Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0007705

Physical Location & Seq

Genomic Coordinates Reverse (-)

18595158 .. 18596328

Gene Structure 1171 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGCTCTTCATGCATGAGAACTGGTCTAAGACGTCAATTCTATCCAAAATGAAAGATCTGGCTGAGAGAAGGAATTTAGAAGACTTAACGATCGGCCCTGTCCTTACATTCACGACTGAAGCAATGCTAGAACACAAGAATAAATTGCTTCAGATACCAGGTTCAAAGCTACTCTTTGGGGGCGAACCTTTGACAGATCATTCCATTCCACCTGTATATGGTGCTATAAAACCTACAGCCGTTTATGTTCCACTTGAAGAAATACTGAAGGAAAAGAATTATGAACTCGTAACAAGAGAAATTTTTGGGCCATTTCAGATTGTCACCGACTATAAGAACGATCAACTCCCACTGGTGTTGGATGCTCTAGAGAGGATGCATGCACATTTAACAGCTGCTGTCGTTTCAAACGATCCACTGTTTCTACAGGAAGTTATTGGGAACACGGTAAATGGAACTACTTATGCTGGACTGAGAGCAAGAACAACTGGAGCTCCACAGAATCACTGGTTTGGACCGGCTGGAGACCCGAGAGGAGCTGGCATTGGGACCCCAGAAGCAATAAAGCTGGTGTGGTCTTGCCATAGAGAGATCATCTATGATGTTGGTCCACTGCCAAAGCAATGGCAAACTCCACCTTCTACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006536 GO:0006560 GO:0006562 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009063 GO:0009064 GO:0009065 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009987 GO:0010133 GO:0016054 GO:0016491 GO:0016645 GO:0016646 GO:0019752 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046483 GO:0046700 GO:0046872 GO:0046914 GO:0050896 GO:0050897 GO:0055114 GO:0071704 GO:0072593 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00250 ko00330 ko01100 map00250 map00330 map01100

Pfam Domains

Protein Families

Aldedh

Protein Analysis

216

Amino Acids

23.94

Weight (kDa)

5.97

Isoelectric Point (pI)

42.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007705)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62530
fragaria_vesca	FvH4_5g15350 FvH4_5g15350 FvH4_5g15350 FvH4_5g15350 FvH4_5g15350
malus_domestica	MD06G1189000.v1.1 MD14G1196000.v1.1
prunus_persica	Prupe.5G187700_v2.0.a1 Prupe.5G187700_v2.0.a1
pyrus_communis	pycom06g16790 pycom14g16270
rosa_chinensis	RchiOBHm_Chr7g0180721
rosa_laevigata	RLG00000005237
rosa_multiflora	Rmu_co8325821.1_g000001 Rmu_sc0007457.1_g000024 Rmu_sc0032324.1_g000001 Rmu_sc0042569.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272620
rosa_rugosa	Rorug06G0435200
rosa_samantha	Rh7AG036900 Rh7BG036700 Rh7DG036900
rosa_wichuraiana	Rw7G003050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	35
AclWI	GGATC	1 cut(s)	407
AcsI	RAATTY	2 cut(s)	73, 300
AcuI	CTGAAG	3 cut(s)	134, 138, 287
AcyI	GRCGYC	1 cut(s)	32
AfiI	CCNNNNNNNGG	1 cut(s)	218
AgsI	TTSAA	3 cut(s)	165, 257, 408
AjnI	CCWGG	1 cut(s)	157
AluBI	AGCT	5 cut(s)	169, 395, 494, 539, 568
AluI	AGCT	5 cut(s)	169, 395, 494, 539, 568
Alw21I	GWGCWC	1 cut(s)	496
Alw26I	GTCTC	1 cut(s)	519
AlwI	GGATC	1 cut(s)	407
AlwNI	CAGNNNCTG	1 cut(s)	398
Ama87I	CYCGRG	1 cut(s)	529
AoxI	GGCC	2 cut(s)	94, 308
ApeKI	GCWGC	1 cut(s)	395
ApoI	RAATTY	2 cut(s)	73, 300
AspS9I	GGNCC	5 cut(s)	95, 308, 515, 549, 608
AsuHPI	GGTGA	1 cut(s)	316
AvaI	CYCGRG	1 cut(s)	529
AvaII	GGWCC	3 cut(s)	515, 549, 608
BanII	GRGCYC	1 cut(s)	496
BbsI	GAAGAC	1 cut(s)	87
Bbv12I	GWGCWC	1 cut(s)	496
BbvI	GCAGC	1 cut(s)	382
BceAI	ACGGC	1 cut(s)	224
BciT130I	CCWGG	1 cut(s)	159
BcoDI	GTCTC	1 cut(s)	519
BfaI	CTAG	2 cut(s)	128, 368
BfmI	CTRYAG	2 cut(s)	234, 425
BglII	AGATCT	1 cut(s)	55
BisI	GCNGC	1 cut(s)	396
BlsI	GCNGC	1 cut(s)	397
Bme1390I	CCNGG	1 cut(s)	159
Bme18I	GGWCC	3 cut(s)	515, 549, 608
BmeT110I	CYCGRG	1 cut(s)	529
BmgT120I	GGNCC	5 cut(s)	95, 308, 515, 549, 608
BmiI	GGNNCC	2 cut(s)	550, 551
BmrFI	CCNGG	1 cut(s)	159
BmsI	GCATC	2 cut(s)	352, 366
BpiI	GAAGAC	1 cut(s)	87
BpmI	CTGGAG	2 cut(s)	510, 543
BsaHI	GRCGYC	1 cut(s)	32
BsaI	GGTCTC	1 cut(s)	519
BsaXI	ACNNNNNCTCC	2 cut(s)	478, 508
Bsc4I	CCNNNNNNNGG	1 cut(s)	218
Bse118I	RCCGGY	1 cut(s)	517
Bse1I	ACTGG	4 cut(s)	26, 357, 493, 512
Bse3DI	GCAATG	2 cut(s)	129, 629
BseBI	CCWGG	1 cut(s)	159
BseGI	GGATG	2 cut(s)	367, 381
BseLI	CCNNNNNNNGG	1 cut(s)	218
BseMI	GCAATG	2 cut(s)	129, 629
BseMII	CTCAG	2 cut(s)	54, 464
BseNI	ACTGG	4 cut(s)	26, 357, 493, 512
BseRI	GAGGAG	1 cut(s)	549
BseXI	GCAGC	1 cut(s)	382
Bsh1285I	CGRYCG	1 cut(s)	93
BshFI	GGCC	2 cut(s)	96, 310
BsiEI	CGRYCG	1 cut(s)	93
BsiHKAI	GWGCWC	1 cut(s)	496
BsiHKCI	CYCGRG	1 cut(s)	529
BsiSI	CCGG	1 cut(s)	518
BslFI	GGGAC	1 cut(s)	562
BslI	CCNNNNNNNGG	1 cut(s)	218
BsmAI	GTCTC	1 cut(s)	519
BsmFI	GGGAC	1 cut(s)	562
BsnI	GGCC	2 cut(s)	96, 310
Bso31I	GGTCTC	1 cut(s)	519
BsoBI	CYCGRG	1 cut(s)	529
Bsp1286I	GDGCHC	1 cut(s)	496
Bsp143I	GATC	6 cut(s)	55, 90, 196, 340, 412, 591
BspANI	GGCC	2 cut(s)	96, 310
BspCNI	CTCAG	2 cut(s)	55, 465
BspLI	GGNNCC	2 cut(s)	550, 551
BspPI	GGATC	1 cut(s)	407
BspQI	GCTCTTC	1 cut(s)	11
BspTNI	GGTCTC	1 cut(s)	519
BsrDI	GCAATG	2 cut(s)	129, 629
BsrFI	RCCGGY	1 cut(s)	517
BsrI	ACTGG	4 cut(s)	26, 357, 493, 512
BssAI	RCCGGY	1 cut(s)	517
BssMI	GATC	6 cut(s)	55, 90, 196, 340, 412, 591
BssNI	GRCGYC	1 cut(s)	32
Bst2UI	CCWGG	1 cut(s)	159
Bst4CI	ACNGT	2 cut(s)	420, 448
Bst6I	CTCTTC	1 cut(s)	11
BstACI	GRCGYC	1 cut(s)	32
BstC8I	GCNNGC	2 cut(s)	381, 541
BstDEI	CTNAG	3 cut(s)	27, 63, 473
BstF5I	GGATG	2 cut(s)	367, 381
BstKTI	GATC	6 cut(s)	58, 93, 199, 343, 415, 594
BstMAI	GTCTC	1 cut(s)	519
BstMBI	GATC	6 cut(s)	55, 90, 196, 340, 412, 591
BstMCI	CGRYCG	1 cut(s)	93
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BstNI	CCWGG	1 cut(s)	159
BstNSI	RCATGY	1 cut(s)	383
BstSCI	CCNGG	1 cut(s)	157
BstSFI	CTRYAG	2 cut(s)	234, 425
BstV1I	GCAGC	1 cut(s)	382
BstV2I	GAAGAC	1 cut(s)	87
BstX2I	RGATCY	1 cut(s)	55
BstXI	CCANNNNNNTGG	1 cut(s)	624
BstYI	RGATCY	1 cut(s)	55
BsuRI	GGCC	2 cut(s)	96, 310
BtsCI	GGATG	2 cut(s)	367, 381
BtsI	GCAGTG	1 cut(s)	611
BtsIMutI	CAGTG	4 cut(s)	350, 416, 505, 611
Cac8I	GCNNGC	2 cut(s)	381, 541
CaiI	CAGNNNCTG	1 cut(s)	398
Cfr10I	RCCGGY	1 cut(s)	517
Cfr13I	GGNCC	5 cut(s)	95, 308, 515, 549, 608
CsiI	ACCWGGT	1 cut(s)	157
CspCI	CAANNNNNGTGG	2 cut(s)	339, 374
CviAII	CATG	3 cut(s)	10, 14, 380
DdeI	CTNAG	3 cut(s)	27, 63, 473
DpnI	GATC	6 cut(s)	57, 92, 198, 342, 414, 593
DpnII	GATC	6 cut(s)	55, 90, 196, 340, 412, 591
Eam1104I	CTCTTC	1 cut(s)	11
EarI	CTCTTC	1 cut(s)	11
Ecl136II	GAGCTC	1 cut(s)	494
Eco24I	GRGCYC	1 cut(s)	496
Eco31I	GGTCTC	1 cut(s)	519
Eco47I	GGWCC	3 cut(s)	515, 549, 608
Eco53kI	GAGCTC	1 cut(s)	494
Eco57I	CTGAAG	3 cut(s)	134, 138, 287
Eco88I	CYCGRG	1 cut(s)	529
EcoICRI	GAGCTC	1 cut(s)	494
EcoO109I	RGGNCCY	1 cut(s)	549
EcoRII	CCWGG	1 cut(s)	157
EcoT22I	ATGCAT	2 cut(s)	15, 381
EcoT38I	GRGCYC	1 cut(s)	496
FaeI	CATG	3 cut(s)	13, 17, 383
FalI	AAGNNNNNCTT	2 cut(s)	158, 190
FaqI	GGGAC	1 cut(s)	562
FatI	CATG	3 cut(s)	9, 13, 379
Fnu4HI	GCNGC	1 cut(s)	396
FokI	GGATG	2 cut(s)	374, 388
FriOI	GRGCYC	1 cut(s)	496
Fsp4HI	GCNGC	1 cut(s)	396
FspBI	CTAG	2 cut(s)	128, 368
GluI	GCNGC	1 cut(s)	396
GsuI	CTGGAG	2 cut(s)	510, 543
HaeIII	GGCC	2 cut(s)	96, 310
HapII	CCGG	1 cut(s)	518
Hin1I	GRCGYC	1 cut(s)	32
Hin1II	CATG	3 cut(s)	13, 17, 383
HinfI	GANTC	1 cut(s)	502
HpaII	CCGG	1 cut(s)	518
HphI	GGTGA	1 cut(s)	316
Hpy166II	GTNNAC	1 cut(s)	611
Hpy188I	TCNGA	2 cut(s)	153, 318
Hpy188III	TCNNGA	2 cut(s)	112, 368
Hpy8I	GTNNAC	1 cut(s)	611
HpyAV	CCTTC	3 cut(s)	63, 262, 648
HpyCH4III	ACNGT	2 cut(s)	420, 448
HpyCH4IV	ACGT	1 cut(s)	32
HpyCH4V	TGCA	3 cut(s)	13, 379, 383
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
HpyF3I	CTNAG	3 cut(s)	27, 63, 473
HpySE526I	ACGT	1 cut(s)	32
Hsp92I	GRCGYC	1 cut(s)	32
Hsp92II	CATG	3 cut(s)	13, 17, 383
KflI	GGGWCCC	1 cut(s)	549
Kzo9I	GATC	6 cut(s)	55, 90, 196, 340, 412, 591
LguI	GCTCTTC	1 cut(s)	11
LmnI	GCTCC	3 cut(s)	491, 499, 536
Lsp1109I	GCAGC	1 cut(s)	382
LweI	GCATC	2 cut(s)	352, 366
MabI	ACCWGGT	1 cut(s)	157
MaeI	CTAG	2 cut(s)	128, 368
MaeII	ACGT	1 cut(s)	32
MaeIII	GTNAC	2 cut(s)	289, 322
MalI	GATC	6 cut(s)	57, 92, 198, 342, 414, 593
MboI	GATC	6 cut(s)	55, 90, 196, 340, 412, 591
MboII	GAAGA	2 cut(s)	92, 269
MflI	RGATCY	1 cut(s)	55
MhlI	GDGCHC	1 cut(s)	496
MluCI	AATT	5 cut(s)	36, 73, 143, 277, 300
MmeI	TCCRAC	1 cut(s)	339
MnlI	CCTC	2 cut(s)	366, 527
Mph1103I	ATGCAT	2 cut(s)	15, 381
MseI	TTAA	2 cut(s)	86, 389
MspA1I	CMGCKG	1 cut(s)	395
MspI	CCGG	1 cut(s)	518
MspR9I	CCNGG	1 cut(s)	159
MvaI	CCWGG	1 cut(s)	159
MwoI	GCNNNNNNNGC	1 cut(s)	10
NdeII	GATC	6 cut(s)	55, 90, 196, 340, 412, 591
NlaIII	CATG	3 cut(s)	13, 17, 383
NlaIV	GGNNCC	2 cut(s)	550, 551
NmuCI	GTSAC	1 cut(s)	322
NsiI	ATGCAT	2 cut(s)	15, 381
NspI	RCATGY	1 cut(s)	383
PaeI	GCATGC	1 cut(s)	383
PciSI	GCTCTTC	1 cut(s)	11
PcsI	WCGNNNNNNNCGW	1 cut(s)	408
PfeI	GAWTC	1 cut(s)	502
PkrI	GCNGC	1 cut(s)	397
Ple19I	CGATCG	1 cut(s)	93
PpuMI	RGGWCCY	1 cut(s)	549
Psp124BI	GAGCTC	1 cut(s)	496
Psp5II	RGGWCCY	1 cut(s)	549
Psp6I	CCWGG	1 cut(s)	157
PspGI	CCWGG	1 cut(s)	157
PspN4I	GGNNCC	2 cut(s)	550, 551
PspPI	GGNCC	5 cut(s)	95, 308, 515, 549, 608
PspPPI	RGGWCCY	1 cut(s)	549
PstNI	CAGNNNCTG	1 cut(s)	398
PsuI	RGATCY	1 cut(s)	55
PvuI	CGATCG	1 cut(s)	93
PvuII	CAGCTG	1 cut(s)	395
SacI	GAGCTC	1 cut(s)	496
SapI	GCTCTTC	1 cut(s)	11
SaqAI	TTAA	2 cut(s)	86, 389
SatI	GCNGC	1 cut(s)	396
Sau3AI	GATC	6 cut(s)	55, 90, 196, 340, 412, 591
Sau96I	GGNCC	5 cut(s)	95, 308, 515, 549, 608
ScrFI	CCNGG	1 cut(s)	159
SduI	GDGCHC	1 cut(s)	496
SexAI	ACCWGGT	1 cut(s)	157
SfaNI	GCATC	2 cut(s)	352, 366
SfcI	CTRYAG	2 cut(s)	234, 425
SinI	GGWCC	3 cut(s)	515, 549, 608
SphI	GCATGC	1 cut(s)	383
Sse9I	AATT	5 cut(s)	36, 73, 143, 277, 300
SspMI	CTAG	2 cut(s)	128, 368
SstI	GAGCTC	1 cut(s)	496
StyD4I	CCNGG	1 cut(s)	157
TaaI	ACNGT	2 cut(s)	420, 448
TaiI	ACGT	1 cut(s)	35
TasI	AATT	5 cut(s)	36, 73, 143, 277, 300
TfiI	GAWTC	1 cut(s)	502
Tru1I	TTAA	2 cut(s)	86, 389
Tru9I	TTAA	2 cut(s)	86, 389
TscAI	CASTG	4 cut(s)	357, 423, 512, 618
TseFI	GTSAC	1 cut(s)	322
TseI	GCWGC	1 cut(s)	395
Tsp45I	GTSAC	1 cut(s)	322
TspDTI	ATGAA	2 cut(s)	65, 297
TspRI	CASTG	4 cut(s)	357, 423, 512, 618
VpaK11BI	GGWCC	3 cut(s)	515, 549, 608
XapI	RAATTY	2 cut(s)	73, 300
XbaI	TCTAGA	1 cut(s)	367
XceI	RCATGY	1 cut(s)	383
XcmI	CCANNNNNNNNNTGG	1 cut(s)	504
XspI	CTAG	2 cut(s)	128, 368
ZraI	GACGTC	1 cut(s)	33
Zsp2I	ATGCAT	2 cut(s)	15, 381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.