Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0013973

Physical Location & Seq

Genomic Coordinates Reverse (-)

15171223 .. 15173525

Gene Structure 2303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

ATGAGAATTTGGAAGCTGGGTTTTGCTGGGTTTCTTGTTGCTGCCTTTGTGGTGGGGTTTGGTTCAGGGGAGCAGGCCCGCACTGAGAGAATTTCAGGTAGTGCTGGTGATGTTTTGGACGATGACCCAGTAGGAAGGTTGAAAGTTTTTGTGTATGAGCTTCCAAGCAAATACAACAAGAAGATTCTTCAGAAGGATCCCAGATGCCTCAACCATATGTTTGCAGCTGAGATCTTTATGCATCGGTTTCTCCTGTCTAGCCCCGTCCGAACCCTTAATCCTGAAGAAGCAGATTGGTTTTATACTCCTGTTTATACCACTTGTGACCTGACCCCCAATGGCCTTCCTTTGCCTTTTAAGTCACCACGGATGATGAGGAGTGCAATACAACTCATTTCTTCGAATTGGCCTTACTGGAACCGGACAGAAGGTGCTGATCACTTTTTTGTAGTGCCTCATGACTTTGGAGCATGTTTTCATTATCAGGAAGAGAAGGCGATTGAAAGAGGAACTCTTCGCATGCTCCAACGTGCAACTTTGGTTCAGACTTTTGGGCAAAAGAATCATGTTTGCTTGAAAGAGGGCGCAATAACAGTTCCTCCTTATGCTCCTCCACAGAAGATGCAAACCCACCTAATTCCTGAGAAAACTCCTAGGTCCATCTTTGTTTACTTCCGAGGATTATTTTATGATGTGGGAAATGACCCAGAAGGTGGTTATTATGCAAGAGGTGCACGAGCAGCGGTGTGGGAGAACTTCAAAGACAATCCGCTTTTTGACATCTCTACCGAGCACCCCACCACATACTATGAGGACATGCAACGAGCAGTCTTTTGTTTATGCCCTCTCGGCTGGGCTCCTTGGAGTCCAAGATTGGTTGAAGCAGTGATTTTTGGCTGCATTCCTGTTATCATAGCAGACGACATTGTTCTACCCTTTGCCGATGCCATCCCTTGGGAAGAGATTGGCGTGTTTGTAGATGAGAAAGATGTCCCCAACTTGGACACCATACTCACTTCCATCCCACCTGAACTGATACTGAGAAAGCAGAGATTGCTCGCTAACCCTTCAATGAAGCAAGCCATGTTATTCCCACAACCTGCCGAAGCAGGAGATGCTTTCCATCAAGTTCTAAACGGACTTGCGCGCAAGTTGCCGCACGGCCCTGATGTTTTCTTGAAGCCGGGTGAGAAGATCCTGAACTGGACCGCAGGGCCAGTGGGCGACCTGAAACCATGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009832 GO:0009834 GO:0009987 GO:0010383 GO:0010410 GO:0010413 GO:0010417 GO:0012505 GO:0015020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016763 GO:0031410 GO:0031982 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045491 GO:0045492 GO:0047517 GO:0070589 GO:0070592 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0080116 GO:0097708 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exostosin

Protein Analysis

414

Amino Acids

46.74

Weight (kDa)

6.22

Isoelectric Point (pI)

40.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exostosin_GT47	PF03016	46 - 341	4.5e-76	Exostosin GT47 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013973)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61840
fragaria_vesca	FvH4_5g09690
malus_domestica	MD06G1129200.v1.1 MD14G1146200.v1.1
prunus_persica	Prupe.5G140500_v2.0.a1
pyrus_communis	pycom06g12080 pycom14g12110
rosa_chinensis	RchiOBHm_Chr7g0188551
rosa_laevigata	RLG00000004684
rosa_multiflora	Rmu_sc0001576.1_g000011 Rmu_sc0016427.1_g000011
rosa_roxburghii	Rroxscaffold_3G00266260
rosa_samantha	Rh7AG096100 Rh7BG097900 Rh7CG098900 Rh7DG098100
rosa_wichuraiana	Rw7G008300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1108
AccB7I	CCANNNNNTGG	2 cut(s)	713, 954
AccII	CGCG	1 cut(s)	1147
AciI	CCGC	5 cut(s)	79, 743, 770, 1157, 1209
AclWI	GGATC	3 cut(s)	191, 204, 1189
AcsI	RAATTY	2 cut(s)	6, 90
AcuI	CTGAAG	2 cut(s)	173, 303
AfiI	CCNNNNNNNGG	3 cut(s)	713, 954, 1000
AgsI	TTSAA	7 cut(s)	142, 503, 577, 760, 881, 1071, 1180
AloI	GAACNNNNNNTCC	2 cut(s)	262, 294
AluBI	AGCT	3 cut(s)	16, 160, 227
AluI	AGCT	3 cut(s)	16, 160, 227
Alw21I	GWGCWC	2 cut(s)	736, 795
Alw44I	GTGCAC	1 cut(s)	732
AlwI	GGATC	3 cut(s)	191, 204, 1189
AoxI	GGCC	5 cut(s)	75, 340, 407, 1162, 1214
ApaLI	GTGCAC	1 cut(s)	732
ApeKI	GCWGC	4 cut(s)	41, 224, 740, 897
ApoI	RAATTY	2 cut(s)	6, 90
AspA2I	CCTAGG	1 cut(s)	653
AspLEI	GCGC	3 cut(s)	587, 1147, 1149
AspS9I	GGNCC	5 cut(s)	76, 657, 1163, 1206, 1214
AsuC2I	CCSGG	1 cut(s)	1185
AsuHPI	GGTGA	3 cut(s)	119, 354, 1199
AsuII	TTCGAA	1 cut(s)	401
AvaII	GGWCC	2 cut(s)	657, 1206
AvrII	CCTAGG	1 cut(s)	653
BaeGI	GKGCMC	1 cut(s)	736
BamHI	GGATCC	1 cut(s)	196
BanII	GRGCYC	1 cut(s)	859
BauI	CACGAG	1 cut(s)	735
Bbv12I	GWGCWC	2 cut(s)	736, 795
BbvI	GCAGC	4 cut(s)	28, 236, 752, 884
BccI	CCATC	4 cut(s)	668, 956, 1028, 1131
BceAI	ACGGC	1 cut(s)	1177
BclI	TGATCA	1 cut(s)	436
BcnI	CCSGG	1 cut(s)	1185
BfaI	CTAG	2 cut(s)	258, 654
BfuAI	ACCTGC	1 cut(s)	1108
BglI	GCCNNNNNGGC	1 cut(s)	849
BglII	AGATCT	1 cut(s)	231
BisI	GCNGC	5 cut(s)	42, 225, 741, 898, 1157
BlnI	CCTAGG	1 cut(s)	653
BlsI	GCNGC	5 cut(s)	43, 226, 742, 899, 1158
Bme1390I	CCNGG	1 cut(s)	1185
Bme18I	GGWCC	2 cut(s)	657, 1206
BmgT120I	GGNCC	5 cut(s)	76, 657, 1163, 1206, 1214
BmiI	GGNNCC	3 cut(s)	198, 419, 858
BmrFI	CCNGG	1 cut(s)	1185
BmrI	ACTGGG	1 cut(s)	122
BmsI	GCATC	5 cut(s)	194, 250, 612, 934, 1105
BmuI	ACTGGG	1 cut(s)	122
Bpu14I	TTCGAA	1 cut(s)	401
BpuMI	CCSGG	1 cut(s)	1185
BsaJI	CCNNGG	6 cut(s)	365, 653, 676, 860, 953, 1235
BsaWI	WCCGGW	1 cut(s)	420
BsaXI	ACNNNNNCTCC	2 cut(s)	583, 613
Bsc4I	CCNNNNNNNGG	3 cut(s)	713, 954, 1000
Bse1I	ACTGG	4 cut(s)	128, 419, 1208, 1217
BseDI	CCNNGG	6 cut(s)	365, 653, 676, 860, 953, 1235
BseGI	GGATG	3 cut(s)	375, 948, 1020
BseLI	CCNNNNNNNGG	3 cut(s)	713, 954, 1000
BseMII	CTCAG	4 cut(s)	75, 219, 633, 1031
BseNI	ACTGG	4 cut(s)	128, 419, 1208, 1217
BsePI	GCGCGC	1 cut(s)	1145
BseRI	GAGGAG	2 cut(s)	391, 600
BseSI	GKGCMC	1 cut(s)	736
BseXI	GCAGC	4 cut(s)	28, 236, 752, 884
BseYI	CCCAGC	3 cut(s)	16, 26, 852
Bsh1236I	CGCG	1 cut(s)	1147
BshFI	GGCC	5 cut(s)	77, 342, 409, 1164, 1216
BsiHKAI	GWGCWC	2 cut(s)	736, 795
BsiSI	CCGG	2 cut(s)	421, 1184
BslFI	GGGAC	1 cut(s)	977
BslI	CCNNNNNNNGG	3 cut(s)	713, 954, 1000
BsmFI	GGGAC	1 cut(s)	977
BsmI	GAATGC	1 cut(s)	900
BsnI	GGCC	5 cut(s)	77, 342, 409, 1164, 1216
Bsp119I	TTCGAA	1 cut(s)	401
Bsp1286I	GDGCHC	3 cut(s)	736, 795, 859
Bsp143I	GATC	4 cut(s)	196, 231, 436, 1194
Bsp19I	CCATGG	1 cut(s)	1235
BspACI	CCGC	5 cut(s)	79, 743, 770, 1157, 1209
BspANI	GGCC	5 cut(s)	77, 342, 409, 1164, 1216
BspCNI	CTCAG	4 cut(s)	76, 220, 634, 1032
BspFNI	CGCG	1 cut(s)	1147
BspHI	TCATGA	1 cut(s)	457
BspLI	GGNNCC	3 cut(s)	198, 419, 858
BspMI	ACCTGC	1 cut(s)	1108
BspPI	GGATC	3 cut(s)	191, 204, 1189
BspT104I	TTCGAA	1 cut(s)	401
BsrI	ACTGG	4 cut(s)	128, 419, 1208, 1217
BssECI	CCNNGG	6 cut(s)	365, 653, 676, 860, 953, 1235
BssHII	GCGCGC	1 cut(s)	1145
BssMI	GATC	4 cut(s)	196, 231, 436, 1194
BssSI	CACGAG	1 cut(s)	735
BssT1I	CCWWGG	4 cut(s)	653, 860, 953, 1235
Bst2BI	CACGAG	1 cut(s)	735
Bst4CI	ACNGT	1 cut(s)	595
Bst6I	CTCTTC	3 cut(s)	483, 519, 954
BstAPI	GCANNNNNTGC	3 cut(s)	731, 1054, 1115
BstBI	TTCGAA	1 cut(s)	401
BstC8I	GCNNGC	6 cut(s)	75, 79, 521, 1059, 1080, 1147
BstDEI	CTNAG	4 cut(s)	84, 228, 642, 1040
BstDSI	CCRYGG	2 cut(s)	365, 1235
BstF5I	GGATG	3 cut(s)	375, 948, 1020
BstFNI	CGCG	1 cut(s)	1147
BstHHI	GCGC	3 cut(s)	587, 1147, 1149
BstKTI	GATC	4 cut(s)	199, 234, 439, 1197
BstMBI	GATC	4 cut(s)	196, 231, 436, 1194
BstMWI	GCNNNNNNNGC	6 cut(s)	731, 740, 849, 1054, 1115, 1153
BstNSI	RCATGY	3 cut(s)	474, 523, 820
BstSCI	CCNGG	1 cut(s)	1183
BstSLI	GKGCMC	1 cut(s)	736
BstUI	CGCG	1 cut(s)	1147
BstV1I	GCAGC	4 cut(s)	28, 236, 752, 884
BstX2I	RGATCY	3 cut(s)	196, 231, 1194
BstYI	RGATCY	3 cut(s)	196, 231, 1194
BsuRI	GGCC	5 cut(s)	77, 342, 409, 1164, 1216
BtgI	CCRYGG	2 cut(s)	365, 1235
BtsCI	GGATG	3 cut(s)	375, 948, 1020
BtsI	GCAGTG	1 cut(s)	891
BtsIMutI	CAGTG	3 cut(s)	81, 891, 1224
BveI	ACCTGC	1 cut(s)	1108
Cac8I	GCNNGC	6 cut(s)	75, 79, 521, 1059, 1080, 1147
CciI	TCATGA	1 cut(s)	457
CfoI	GCGC	3 cut(s)	587, 1147, 1149
Cfr13I	GGNCC	5 cut(s)	76, 657, 1163, 1206, 1214
CviAII	CATG	7 cut(s)	458, 471, 520, 566, 817, 1084, 1236
DdeI	CTNAG	4 cut(s)	84, 228, 642, 1040
DpnI	GATC	4 cut(s)	198, 233, 438, 1196
DpnII	GATC	4 cut(s)	196, 231, 436, 1194
Eam1104I	CTCTTC	3 cut(s)	483, 519, 954
EarI	CTCTTC	3 cut(s)	483, 519, 954
Eco130I	CCWWGG	4 cut(s)	653, 860, 953, 1235
Eco24I	GRGCYC	1 cut(s)	859
Eco47I	GGWCC	2 cut(s)	657, 1206
Eco57I	CTGAAG	2 cut(s)	173, 303
EcoT14I	CCWWGG	4 cut(s)	653, 860, 953, 1235
EcoT22I	ATGCAT	1 cut(s)	243
EcoT38I	GRGCYC	1 cut(s)	859
ErhI	CCWWGG	4 cut(s)	653, 860, 953, 1235
FaeI	CATG	7 cut(s)	461, 474, 523, 569, 820, 1087, 1239
FaqI	GGGAC	1 cut(s)	977
FatI	CATG	7 cut(s)	457, 470, 519, 565, 816, 1083, 1235
FauI	CCCGC	1 cut(s)	86
FauNDI	CATATG	1 cut(s)	216
FbaI	TGATCA	1 cut(s)	436
Fnu4HI	GCNGC	5 cut(s)	42, 225, 741, 898, 1157
FokI	GGATG	3 cut(s)	382, 935, 1007
FriOI	GRGCYC	1 cut(s)	859
Fsp4HI	GCNGC	5 cut(s)	42, 225, 741, 898, 1157
FspBI	CTAG	2 cut(s)	258, 654
GlaI	GCGC	3 cut(s)	586, 1146, 1148
GluI	GCNGC	5 cut(s)	42, 225, 741, 898, 1157
GsaI	CCCAGC	3 cut(s)	20, 30, 856
HaeIII	GGCC	5 cut(s)	77, 342, 409, 1164, 1216
HapII	CCGG	2 cut(s)	421, 1184
HhaI	GCGC	3 cut(s)	587, 1147, 1149
Hin1II	CATG	7 cut(s)	461, 474, 523, 569, 820, 1087, 1239
Hin6I	GCGC	3 cut(s)	585, 1145, 1147
HinP1I	GCGC	3 cut(s)	585, 1145, 1147
HinfI	GANTC	3 cut(s)	184, 562, 865
HpaII	CCGG	2 cut(s)	421, 1184
HphI	GGTGA	3 cut(s)	119, 354, 1199
Hpy166II	GTNNAC	2 cut(s)	670, 734
Hpy188I	TCNGA	4 cut(s)	192, 269, 546, 677
Hpy188III	TCNNGA	6 cut(s)	281, 458, 485, 641, 1177, 1198
Hpy8I	GTNNAC	2 cut(s)	670, 734
HpyAV	CCTTC	7 cut(s)	129, 187, 353, 422, 487, 704, 1077
HpyCH4III	ACNGT	1 cut(s)	595
HpyCH4IV	ACGT	1 cut(s)	529
HpyCH4V	TGCA	9 cut(s)	224, 241, 383, 533, 625, 725, 734, 820, 900
HpyF10VI	GCNNNNNNNGC	6 cut(s)	731, 740, 849, 1054, 1115, 1153
HpyF3I	CTNAG	4 cut(s)	84, 228, 642, 1040
HpySE526I	ACGT	1 cut(s)	529
Hsp92II	CATG	7 cut(s)	461, 474, 523, 569, 820, 1087, 1239
HspAI	GCGC	3 cut(s)	585, 1145, 1147
Ksp22I	TGATCA	1 cut(s)	436
Kzo9I	GATC	4 cut(s)	196, 231, 436, 1194
LmnI	GCTCC	5 cut(s)	70, 467, 528, 613, 862
Lsp1109I	GCAGC	4 cut(s)	28, 236, 752, 884
LweI	GCATC	5 cut(s)	194, 250, 612, 934, 1105
MaeI	CTAG	2 cut(s)	258, 654
MaeII	ACGT	1 cut(s)	529
MaeIII	GTNAC	2 cut(s)	323, 360
MalI	GATC	4 cut(s)	198, 233, 438, 1196
MboI	GATC	4 cut(s)	196, 231, 436, 1194
MboII	GAAGA	9 cut(s)	179, 193, 296, 390, 500, 506, 631, 971, 1204
MflI	RGATCY	3 cut(s)	196, 231, 1194
MhlI	GDGCHC	3 cut(s)	736, 795, 859
MluCI	AATT	4 cut(s)	6, 90, 403, 636
MlyI	GAGTC	1 cut(s)	874
MmeI	TCCRAC	1 cut(s)	550
Mph1103I	ATGCAT	1 cut(s)	243
MseI	TTAA	2 cut(s)	276, 357
MspA1I	CMGCKG	2 cut(s)	227, 743
MspI	CCGG	2 cut(s)	421, 1184
MspR9I	CCNGG	1 cut(s)	1185
Mva1269I	GAATGC	1 cut(s)	900
MvnI	CGCG	1 cut(s)	1147
MwoI	GCNNNNNNNGC	6 cut(s)	731, 740, 849, 1054, 1115, 1153
NciI	CCSGG	1 cut(s)	1185
NcoI	CCATGG	1 cut(s)	1235
NdeI	CATATG	1 cut(s)	216
NdeII	GATC	4 cut(s)	196, 231, 436, 1194
NlaIII	CATG	7 cut(s)	461, 474, 523, 569, 820, 1087, 1239
NlaIV	GGNNCC	3 cut(s)	198, 419, 858
NmeAIII	GCCGAG	1 cut(s)	828
NmuCI	GTSAC	2 cut(s)	323, 360
NsiI	ATGCAT	1 cut(s)	243
NspI	RCATGY	3 cut(s)	474, 523, 820
NspV	TTCGAA	1 cut(s)	401
PaeI	GCATGC	1 cut(s)	523
PagI	TCATGA	1 cut(s)	457
PauI	GCGCGC	1 cut(s)	1145
PctI	GAATGC	1 cut(s)	900
PfeI	GAWTC	2 cut(s)	184, 562
PflMI	CCANNNNNTGG	2 cut(s)	713, 954
PkrI	GCNGC	5 cut(s)	43, 226, 742, 899, 1158
PleI	GAGTC	1 cut(s)	873
PpsI	GAGTC	1 cut(s)	873
PspFI	CCCAGC	3 cut(s)	16, 26, 852
PspN4I	GGNNCC	3 cut(s)	198, 419, 858
PspPI	GGNCC	5 cut(s)	76, 657, 1163, 1206, 1214
PsuI	RGATCY	3 cut(s)	196, 231, 1194
PteI	GCGCGC	1 cut(s)	1145
PvuII	CAGCTG	1 cut(s)	227
SaqAI	TTAA	2 cut(s)	276, 357
SatI	GCNGC	5 cut(s)	42, 225, 741, 898, 1157
Sau3AI	GATC	4 cut(s)	196, 231, 436, 1194
Sau96I	GGNCC	5 cut(s)	76, 657, 1163, 1206, 1214
SchI	GAGTC	1 cut(s)	874
ScrFI	CCNGG	1 cut(s)	1185
SduI	GDGCHC	3 cut(s)	736, 795, 859
SfaNI	GCATC	5 cut(s)	194, 250, 612, 934, 1105
SfuI	TTCGAA	1 cut(s)	401
SinI	GGWCC	2 cut(s)	657, 1206
SphI	GCATGC	1 cut(s)	523
Sse9I	AATT	4 cut(s)	6, 90, 403, 636
SsiI	CCGC	5 cut(s)	79, 743, 770, 1157, 1209
SspMI	CTAG	2 cut(s)	258, 654
StyD4I	CCNGG	1 cut(s)	1183
StyI	CCWWGG	4 cut(s)	653, 860, 953, 1235
TaaI	ACNGT	1 cut(s)	595
TaiI	ACGT	1 cut(s)	532
TaqI	TCGA	1 cut(s)	401
TasI	AATT	4 cut(s)	6, 90, 403, 636
TauI	GCSGC	1 cut(s)	1159
TfiI	GAWTC	2 cut(s)	184, 562
Tru1I	TTAA	2 cut(s)	276, 357
Tru9I	TTAA	2 cut(s)	276, 357
TscAI	CASTG	3 cut(s)	88, 891, 1224
TseFI	GTSAC	2 cut(s)	323, 360
TseI	GCWGC	4 cut(s)	41, 224, 740, 897
Tsp45I	GTSAC	2 cut(s)	323, 360
TspDTI	ATGAA	2 cut(s)	467, 1088
TspGWI	ACGGA	2 cut(s)	382, 1152
TspRI	CASTG	3 cut(s)	88, 891, 1224
Van91I	CCANNNNNTGG	2 cut(s)	713, 954
VneI	GTGCAC	1 cut(s)	732
VpaK11BI	GGWCC	2 cut(s)	657, 1206
XapI	RAATTY	2 cut(s)	6, 90
XceI	RCATGY	3 cut(s)	474, 523, 820
XmaJI	CCTAGG	1 cut(s)	653
XspI	CTAG	2 cut(s)	258, 654
Zsp2I	ATGCAT	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.