pycom14g17000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0012489
Physical Location & Seq
Forward (+)
19098826 .. 19100053
1228 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1122 bp
ATGAAAACAATAGCCTTCCCAAACAACTCCACCTCTGCAAATTTGTTAGTTTTAGTTGTTGACACACCCAAATCTGTGATTCACACACCCAGTTTCATACCAATTTCCTCTCCCTTGGAGTGCAAGAAGGCTCAAAAAGTTCTTGCAATGGAAAAGGCAGGCAGGATTATCAGAAAATCAGTCCACACATTCCTTCTAAACTACCAATACTTCACCTCAATTGCAGCAGTCATTGCCTTACCCTTCTCAGCCTCAGTTCTCATCTCACAAGCACTTCTTCCGTATAGCTCCGCCCTCTTGCCCGCCGTCTACAACCGCCTGCACAGCCTTTTTGACGCTGCCGGCTTCCCTCCCTCCTTGGAATTCTTCACCATTCTCAACAACAAGCTCTCCCAAACCATCACCTCCTCAATCTTCACATTCCCATTCTCCCTCACCTTCCTCCTCATAACCAAGGCTTTTGTAATCCAATCTCTCAACCACCACCAAAAACCGAACACCTCGTCACACCCATCGTTTCTTTCCACAATTTCTGTCTACACCCCACTCCTCCACACTCATGTCTACAACTCGTTTTTGATCCTCTCTGCCAATGCAACAGTGTTTTCTCTCTTGTTCATCGCCTTCAATGTCCTCGAAGGATTCGGTTTCTCTTCTCCGAACACCCTCCTCTTCTTATCGGTATCTGGGGCAGTACTGTACTCCATTGTTCTTGCCAATGGACTCATAATATGCAATCTTGCATTGGTTCTATCAGGTGCACAAAAGAGTGGTGGTTACTTGGCACTTCTCAAGGCTTGTCTTTTGATCAGAGGAAGAACTTCAACGGCTCTCTGTCTTGCTCTGCCTGTCAGCTTAACACTAGCTGCAGTTGAAGCATTGTTCCAATACCGAGTCGTACGAGCTTATCATTTCGCAGGAAAGCTCGGATCTTCCATGGCTATGGAGGGTGTTTTCATTGCTTATTTGTACTCAATTCTTGTTGTTCTTGATACTACTGTGAGCTTTATGTTCTTGCAAAGCTGCAAGCCGAGTTCTCGGCGGATCGAACACAGAGACGACGAAGAAAGTCGTGGAGATTTGAAGGCTGTCAAAAGTGCTTCCATGAAAGTGTTTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

374

Amino Acids

40.67

Weight (kDa)

9.58

Isoelectric Point (pI)

34.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012489)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G61340 AT5G61340
fragaria_vesca FvH4_5g14500
malus_domestica MD06G1197900.v1.1 MD14G1205500.v1.1
prunus_persica Prupe.5G198800_v2.0.a1 Prupe.5G198800_v2.0.a1
pyrus_communis pycom06g17490 pycom14g17000
rosa_chinensis RchiOBHm_Chr7g0182161
rosa_laevigata RLG00000005145
rosa_multiflora Rmu_sc0000003.1_g000019
rosa_roxburghii Rroxscaffold_3G00271460
rosa_rugosa Rorug06G0445800
rosa_samantha Rh7AG048800 Rh7BG048700 Rh7CG050100 Rh7DG048000
rosa_wichuraiana Rw7G003980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 309, 537, 564
AciI CCGC 4 cut(s) 291, 303, 316, 1042
AclWI GGATC 3 cut(s) 574, 937, 1052
AcsI RAATTY 2 cut(s) 40, 362
AfaI GTAC 4 cut(s) 696, 701, 900, 971
AgsI TTSAA 4 cut(s) 628, 825, 875, 1084
AluBI AGCT 8 cut(s) 288, 388, 855, 866, 905, 925, 1005, 1023
AluI AGCT 8 cut(s) 288, 388, 855, 866, 905, 925, 1005, 1023
Alw21I GWGCWC 1 cut(s) 763
Alw26I GTCTC 1 cut(s) 1050
Alw44I GTGCAC 1 cut(s) 759
AlwI GGATC 3 cut(s) 574, 937, 1052
ApaLI GTGCAC 1 cut(s) 759
ApeKI GCWGC 4 cut(s) 224, 338, 866, 1023
ApoI RAATTY 2 cut(s) 40, 362
ArsI GACNNNNNNTTYG 2 cut(s) 488, 520
Asp700I GAANNNNTTC 1 cut(s) 820
AsuHPI GGTGA 4 cut(s) 205, 361, 394, 427
BaeGI GKGCMC 1 cut(s) 763
BaeI ACNNNNGTAYC 2 cut(s) 984, 1017
Bbv12I GWGCWC 1 cut(s) 763
BbvI GCAGC 4 cut(s) 236, 325, 853, 1010
BccI CCATC 2 cut(s) 407, 520
BceAI ACGGC 2 cut(s) 290, 843
BclI TGATCA 1 cut(s) 807
BcoDI GTCTC 1 cut(s) 1050
BfaI CTAG 1 cut(s) 863
BfmI CTRYAG 1 cut(s) 867
BisI GCNGC 4 cut(s) 225, 339, 867, 1024
BlsI GCNGC 4 cut(s) 226, 340, 868, 1025
BmcAI AGTACT 1 cut(s) 696
BmrI ACTGGG 1 cut(s) 84
BmuI ACTGGG 1 cut(s) 84
BpuEI CTTGAG 1 cut(s) 776
BsaJI CCNNGG 4 cut(s) 114, 357, 453, 936
BsaXI ACNNNNNCTCC 2 cut(s) 374, 404
Bse118I RCCGGY 1 cut(s) 341
Bse1I ACTGG 1 cut(s) 90
Bse3DI GCAATG 3 cut(s) 153, 231, 957
BseDI CCNNGG 4 cut(s) 114, 357, 453, 936
BseMI GCAATG 3 cut(s) 153, 231, 957
BseMII CTCAG 2 cut(s) 261, 267
BseNI ACTGG 1 cut(s) 90
BseRI GAGGAG 4 cut(s) 397, 434, 539, 659
BseSI GKGCMC 1 cut(s) 763
BseXI GCAGC 4 cut(s) 236, 325, 853, 1010
BsgI GTGCAG 1 cut(s) 305
BsiHKAI GWGCWC 1 cut(s) 763
BsiSI CCGG 1 cut(s) 342
BsiWI CGTACG 1 cut(s) 898
BsmAI GTCTC 1 cut(s) 1050
BsmBI CGTCTC 1 cut(s) 1050
Bsp1286I GDGCHC 1 cut(s) 763
Bsp143I GATC 4 cut(s) 579, 807, 929, 1044
Bsp19I CCATGG 1 cut(s) 936
BspACI CCGC 4 cut(s) 291, 303, 316, 1042
BspCNI CTCAG 2 cut(s) 260, 266
BspMAI CTGCAG 1 cut(s) 871
BspPI GGATC 3 cut(s) 574, 937, 1052
BsrDI GCAATG 3 cut(s) 153, 231, 957
BsrFI RCCGGY 1 cut(s) 341
BsrI ACTGG 1 cut(s) 90
BssAI RCCGGY 1 cut(s) 341
BssECI CCNNGG 4 cut(s) 114, 357, 453, 936
BssMI GATC 4 cut(s) 579, 807, 929, 1044
BssT1I CCWWGG 4 cut(s) 114, 357, 453, 936
Bst4CI ACNGT 3 cut(s) 601, 699, 1000
Bst6I CTCTTC 2 cut(s) 658, 677
BstAPI GCANNNNNTGC 1 cut(s) 233
BstC8I GCNNGC 5 cut(s) 160, 303, 320, 343, 1028
BstDEI CTNAG 2 cut(s) 247, 253
BstDSI CCRYGG 1 cut(s) 936
BstKTI GATC 4 cut(s) 582, 810, 932, 1047
BstMAI GTCTC 1 cut(s) 1050
BstMBI GATC 4 cut(s) 579, 807, 929, 1044
BstMWI GCNNNNNNNGC 3 cut(s) 233, 324, 875
BstSFI CTRYAG 1 cut(s) 867
BstSLI GKGCMC 1 cut(s) 763
BstV1I GCAGC 4 cut(s) 236, 325, 853, 1010
BstX2I RGATCY 1 cut(s) 929
BstXI CCANNNNNNTGG 1 cut(s) 943
BstYI RGATCY 1 cut(s) 929
BtgI CCRYGG 1 cut(s) 936
BtgZI GCGATG 1 cut(s) 604
BtsIMutI CAGTG 1 cut(s) 606
Cac8I GCNNGC 5 cut(s) 160, 303, 320, 343, 1028
Cfr10I RCCGGY 1 cut(s) 341
CseI GACGC 1 cut(s) 344
Csp6I GTAC 4 cut(s) 695, 700, 899, 970
CviAII CATG 4 cut(s) 560, 937, 1105, 1119
CviQI GTAC 4 cut(s) 695, 700, 899, 970
DdeI CTNAG 2 cut(s) 247, 253
DpnI GATC 4 cut(s) 581, 809, 931, 1046
DpnII GATC 4 cut(s) 579, 807, 929, 1044
Eam1104I CTCTTC 2 cut(s) 658, 677
EarI CTCTTC 2 cut(s) 658, 677
EciI GGCGGA 2 cut(s) 280, 1057
Eco130I CCWWGG 4 cut(s) 114, 357, 453, 936
EcoRI GAATTC 1 cut(s) 362
EcoT14I CCWWGG 4 cut(s) 114, 357, 453, 936
ErhI CCWWGG 4 cut(s) 114, 357, 453, 936
Esp3I CGTCTC 1 cut(s) 1050
FaeI CATG 4 cut(s) 563, 940, 1108, 1122
FalI AAGNNNNNCTT 2 cut(s) 261, 293
FatI CATG 4 cut(s) 559, 936, 1104, 1118
FauI CCCGC 1 cut(s) 310
FbaI TGATCA 1 cut(s) 807
FblI GTMKAC 3 cut(s) 309, 537, 564
Fnu4HI GCNGC 4 cut(s) 225, 339, 867, 1024
Fsp4HI GCNGC 4 cut(s) 225, 339, 867, 1024
FspBI CTAG 1 cut(s) 863
GluI GCNGC 4 cut(s) 225, 339, 867, 1024
HapII CCGG 1 cut(s) 342
HgaI GACGC 1 cut(s) 344
Hin1II CATG 4 cut(s) 563, 940, 1108, 1122
HincII GTYRAC 1 cut(s) 61
HindII GTYRAC 1 cut(s) 61
HinfI GANTC 4 cut(s) 79, 642, 723, 894
HpaII CCGG 1 cut(s) 342
HphI GGTGA 4 cut(s) 205, 361, 394, 427
Hpy166II GTNNAC 6 cut(s) 61, 184, 310, 538, 565, 761
Hpy188I TCNGA 4 cut(s) 173, 660, 812, 929
Hpy188III TCNNGA 1 cut(s) 989
Hpy8I GTNNAC 6 cut(s) 61, 184, 310, 538, 565, 761
Hpy99I CGWCG 1 cut(s) 1064
HpyAV CCTTC 8 cut(s) 25, 121, 203, 253, 448, 632, 634, 1078
HpyCH4III ACNGT 3 cut(s) 601, 699, 1000
HpyF10VI GCNNNNNNNGC 3 cut(s) 233, 324, 875
HpyF3I CTNAG 2 cut(s) 247, 253
Hsp92II CATG 4 cut(s) 563, 940, 1108, 1122
KroI GCCGGC 1 cut(s) 341
KroNI GCCGGC 1 cut(s) 343
Ksp22I TGATCA 1 cut(s) 807
Kzo9I GATC 4 cut(s) 579, 807, 929, 1044
LmnI GCTCC 1 cut(s) 293
LpnPI CCDG 9 cut(s) 103, 144, 148, 332, 355, 672, 741, 861, 903
Lsp1109I GCAGC 4 cut(s) 236, 325, 853, 1010
MaeI CTAG 1 cut(s) 863
MaeIII GTNAC 2 cut(s) 504, 776
MalI GATC 4 cut(s) 581, 809, 931, 1046
MboI GATC 4 cut(s) 579, 807, 929, 1044
MboII GAAGA 8 cut(s) 269, 358, 406, 645, 664, 828, 924, 1076
MfeI CAATTG 1 cut(s) 219
MflI RGATCY 1 cut(s) 929
MhlI GDGCHC 1 cut(s) 763
MluCI AATT 6 cut(s) 40, 102, 219, 362, 528, 975
MlyI GAGTC 2 cut(s) 717, 903
MroNI GCCGGC 1 cut(s) 341
MroXI GAANNNNTTC 1 cut(s) 820
MseI TTAA 1 cut(s) 857
MslI CAYNNNNRTG 3 cut(s) 558, 941, 1109
MspI CCGG 1 cut(s) 342
MunI CAATTG 1 cut(s) 219
MwoI GCNNNNNNNGC 3 cut(s) 233, 324, 875
NaeI GCCGGC 1 cut(s) 343
NcoI CCATGG 1 cut(s) 936
NdeII GATC 4 cut(s) 579, 807, 929, 1044
NgoMIV GCCGGC 1 cut(s) 341
NlaIII CATG 4 cut(s) 563, 940, 1108, 1122
NmeAIII GCCGAG 2 cut(s) 1018, 1056
NmuCI GTSAC 1 cut(s) 504
PdiI GCCGGC 1 cut(s) 343
PdmI GAANNNNTTC 1 cut(s) 820
PfeI GAWTC 2 cut(s) 79, 642
Pfl23II CGTACG 1 cut(s) 898
PkrI GCNGC 4 cut(s) 226, 340, 868, 1025
PleI GAGTC 2 cut(s) 717, 902
PpsI GAGTC 2 cut(s) 717, 902
PspLI CGTACG 1 cut(s) 898
PstI CTGCAG 1 cut(s) 871
PsuI RGATCY 1 cut(s) 929
RsaI GTAC 4 cut(s) 696, 701, 900, 971
RsaNI GTAC 4 cut(s) 695, 700, 899, 970
RseI CAYNNNNRTG 3 cut(s) 558, 941, 1109
SaqAI TTAA 1 cut(s) 857
SatI GCNGC 4 cut(s) 225, 339, 867, 1024
Sau3AI GATC 4 cut(s) 579, 807, 929, 1044
ScaI AGTACT 1 cut(s) 696
SchI GAGTC 2 cut(s) 717, 903
SduI GDGCHC 1 cut(s) 763
SfcI CTRYAG 1 cut(s) 867
SmiMI CAYNNNNRTG 3 cut(s) 558, 941, 1109
SmlI CTYRAG 1 cut(s) 791
SmoI CTYRAG 1 cut(s) 791
Sse9I AATT 6 cut(s) 40, 102, 219, 362, 528, 975
SsiI CCGC 4 cut(s) 291, 303, 316, 1042
SspMI CTAG 1 cut(s) 863
StyI CCWWGG 4 cut(s) 114, 357, 453, 936
TaaI ACNGT 3 cut(s) 601, 699, 1000
TaqI TCGA 2 cut(s) 636, 1047
TasI AATT 6 cut(s) 40, 102, 219, 362, 528, 975
TatI WGTACW 3 cut(s) 694, 699, 969
TfiI GAWTC 2 cut(s) 79, 642
Tru1I TTAA 1 cut(s) 857
Tru9I TTAA 1 cut(s) 857
TscAI CASTG 1 cut(s) 606
TseFI GTSAC 1 cut(s) 504
TseI GCWGC 4 cut(s) 224, 338, 866, 1023
Tsp45I GTSAC 1 cut(s) 504
TspDTI ATGAA 5 cut(s) 17, 85, 607, 946, 1121
TspGWI ACGGA 1 cut(s) 270
TspRI CASTG 1 cut(s) 606
VneI GTGCAC 1 cut(s) 759
XapI RAATTY 2 cut(s) 40, 362
XmiI GTMKAC 3 cut(s) 309, 537, 564
XmnI GAANNNNTTC 1 cut(s) 820
XspI CTAG 1 cut(s) 863
ZrmI AGTACT 1 cut(s) 696
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.