Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0003274

Physical Location & Seq

Genomic Coordinates Reverse (-)

14745226 .. 14746495

Gene Structure 1270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGACTTGGACTAAATCTCTGGCTTTCCATTCACCTAAACATAATGCTTTTCCAGTTTCTCCCTTGAATCCCGTATTGTCAAGGAATGTGGATTTTAAAGGCAATTGTTCTGTGAACGATTATGTGGATCTTCATCACCTGCTCTCTGGTGAAGGCAAAGGGATTCACCGTGATGAAAGTCCCAATGATATAGGAAATGAAGTTATTTTAACCAATATATCTGATGATTTCAGCCCGAAACATCTTGGCGTTAAAAGAGATGTTTCTCTTACTGTTGAAAATGAACAAGAAACGCGTAATAGTTTGAATCCACTGACACAACAACTTTTTCCTTGCCATGCTAAAACGATTGTACATTATCATGCGAGTGTGTGGGAGACGGTTTTCTCATCTTTCCAAAAGAGTGAATCTTCAGCTGTTGTTTCATTCTCCAAAGGGCATGGACCTTTTGATGCAGCAGGATCAAATTCTTCCATATCGATTTATGCCGATCAGTCTTCCAATGACAACCATGAAGTGGAAAGAGCTTATGGTCATAAACTTAATGTGATGCATGAAATGTCAGAATTGCTTGTTCAAAATTGTCCAAATGATTTAGATTCACTGGATGAACATAAGCATGACACGATCCAGCATATAATCACAAATCTTTCTATTTGCATCCAACAGAGGCCTGGAGGAAAGACTCCAATCTCTGACATAACTCTTACAGGCACTCCACACTACCCTAATAAATCAACAGAGCTCCAAATGGTAGGGTTATGTGCGCGTGTCCATAAATTTTGCGAATCTGGTGTGAATACGATACTGAACTTTGTTTTCCTGTTTTACTTTTTGAATCTGATTCGTACTGAACACTGTCAAATTTCTAGGCAGATATTTGTGCAATTTACTTGTGTGCTAAAATATAAATTTTGCTCTCCTTATCATATCAATTTCTACATGTTCTTACATTTGAATTCATACTTCTGTTGTGTTGATTACTTGATTTTCATTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

334

Amino Acids

37.78

Weight (kDa)

6.21

Isoelectric Point (pI)

45.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003274)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g10390 FvH4_5g10390 FvH4_5g10390 FvH4_5g10390 FvH4_5g10390 FvH4_5g10390 FvH4_5g10390 FvH4_5g10390 FvH4_5g10390 FvH4_5g10390 FvH4_5g10390 FvH4_5g10390
malus_domestica	MD06G1124500.v1.1
prunus_persica	Prupe.5G135100_v2.0.a1 Prupe.5G135100_v2.0.a1 Prupe.5G135100_v2.0.a1 Prupe.5G135100_v2.0.a1 Prupe.5G135100_v2.0.a1 Prupe.5G135100_v2.0.a1 Prupe.5G135100_v2.0.a1 Prupe.5G135100_v2.0.a1 Prupe.5G135100_v2.0.a1 Prupe.5G135100_v2.0.a1 Prupe.5G135100_v2.0.a1 Prupe.5G135100_v2.0.a1
pyrus_communis	pycom06g11490 pycom14g11660
rosa_chinensis	RchiOBHm_Chr7g0187831
rosa_laevigata	RLG00000004753
rosa_multiflora	Rmu_sc0004483.1_g000042
rosa_roxburghii	Rroxscaffold_3G00267020
rosa_rugosa	Rorug06G0484700
rosa_samantha	Rh7AG089900 Rh7BG091500 Rh7CG090600 Rh7DG092300
rosa_wichuraiana	Rw7G007750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	147
Acc36I	ACCTGC	1 cut(s)	147
AccB7I	CCANNNNNTGG	1 cut(s)	517
AccII	CGCG	2 cut(s)	295, 769
AclWI	GGATC	3 cut(s)	135, 469, 622
AcsI	RAATTY	5 cut(s)	466, 779, 864, 911, 958
AcuI	CTGAAG	1 cut(s)	396
AfaI	GTAC	2 cut(s)	354, 850
AfiI	CCNNNNNNNGG	1 cut(s)	517
AflIII	ACRYGT	2 cut(s)	293, 942
AgsI	TTSAA	6 cut(s)	67, 278, 307, 578, 838, 958
AjnI	CCWGG	1 cut(s)	673
AluBI	AGCT	3 cut(s)	416, 527, 745
AluI	AGCT	3 cut(s)	416, 527, 745
Alw21I	GWGCWC	1 cut(s)	747
Alw26I	GTCTC	1 cut(s)	371
AlwI	GGATC	3 cut(s)	135, 469, 622
AoxI	GGCC	1 cut(s)	671
ApeKI	GCWGC	1 cut(s)	455
ApoI	RAATTY	5 cut(s)	466, 779, 864, 911, 958
AspLEI	GCGC	1 cut(s)	769
AspS9I	GGNCC	1 cut(s)	443
AsuHPI	GGTGA	4 cut(s)	24, 128, 158, 161
AvaII	GGWCC	1 cut(s)	443
BanII	GRGCYC	1 cut(s)	747
BbsI	GAAGAC	1 cut(s)	489
Bbv12I	GWGCWC	1 cut(s)	747
BbvI	GCAGC	1 cut(s)	467
BciT130I	CCWGG	1 cut(s)	675
BcoDI	GTCTC	1 cut(s)	371
BfaI	CTAG	1 cut(s)	870
BfuAI	ACCTGC	1 cut(s)	147
BisI	GCNGC	1 cut(s)	456
BlsI	GCNGC	1 cut(s)	457
Bme1390I	CCNGG	1 cut(s)	675
Bme18I	GGWCC	1 cut(s)	443
BmgT120I	GGNCC	1 cut(s)	443
BmrFI	CCNGG	1 cut(s)	675
BmsI	GCATC	3 cut(s)	442, 540, 669
BpiI	GAAGAC	1 cut(s)	489
BpmI	CTGGAG	1 cut(s)	696
Bsa29I	ATCGAT	1 cut(s)	479
BsaBI	GATNNNNATC	1 cut(s)	132
BsaXI	ACNNNNNCTCC	2 cut(s)	700, 730
Bsc4I	CCNNNNNNNGG	1 cut(s)	517
Bse1I	ACTGG	2 cut(s)	53, 609
Bse8I	GATNNNNATC	1 cut(s)	132
BseBI	CCWGG	1 cut(s)	675
BseCI	ATCGAT	1 cut(s)	479
BseGI	GGATG	2 cut(s)	613, 660
BseJI	GATNNNNATC	1 cut(s)	132
BseLI	CCNNNNNNNGG	1 cut(s)	517
BseNI	ACTGG	2 cut(s)	53, 609
BseXI	GCAGC	1 cut(s)	467
Bsh1236I	CGCG	2 cut(s)	295, 769
BshFI	GGCC	1 cut(s)	673
BshVI	ATCGAT	1 cut(s)	479
BsiHKAI	GWGCWC	1 cut(s)	747
BslFI	GGGAC	1 cut(s)	165
BslI	CCNNNNNNNGG	1 cut(s)	517
BsmAI	GTCTC	1 cut(s)	371
BsmBI	CGTCTC	1 cut(s)	371
BsmFI	GGGAC	1 cut(s)	165
BsnI	GGCC	1 cut(s)	673
Bsp1286I	GDGCHC	1 cut(s)	747
Bsp1407I	TGTACA	1 cut(s)	352
Bsp143I	GATC	4 cut(s)	127, 461, 490, 627
BspANI	GGCC	1 cut(s)	673
BspDI	ATCGAT	1 cut(s)	479
BspFNI	CGCG	2 cut(s)	295, 769
BspMI	ACCTGC	1 cut(s)	147
BspPI	GGATC	3 cut(s)	135, 469, 622
BsrGI	TGTACA	1 cut(s)	352
BsrI	ACTGG	2 cut(s)	53, 609
BssMI	GATC	4 cut(s)	127, 461, 490, 627
Bst2UI	CCWGG	1 cut(s)	675
Bst4CI	ACNGT	4 cut(s)	170, 274, 382, 860
BstAUI	TGTACA	1 cut(s)	352
BstF5I	GGATG	2 cut(s)	613, 660
BstFNI	CGCG	2 cut(s)	295, 769
BstHHI	GCGC	1 cut(s)	769
BstKTI	GATC	4 cut(s)	130, 464, 493, 630
BstMAI	GTCTC	1 cut(s)	371
BstMBI	GATC	4 cut(s)	127, 461, 490, 627
BstNI	CCWGG	1 cut(s)	675
BstNSI	RCATGY	1 cut(s)	946
BstSCI	CCNGG	1 cut(s)	673
BstUI	CGCG	2 cut(s)	295, 769
BstV1I	GCAGC	1 cut(s)	467
BstV2I	GAAGAC	1 cut(s)	489
BstX2I	RGATCY	1 cut(s)	127
BstYI	RGATCY	1 cut(s)	127
Bsu15I	ATCGAT	1 cut(s)	479
BsuRI	GGCC	1 cut(s)	673
BsuTUI	ATCGAT	1 cut(s)	479
BtsCI	GGATG	2 cut(s)	613, 660
BtsIMutI	CAGTG	3 cut(s)	311, 602, 856
BveI	ACCTGC	1 cut(s)	147
CfoI	GCGC	1 cut(s)	769
Cfr13I	GGNCC	1 cut(s)	443
ClaI	ATCGAT	1 cut(s)	479
Csp6I	GTAC	2 cut(s)	353, 849
CspCI	CAANNNNNGTGG	2 cut(s)	69, 104
CviAII	CATG	7 cut(s)	338, 362, 440, 512, 554, 620, 943
CviJI	RGCY	6 cut(s)	23, 234, 416, 527, 673, 745
CviKI_1	RGCY	6 cut(s)	23, 234, 416, 527, 673, 745
CviQI	GTAC	2 cut(s)	353, 849
DpnI	GATC	4 cut(s)	129, 463, 492, 629
DpnII	GATC	4 cut(s)	127, 461, 490, 627
DraI	TTTAAA	1 cut(s)	97
Ecl136II	GAGCTC	1 cut(s)	745
Eco147I	AGGCCT	1 cut(s)	673
Eco24I	GRGCYC	1 cut(s)	747
Eco47I	GGWCC	1 cut(s)	443
Eco53kI	GAGCTC	1 cut(s)	745
Eco57I	CTGAAG	1 cut(s)	396
EcoICRI	GAGCTC	1 cut(s)	745
EcoRI	GAATTC	1 cut(s)	958
EcoRII	CCWGG	1 cut(s)	673
EcoT22I	ATGCAT	1 cut(s)	555
EcoT38I	GRGCYC	1 cut(s)	747
Esp3I	CGTCTC	1 cut(s)	371
FaeI	CATG	7 cut(s)	341, 365, 443, 515, 557, 623, 946
FaqI	GGGAC	1 cut(s)	165
FatI	CATG	7 cut(s)	337, 361, 439, 511, 553, 619, 942
Fnu4HI	GCNGC	1 cut(s)	456
FokI	GGATG	2 cut(s)	620, 647
FriOI	GRGCYC	1 cut(s)	747
Fsp4HI	GCNGC	1 cut(s)	456
FspBI	CTAG	1 cut(s)	870
GlaI	GCGC	1 cut(s)	768
GluI	GCNGC	1 cut(s)	456
GsuI	CTGGAG	1 cut(s)	696
HaeIII	GGCC	1 cut(s)	673
HhaI	GCGC	1 cut(s)	769
Hin1II	CATG	7 cut(s)	341, 365, 443, 515, 557, 623, 946
Hin6I	GCGC	1 cut(s)	767
HinP1I	GCGC	1 cut(s)	767
HinfI	GANTC	9 cut(s)	67, 163, 307, 407, 599, 685, 788, 838, 844
HphI	GGTGA	4 cut(s)	24, 128, 158, 161
Hpy166II	GTNNAC	1 cut(s)	115
Hpy188I	TCNGA	4 cut(s)	223, 565, 697, 843
Hpy8I	GTNNAC	1 cut(s)	115
HpyAV	CCTTC	1 cut(s)	146
HpyCH4III	ACNGT	4 cut(s)	170, 274, 382, 860
HpyCH4V	TGCA	4 cut(s)	455, 553, 660, 886
Hsp92II	CATG	7 cut(s)	341, 365, 443, 515, 557, 623, 946
HspAI	GCGC	1 cut(s)	767
Kzo9I	GATC	4 cut(s)	127, 461, 490, 627
LmnI	GCTCC	1 cut(s)	750
Lsp1109I	GCAGC	1 cut(s)	467
LweI	GCATC	3 cut(s)	442, 540, 669
MaeI	CTAG	1 cut(s)	870
MalI	GATC	4 cut(s)	129, 463, 492, 629
MboI	GATC	4 cut(s)	127, 461, 490, 627
MboII	GAAGA	4 cut(s)	122, 402, 462, 489
MfeI	CAATTG	1 cut(s)	103
MflI	RGATCY	1 cut(s)	127
MhlI	GDGCHC	1 cut(s)	747
MluI	ACGCGT	1 cut(s)	293
MlyI	GAGTC	1 cut(s)	679
MmeI	TCCRAC	1 cut(s)	688
MnlI	CCTC	2 cut(s)	663, 671
Mph1103I	ATGCAT	1 cut(s)	555
MseI	TTAA	4 cut(s)	96, 209, 252, 543
MslI	CAYNNNNRTG	4 cut(s)	171, 360, 366, 618
MspA1I	CMGCKG	1 cut(s)	416
MspR9I	CCNGG	1 cut(s)	675
MunI	CAATTG	1 cut(s)	103
MvaI	CCWGG	1 cut(s)	675
MvnI	CGCG	2 cut(s)	295, 769
NdeII	GATC	4 cut(s)	127, 461, 490, 627
NlaIII	CATG	7 cut(s)	341, 365, 443, 515, 557, 623, 946
NsiI	ATGCAT	1 cut(s)	555
NspI	RCATGY	1 cut(s)	946
PaqCI	CACCTGC	1 cut(s)	147
PceI	AGGCCT	1 cut(s)	673
PciI	ACATGT	1 cut(s)	942
PfeI	GAWTC	8 cut(s)	67, 163, 307, 407, 599, 788, 838, 844
PflMI	CCANNNNNTGG	1 cut(s)	517
PkrI	GCNGC	1 cut(s)	457
PleI	GAGTC	1 cut(s)	679
PpsI	GAGTC	1 cut(s)	679
PscI	ACATGT	1 cut(s)	942
Psp124BI	GAGCTC	1 cut(s)	747
Psp6I	CCWGG	1 cut(s)	673
PspGI	CCWGG	1 cut(s)	673
PspPI	GGNCC	1 cut(s)	443
PsuI	RGATCY	1 cut(s)	127
PvuII	CAGCTG	1 cut(s)	416
RsaI	GTAC	2 cut(s)	354, 850
RsaNI	GTAC	2 cut(s)	353, 849
RseI	CAYNNNNRTG	4 cut(s)	171, 360, 366, 618
SacI	GAGCTC	1 cut(s)	747
SaqAI	TTAA	4 cut(s)	96, 209, 252, 543
SatI	GCNGC	1 cut(s)	456
Sau3AI	GATC	4 cut(s)	127, 461, 490, 627
Sau96I	GGNCC	1 cut(s)	443
SchI	GAGTC	1 cut(s)	679
ScrFI	CCNGG	1 cut(s)	675
SduI	GDGCHC	1 cut(s)	747
SetI	ASST	6 cut(s)	37, 141, 418, 448, 529, 747
SfaNI	GCATC	3 cut(s)	442, 540, 669
SinI	GGWCC	1 cut(s)	443
SmiMI	CAYNNNNRTG	4 cut(s)	171, 360, 366, 618
SseBI	AGGCCT	1 cut(s)	673
SspMI	CTAG	1 cut(s)	870
SstI	GAGCTC	1 cut(s)	747
StuI	AGGCCT	1 cut(s)	673
StyD4I	CCNGG	1 cut(s)	673
TaaI	ACNGT	4 cut(s)	170, 274, 382, 860
TaqI	TCGA	1 cut(s)	479
TatI	WGTACW	1 cut(s)	352
TfiI	GAWTC	8 cut(s)	67, 163, 307, 407, 599, 788, 838, 844
Tru1I	TTAA	4 cut(s)	96, 209, 252, 543
Tru9I	TTAA	4 cut(s)	96, 209, 252, 543
TscAI	CASTG	3 cut(s)	318, 609, 863
TseI	GCWGC	1 cut(s)	455
TspRI	CASTG	3 cut(s)	318, 609, 863
Van91I	CCANNNNNTGG	1 cut(s)	517
VpaK11BI	GGWCC	1 cut(s)	443
XapI	RAATTY	5 cut(s)	466, 779, 864, 911, 958
XceI	RCATGY	1 cut(s)	946
XcmI	CCANNNNNNNNNTGG	1 cut(s)	671
XspI	CTAG	1 cut(s)	870
Zsp2I	ATGCAT	1 cut(s)	555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.