Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0007011

Physical Location & Seq

Genomic Coordinates Reverse (-)

14485682 .. 14488221

Gene Structure 2540 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGGTCTCAGCAGACCTCACAAGGTCGGCAATGGAGTCCCCGCCAGATGGGTTTCTCTCTTCTGCATTGCCAGCTTCTTCCTCGGTGTTCTTGTTGTCAACAGTTTTTGGGGTGATCCCGATCCAGAGAAAATTGATGAGGAGGCTTCACCACTGGAGAAAGATCAATCAAGAAGAGTTCTGCATCCCATAGCTAATTGTGAGAAGAAGGAGGCTGCTAATGGCGTAGGAGACATCCTTTCTCAAGTCTCGCAAACACATGATGTGATCATGGCATTGGATAAGACAATTTCCACATTGGAGGTCCAGCTAGCGACAGCTAGATCTTCCAAATCTGGAAATGATGAAGGATCTCCTATGGTGATAAAACCAGGAGGTGAGCCATTGAAAGAGCGCCAGAAGGTTTTCTTTGTGATGGGAATCATGACTGCCTTTAGCAGCCGGAAACGAAGGGAGTCAATCAGGGAAACATGGATGCCACAAGGGGATGAGTTAAAGAAGTTAGAGGAAGAAAAGGGAATTATAATGCGGTTTGTTATTGGACACAGTGCAACTCCAGGGGGTGTTTTGGATCGTGCCATTGAGGCAGAAGAGGAGAAACATAAGGATTTTTTCCGACTAAATCACATAGAAGGATATCGTGAATTGTCGTCAAAAACCCAAATATATTTTACGGCAGCTGTCTCTAAGTGGGATGCTGACTTTTATATCAAGGTTGATGATGATGTGCACATAAATCTTGGAATGGTTGGTTCTACTTTGGCCCGTCATAGATCAATCAACCTCGTACATATATCGGTTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000139 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0007275 GO:0008150 GO:0008378 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0012505 GO:0016020 GO:0016740 GO:0016757 GO:0016758 GO:0022414 GO:0031090 GO:0031984 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

269

Amino Acids

29.92

Weight (kDa)

6.32

Isoelectric Point (pI)

46.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4094	PF13334	15 - 110	5.8e-22	Domain of unknown function (DUF4094)
Galactosyl_T	PF01762	149 - 257	2.5e-26	Galactosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32930
fragaria_vesca	FvH4_5g10510 FvH4_5g10510 FvH4_5g10510 FvH4_5g10510 FvH4_5g10510 FvH4_5g10510 FvH4_5g10510
malus_domestica	MD00G1034600.v1.1 MD06G1122400.v1.1
prunus_persica	Prupe.5G133400_v2.0.a1 Prupe.5G133400_v2.0.a1
pyrus_communis	pycom06g11400 pycom14g11420
rosa_chinensis	RchiOBHm_Chr7g0187611
rosa_laevigata	RLG00000004766
rosa_multiflora	Rmu_sc0041260.1_g000001 Rmu_ssc0000110.1_g000015
rosa_roxburghii	Rroxscaffold_3G00267250
rosa_rugosa	Rorug06G0482900
rosa_samantha	Rh7AG088000 Rh7BG089300 Rh7CG088500 Rh7DG090300
rosa_wichuraiana	Rw0G002640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	524
AciI	CCGC	2 cut(s)	42, 529
AclWI	GGATC	4 cut(s)	110, 116, 358, 579
AfaI	GTAC	1 cut(s)	789
AfiI	CCNNNNNNNGG	1 cut(s)	48
AgsI	TTSAA	1 cut(s)	388
AjnI	CCWGG	2 cut(s)	370, 556
AluBI	AGCT	5 cut(s)	75, 194, 310, 320, 680
AluI	AGCT	5 cut(s)	75, 194, 310, 320, 680
Alw21I	GWGCWC	1 cut(s)	732
Alw26I	GTCTC	4 cut(s)	11, 225, 253, 688
Alw44I	GTGCAC	1 cut(s)	728
AlwI	GGATC	4 cut(s)	110, 116, 358, 579
AoxI	GGCC	1 cut(s)	762
ApaLI	GTGCAC	1 cut(s)	728
ApeKI	GCWGC	3 cut(s)	215, 438, 677
Asp700I	GAANNNNTTC	1 cut(s)	404
AspLEI	GCGC	1 cut(s)	396
AspS9I	GGNCC	2 cut(s)	304, 763
AsuHPI	GGTGA	4 cut(s)	125, 141, 373, 389
AsuNHI	GCTAGC	1 cut(s)	310
AvaII	GGWCC	1 cut(s)	304
BaeGI	GKGCMC	1 cut(s)	732
Bbv12I	GWGCWC	1 cut(s)	732
BbvI	GCAGC	3 cut(s)	202, 450, 689
BccI	CCATC	2 cut(s)	42, 409
BceAI	ACGGC	1 cut(s)	690
BciT130I	CCWGG	2 cut(s)	372, 558
BclI	TGATCA	1 cut(s)	267
BcoDI	GTCTC	4 cut(s)	11, 225, 253, 688
BfaI	CTAG	2 cut(s)	311, 321
BfoI	RGCGCY	1 cut(s)	397
BglI	GCCNNNNNGGC	1 cut(s)	584
BglII	AGATCT	1 cut(s)	323
BisI	GCNGC	3 cut(s)	216, 439, 678
BlsI	GCNGC	3 cut(s)	217, 440, 679
Bme1390I	CCNGG	2 cut(s)	372, 558
Bme18I	GGWCC	1 cut(s)	304
BmgT120I	GGNCC	2 cut(s)	304, 763
BmrFI	CCNGG	2 cut(s)	372, 558
BmsI	GCATC	3 cut(s)	193, 465, 685
BmtI	GCTAGC	1 cut(s)	314
BpmI	CTGGAG	2 cut(s)	176, 540
BpuEI	CTTGAG	1 cut(s)	228
BsaBI	GATNNNNATC	2 cut(s)	120, 419
BsaI	GGTCTC	1 cut(s)	11
BsaJI	CCNNGG	2 cut(s)	82, 557
Bsc4I	CCNNNNNNNGG	1 cut(s)	48
Bse1I	ACTGG	1 cut(s)	159
Bse3DI	GCAATG	2 cut(s)	37, 66
Bse8I	GATNNNNATC	2 cut(s)	120, 419
BseBI	CCWGG	2 cut(s)	372, 558
BseDI	CCNNGG	2 cut(s)	82, 557
BseGI	GGATG	5 cut(s)	184, 234, 480, 493, 700
BseJI	GATNNNNATC	2 cut(s)	120, 419
BseLI	CCNNNNNNNGG	1 cut(s)	48
BseMI	GCAATG	2 cut(s)	37, 66
BseMII	CTCAG	1 cut(s)	22
BseNI	ACTGG	1 cut(s)	159
BseRI	GAGGAG	2 cut(s)	155, 608
BseSI	GKGCMC	1 cut(s)	732
BseXI	GCAGC	3 cut(s)	202, 450, 689
BshFI	GGCC	1 cut(s)	764
BsiHKAI	GWGCWC	1 cut(s)	732
BsiSI	CCGG	1 cut(s)	442
BslFI	GGGAC	1 cut(s)	23
BslI	CCNNNNNNNGG	1 cut(s)	48
BsmAI	GTCTC	4 cut(s)	11, 225, 253, 688
BsmFI	GGGAC	1 cut(s)	23
BsnI	GGCC	1 cut(s)	764
Bso31I	GGTCTC	1 cut(s)	11
Bsp1286I	GDGCHC	1 cut(s)	732
Bsp143I	GATC	8 cut(s)	115, 121, 163, 267, 323, 350, 571, 773
BspACI	CCGC	2 cut(s)	42, 529
BspANI	GGCC	1 cut(s)	764
BspCNI	CTCAG	1 cut(s)	21
BspHI	TCATGA	1 cut(s)	423
BspOI	GCTAGC	1 cut(s)	314
BspPI	GGATC	4 cut(s)	110, 116, 358, 579
BspTNI	GGTCTC	1 cut(s)	11
BsrDI	GCAATG	2 cut(s)	37, 66
BsrI	ACTGG	1 cut(s)	159
BssECI	CCNNGG	2 cut(s)	82, 557
BssMI	GATC	8 cut(s)	115, 121, 163, 267, 323, 350, 571, 773
Bst2UI	CCWGG	2 cut(s)	372, 558
Bst4CI	ACNGT	2 cut(s)	104, 548
Bst6I	CTCTTC	3 cut(s)	65, 169, 585
BstC8I	GCNNGC	2 cut(s)	73, 312
BstDEI	CTNAG	2 cut(s)	8, 687
BstF5I	GGATG	5 cut(s)	184, 234, 480, 493, 700
BstH2I	RGCGCY	1 cut(s)	397
BstHHI	GCGC	1 cut(s)	396
BstKTI	GATC	8 cut(s)	118, 124, 166, 270, 326, 353, 574, 776
BstMAI	GTCTC	4 cut(s)	11, 225, 253, 688
BstMBI	GATC	8 cut(s)	115, 121, 163, 267, 323, 350, 571, 773
BstMWI	GCNNNNNNNGC	2 cut(s)	72, 584
BstNI	CCWGG	2 cut(s)	372, 558
BstSCI	CCNGG	2 cut(s)	370, 556
BstSLI	GKGCMC	1 cut(s)	732
BstV1I	GCAGC	3 cut(s)	202, 450, 689
BstX2I	RGATCY	2 cut(s)	323, 350
BstYI	RGATCY	2 cut(s)	323, 350
BsuRI	GGCC	1 cut(s)	764
BtsCI	GGATG	5 cut(s)	184, 234, 480, 493, 700
BtsIMutI	CAGTG	2 cut(s)	152, 553
Cac8I	GCNNGC	2 cut(s)	73, 312
CciI	TCATGA	1 cut(s)	423
CfoI	GCGC	1 cut(s)	396
Cfr13I	GGNCC	2 cut(s)	304, 763
Csp6I	GTAC	1 cut(s)	788
CviAII	CATG	5 cut(s)	260, 271, 424, 471, 804
CviQI	GTAC	1 cut(s)	788
DdeI	CTNAG	2 cut(s)	8, 687
DpnI	GATC	8 cut(s)	117, 123, 165, 269, 325, 352, 573, 775
DpnII	GATC	8 cut(s)	115, 121, 163, 267, 323, 350, 571, 773
Eam1104I	CTCTTC	3 cut(s)	65, 169, 585
EarI	CTCTTC	3 cut(s)	65, 169, 585
Eco31I	GGTCTC	1 cut(s)	11
Eco32I	GATATC	1 cut(s)	638
Eco47I	GGWCC	1 cut(s)	304
EcoRII	CCWGG	2 cut(s)	370, 556
EcoRV	GATATC	1 cut(s)	638
FaeI	CATG	5 cut(s)	263, 274, 427, 474, 807
FalI	AAGNNNNNCTT	2 cut(s)	392, 424
FaqI	GGGAC	1 cut(s)	23
FatI	CATG	5 cut(s)	259, 270, 423, 470, 803
FauI	CCCGC	1 cut(s)	49
FbaI	TGATCA	1 cut(s)	267
Fnu4HI	GCNGC	3 cut(s)	216, 439, 678
FokI	GGATG	5 cut(s)	171, 221, 487, 500, 707
Fsp4HI	GCNGC	3 cut(s)	216, 439, 678
FspBI	CTAG	2 cut(s)	311, 321
GlaI	GCGC	1 cut(s)	395
GluI	GCNGC	3 cut(s)	216, 439, 678
GsuI	CTGGAG	2 cut(s)	176, 540
HaeII	RGCGCY	1 cut(s)	397
HaeIII	GGCC	1 cut(s)	764
HapII	CCGG	1 cut(s)	442
HhaI	GCGC	1 cut(s)	396
Hin1II	CATG	5 cut(s)	263, 274, 427, 474, 807
Hin6I	GCGC	1 cut(s)	394
HinP1I	GCGC	1 cut(s)	394
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HinfI	GANTC	3 cut(s)	36, 420, 455
HpaII	CCGG	1 cut(s)	442
HphI	GGTGA	4 cut(s)	125, 141, 373, 389
Hpy166II	GTNNAC	2 cut(s)	100, 730
Hpy188I	TCNGA	1 cut(s)	617
Hpy188III	TCNNGA	6 cut(s)	119, 125, 171, 336, 424, 641
Hpy8I	GTNNAC	2 cut(s)	100, 730
HpyAV	CCTTC	5 cut(s)	202, 341, 394, 444, 626
HpyCH4III	ACNGT	2 cut(s)	104, 548
HpyCH4V	TGCA	5 cut(s)	66, 184, 551, 730, 803
HpyF10VI	GCNNNNNNNGC	2 cut(s)	72, 584
HpyF3I	CTNAG	2 cut(s)	8, 687
Hsp92II	CATG	5 cut(s)	263, 274, 427, 474, 807
HspAI	GCGC	1 cut(s)	394
Ksp22I	TGATCA	1 cut(s)	267
Kzo9I	GATC	8 cut(s)	115, 121, 163, 267, 323, 350, 571, 773
Lsp1109I	GCAGC	3 cut(s)	202, 450, 689
LweI	GCATC	3 cut(s)	193, 465, 685
MaeI	CTAG	2 cut(s)	311, 321
MalI	GATC	8 cut(s)	117, 123, 165, 269, 325, 352, 573, 775
MboI	GATC	8 cut(s)	115, 121, 163, 267, 323, 350, 571, 773
MboII	GAAGA	7 cut(s)	52, 70, 186, 217, 318, 521, 602
MflI	RGATCY	2 cut(s)	323, 350
MhlI	GDGCHC	1 cut(s)	732
MluCI	AATT	5 cut(s)	132, 196, 288, 519, 644
MlyI	GAGTC	2 cut(s)	45, 464
MmeI	TCCRAC	1 cut(s)	640
MroXI	GAANNNNTTC	1 cut(s)	404
MseI	TTAA	1 cut(s)	494
MspA1I	CMGCKG	1 cut(s)	680
MspI	CCGG	1 cut(s)	442
MspR9I	CCNGG	2 cut(s)	372, 558
MvaI	CCWGG	2 cut(s)	372, 558
MwoI	GCNNNNNNNGC	2 cut(s)	72, 584
NdeII	GATC	8 cut(s)	115, 121, 163, 267, 323, 350, 571, 773
NheI	GCTAGC	1 cut(s)	310
NlaIII	CATG	5 cut(s)	263, 274, 427, 474, 807
PagI	TCATGA	1 cut(s)	423
PdmI	GAANNNNTTC	1 cut(s)	404
PfeI	GAWTC	1 cut(s)	420
PkrI	GCNGC	3 cut(s)	217, 440, 679
PleI	GAGTC	2 cut(s)	44, 463
PpsI	GAGTC	2 cut(s)	44, 463
PsiI	TTATAA	1 cut(s)	524
Psp6I	CCWGG	2 cut(s)	370, 556
PspGI	CCWGG	2 cut(s)	370, 556
PspPI	GGNCC	2 cut(s)	304, 763
PsuI	RGATCY	2 cut(s)	323, 350
PvuII	CAGCTG	1 cut(s)	680
RsaI	GTAC	1 cut(s)	789
RsaNI	GTAC	1 cut(s)	788
SaqAI	TTAA	1 cut(s)	494
SatI	GCNGC	3 cut(s)	216, 439, 678
Sau3AI	GATC	8 cut(s)	115, 121, 163, 267, 323, 350, 571, 773
Sau96I	GGNCC	2 cut(s)	304, 763
SchI	GAGTC	2 cut(s)	45, 464
ScrFI	CCNGG	2 cut(s)	372, 558
SduI	GDGCHC	1 cut(s)	732
SfaNI	GCATC	3 cut(s)	193, 465, 685
SinI	GGWCC	1 cut(s)	304
SmlI	CTYRAG	1 cut(s)	243
SmoI	CTYRAG	1 cut(s)	243
Sse9I	AATT	5 cut(s)	132, 196, 288, 519, 644
SsiI	CCGC	2 cut(s)	42, 529
SspMI	CTAG	2 cut(s)	311, 321
StyD4I	CCNGG	2 cut(s)	370, 556
TaaI	ACNGT	2 cut(s)	104, 548
TasI	AATT	5 cut(s)	132, 196, 288, 519, 644
TfiI	GAWTC	1 cut(s)	420
Tru1I	TTAA	1 cut(s)	494
Tru9I	TTAA	1 cut(s)	494
TscAI	CASTG	2 cut(s)	159, 553
TseI	GCWGC	3 cut(s)	215, 438, 677
TspDTI	ATGAA	1 cut(s)	360
TspRI	CASTG	2 cut(s)	159, 553
VneI	GTGCAC	1 cut(s)	728
VpaK11BI	GGWCC	1 cut(s)	304
XmnI	GAANNNNTTC	1 cut(s)	404
XspI	CTAG	2 cut(s)	311, 321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.