(s) 51
BtgI CCRYGG 1 cut(s) 294
Cac8I GCNNGC 3 cut(s) 23, 66, 148
CfoI GCGC 2 cut(s) 64, 445
Cfr13I GGNCC 2 cut(s) 50, 260
CseI GACGC 2 cut(s) 366, 439
CviAII CATG 1 cut(s) 295
CviJI RGCY 7 cut(s) 51, 68, 150, 197, 255, 299, 400
CviKI_1 RGCY 7 cut(s) 51, 68, 150, 197, 255, 299, 400
DinI GGCGCC 1 cut(s) 63
DpnI GATC 1 cut(s) 141
DpnII GATC 1 cut(s) 139
DrdI GACNNNNNNGTC 1 cut(s) 310
DseDI GACNNNNNNGTC 1 cut(s) 310
Ecl136II GAGCTC 1 cut(s) 197
Eco130I CCWWGG 1 cut(s) 294
Eco24I GRGCYC 2 cut(s) 199, 257
Eco47I GGWCC 1 cut(s) 260
Eco53kI GAGCTC 1 cut(s) 197
Eco88I CYCGRG 1 cut(s) 256
EcoICRI GAGCTC 1 cut(s) 197
EcoO109I RGGNCCY 1 cut(s) 260
EcoRI GAATTC 1 cut(s) 173
EcoRII CCWGG 1 cut(s) 324
EcoT14I CCWWGG 1 cut(s) 294
EcoT38I GRGCYC 2 cut(s) 199, 257
EgeI GGCGCC 1 cut(s) 63
EheI GGCGCC 1 cut(s) 63
ErhI CCWWGG 1 cut(s) 294
Esp3I CGTCTC 1 cut(s) 422
FaeI CATG 1 cut(s) 298
FaiI YATR 3 cut(s) 41, 296, 372
FatI CATG 1 cut(s) 294
FauI CCCGC 2 cut(s) 30, 350
FblI GTMKAC 1 cut(s) 227
Fnu4HI GCNGC 1 cut(s) 285
FriOI GRGCYC 2 cut(s) 199, 257
Fsp4HI GCNGC 1 cut(s) 285
GlaI GCGC 2 cut(s) 63, 444
GluI GCNGC 1 cut(s) 285
HaeII RGCGCY 1 cut(s) 65
HaeIII GGCC 1 cut(s) 51
HapII CCGG 3 cut(s) 53, 143, 341
HgaI GACGC 2 cut(s) 366, 439
HhaI GCGC 2 cut(s) 64, 445
Hin1I GRCGYC 3 cut(s) 62, 308, 377
Hin1II CATG 1 cut(s) 298
Hin6I GCGC 2 cut(s) 62, 443
HinP1I GCGC 2 cut(s) 62, 443
HincII GTYRAC 1 cut(s) 228
HindII GTYRAC 1 cut(s) 228
HinfI GANTC 2 cut(s) 179, 405
HpaII CCGG 3 cut(s) 53, 143, 341
HphI GGTGA 1 cut(s) 448
Hpy166II GTNNAC 1 cut(s) 228
Hpy188I TCNGA 5 cut(s) 194, 201, 243, 303, 382
Hpy188III TCNNGA 1 cut(s) 137
Hpy8I GTNNAC 1 cut(s) 228
Hpy99I CGWCG 7 cut(s) 158, 229, 310, 313, 349, 382, 413
HpyAV CCTTC 2 cut(s) 107, 244
HpyCH4III ACNGT 2 cut(s) 211, 413
HpyCH4IV ACGT 1 cut(s) 308
HpySE526I ACGT 1 cut(s) 308
Hsp92I GRCGYC 3 cut(s) 62, 308, 377
Hsp92II CATG 1 cut(s) 298
HspAI GCGC 2 cut(s) 62, 443
KasI GGCGCC 1 cut(s) 61
Kzo9I GATC 1 cut(s) 139
LmnI GCTCC 2 cut(s) 194, 202
LweI GCATC 1 cut(s) 281
MaeII ACGT 1 cut(s) 308
MaeIII GTNAC 1 cut(s) 436
MalI GATC 1 cut(s) 141
MboI GATC 1 cut(s) 139
MboII GAAGA 2 cut(s) 327, 361
MflI RGATCY 1 cut(s) 139
MhlI GDGCHC 2 cut(s) 199, 257
MluCI AATT 3 cut(s) 92, 173, 364
MluI ACGCGT 1 cut(s) 35
Mly113I GGCGCC 1 cut(s) 62
MmeI TCCRAC 2 cut(s) 345, 360
MnlI CCTC 8 cut(s) 52, 85, 161, 230, 273, 298, 325, 411
MseI TTAA 1 cut(s) 95
MspI CCGG 3 cut(s) 53, 143, 341
MspR9I CCNGG 3 cut(s) 53, 326, 341
MvaI CCWGG 1 cut(s) 326
MvnI CGCG 1 cut(s) 37
NarI GGCGCC 1 cut(s) 62
NciI CCSGG 2 cut(s) 53, 341
NcoI CCATGG 1 cut(s) 294
NdeII GATC 1 cut(s) 139
NlaIII CATG 1 cut(s) 298
NlaIV GGNNCC 2 cut(s) 63, 261
NmeAIII GCCGAG 1 cut(s) 426
NmuCI GTSAC 1 cut(s) 436
NspV TTCGAA 1 cut(s) 177
PcsI WCGNNNNNNNCGW 4 cut(s) 230, 239, 314, 374
PfeI GAWTC 2 cut(s) 179, 405
PflFI GACNNNGTC 2 cut(s) 307, 310
PkrI GCNGC 1 cut(s) 286
PluTI GGCGCC 1 cut(s) 65
PpuMI RGGWCCY 1 cut(s) 260
Psp124BI GAGCTC 1 cut(s) 199
Psp5II RGGWCCY 1 cut(s) 260
Psp6I CCWGG 1 cut(s) 324
PspGI CCWGG 1 cut(s) 324
PspN4I GGNNCC 2 cut(s) 63, 261
PspPI GGNCC 2 cut(s) 50, 260
PspPPI RGGWCCY 1 cut(s) 260
PsuI RGATCY 1 cut(s) 139
PsyI GACNNNGTC 2 cut(s) 307, 310
SacI GAGCTC 1 cut(s) 199
SalI GTCGAC 1 cut(s) 226
SaqAI TTAA 1 cut(s) 95
SatI GCNGC 1 cut(s) 285
Sau3AI GATC 1 cut(s) 139
Sau96I GGNCC 2 cut(s) 50, 260
ScrFI CCNGG 3 cut(s) 53, 326, 341
SduI GDGCHC 2 cut(s) 199, 257
SetI ASST 4 cut(s) 172, 199, 311, 422
SfaNI GCATC 1 cut(s) 281
SfoI GGCGCC 1 cut(s) 63
SfuI TTCGAA 1 cut(s) 177
SinI GGWCC 1 cut(s) 260
Sse9I AATT 3 cut(s) 92, 173, 364
SsiI CCGC 5 cut(s) 4, 23, 82, 285, 357
SspDI GGCGCC 1 cut(s) 61
SstI GAGCTC 1 cut(s) 199
StyD4I CCNGG 3 cut(s) 51, 324, 339
StyI CCWWGG 1 cut(s) 294
TaaI ACNGT 2 cut(s) 211, 413
TaiI ACGT 1 cut(s) 311
TaqI TCGA 8 cut(s) 9, 136, 163, 177, 227, 233, 396, 408
TasI AATT 3 cut(s) 92, 173, 364
TauI GCSGC 1 cut(s) 287
TfiI GAWTC 2 cut(s) 179, 405
Tru1I TTAA 1 cut(s) 95
Tru9I TTAA 1 cut(s) 95
TseFI GTSAC 1 cut(s) 436
Tsp45I GTSAC 1 cut(s) 436
TspDTI ATGAA 3 cut(s) 27, 263, 412
TspGWI ACGGA 1 cut(s) 102
Tth111I GACNNNGTC 2 cut(s) 307, 310
VpaK11BI GGWCC 1 cut(s) 260
XapI RAATTY 2 cut(s) 173, 364
XmiI GTMKAC 1 cut(s) 227
ZraI GACGTC 1 cut(s) 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.