Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0014740

Physical Location & Seq

Genomic Coordinates Forward (+)

19431489 .. 19432659

Gene Structure 1171 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g17530.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGAAACTGCTTGACACCGAAAACCGGAGTTACATTGAGTTCCCTCAGTTTCGGACTCTCTTCAATGTGATGAGCTTATCAAAAAGCTCATTTTCAACTAATCACTTTTCAATCAGACTTAGTCGTCTACATCGCAGTTTTGATCCAATTGAAGAGCCAAGGTCTAAAACTGAAATTTTATTTCGATCATACTGGCGGCGTGCATGGATAGTTTTGCTTTGGTTGATCATTTGCAGTGCGCTTTTCGCTTGGAAATTCACCCAGTATCGCCATAGAGCAGCTTTTCAAGTAATGGGTTACTGCGTATCCACTGCTAAAGGTGCTGCAGAAACCCTGAAGTTCAACATGGCTCTGATTCTCCTTCCTGTTTGCCGTAATACAATCACGTGGCTTCGCAAGAACCGGTCTATAAACTCCATCATTCCGTTTAACGACAACATAAACTTCCACAAAATGATTGCAGGAGGGATAGTAGTAGGAGTAATCCTACATGGAGGTTCTCACCTTGCTTGTGATTTTCCAAGAATCAGCGACTCGGATCGTATGGTCTTCCGGCAAACAATAGCTGCCCGATTCGGGTACCATCAGCCATCATACTGTGAAATATTGGCTACAAAGGAGGTGGCAACAGGGATTGCAATGGTAGTACTAATGGCCATCGCATTTTCTCTTGCAACAAAATGGCCACGCCGCCAGTCGCCTTCGCTGCCAAAGTCTGTCCGGAATGTCACAGGCTACAACGCCTTCTGGTACTCACACCACCTGTTCATTCCTGTGTACGCATTGCTCATTCTCCACTCCATGTTCCTCTTCCTAACCAACAAAGCAACCGAAAAAACGGTAAGCCTTTTAGTTCATGTGGTAAATTCTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0002252 GO:0002376 GO:0002679 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0006970 GO:0007154 GO:0007165 GO:0007231 GO:0008150 GO:0008152 GO:0009058 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009873 GO:0009987 GO:0010033 GO:0010119 GO:0010941 GO:0016020 GO:0016174 GO:0016491 GO:0016651 GO:0016999 GO:0017000 GO:0017144 GO:0023052 GO:0032870 GO:0033036 GO:0033037 GO:0033500 GO:0033554 GO:0033993 GO:0035556 GO:0042221 GO:0042592 GO:0042743 GO:0043067 GO:0043069 GO:0044237 GO:0044249 GO:0044464 GO:0045730 GO:0048519 GO:0048523 GO:0048878 GO:0050664 GO:0050665 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051186 GO:0051188 GO:0051716 GO:0052542 GO:0052545 GO:0055114 GO:0060548 GO:0065007 GO:0065008 GO:0070887 GO:0071214 GO:0071215 GO:0071229 GO:0071310 GO:0071369 GO:0071396 GO:0071470 GO:0071495 GO:0071944 GO:0072593 GO:0097305 GO:0097306 GO:0104004 GO:1901700 GO:1901701 GO:1903409

KEGG Pathways

Metabolic & Signaling

ko04016 ko04626 map04016 map04626

Pfam Domains

Protein Families

FAD_binding_8 Ferric_reduct NADPH_Ox NAD_binding_6

Protein Analysis

292

Amino Acids

33.47

Weight (kDa)

10.16

Isoelectric Point (pI)

49.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014740)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g13850 FvH4_5g13850 FvH4_5g13850
malus_domestica	MD14G1211700.v1.1
prunus_persica	Prupe.5G204900_v2.0.a1 Prupe.5G204900_v2.0.a1
pyrus_communis	pycom14g17530
rosa_chinensis	RchiOBHm_Chr7g0183081
rosa_laevigata	RLG00000005080
rosa_multiflora	Rmu_ssc0000111.1_g000005
rosa_roxburghii	Rroxscaffold_3G00270780
rosa_rugosa	Rorug06G0452600
rosa_samantha	Rh7AG055900 Rh7BG055200 Rh7CG056700 Rh7DG055400
rosa_wichuraiana	Rw7G004550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	123
Acc65I	GGTACC	1 cut(s)	579
AccB1I	GGYRCC	1 cut(s)	579
AccI	GTMKAC	1 cut(s)	127
AccIII	TCCGGA	1 cut(s)	720
AciI	CCGC	2 cut(s)	196, 691
AclWI	GGATC	2 cut(s)	137, 546
AcoI	YGGCCR	2 cut(s)	654, 683
AcsI	RAATTY	3 cut(s)	174, 254, 865
AcuI	CTGAAG	1 cut(s)	356
AcvI	CACGTG	1 cut(s)	387
AfaI	GTAC	4 cut(s)	581, 648, 752, 779
AfiI	CCNNNNNNNGG	2 cut(s)	24, 576
AgeI	ACCGGT	1 cut(s)	402
AgsI	TTSAA	6 cut(s)	64, 96, 111, 152, 287, 343
AluBI	AGCT	4 cut(s)	75, 87, 281, 566
AluI	AGCT	4 cut(s)	75, 87, 281, 566
AlwI	GGATC	2 cut(s)	137, 546
Aor13HI	TCCGGA	1 cut(s)	720
AoxI	GGCC	2 cut(s)	654, 683
ApeKI	GCWGC	4 cut(s)	278, 323, 566, 706
ApoI	RAATTY	3 cut(s)	174, 254, 865
AsiGI	ACCGGT	1 cut(s)	402
Asp718I	GGTACC	1 cut(s)	579
AspLEI	GCGC	1 cut(s)	241
AsuHPI	GGTGA	2 cut(s)	250, 494
BalI	TGGCCA	2 cut(s)	656, 685
BanI	GGYRCC	1 cut(s)	579
BbrPI	CACGTG	1 cut(s)	387
BbsI	GAAGAC	1 cut(s)	541
BbvI	GCAGC	4 cut(s)	290, 310, 553, 693
BccI	CCATC	4 cut(s)	425, 591, 598, 665
BceAI	ACGGC	1 cut(s)	357
BciVI	GTATCC	1 cut(s)	316
BclI	TGATCA	1 cut(s)	225
BfmI	CTRYAG	1 cut(s)	324
BfuI	GTATCC	1 cut(s)	316
BisI	GCNGC	6 cut(s)	197, 279, 324, 567, 691, 707
BlsI	GCNGC	6 cut(s)	198, 280, 325, 568, 692, 708
BmcAI	AGTACT	1 cut(s)	648
BmiI	GGNNCC	1 cut(s)	581
BmrI	ACTGGG	1 cut(s)	256
BmuI	ACTGGG	1 cut(s)	256
BpiI	GAAGAC	1 cut(s)	541
BsaAI	YACGTR	1 cut(s)	387
BsaJI	CCNNGG	1 cut(s)	158
BsaWI	WCCGGW	3 cut(s)	24, 402, 720
BsaXI	ACNNNNNCTCC	2 cut(s)	456, 486
Bsc4I	CCNNNNNNNGG	2 cut(s)	24, 576
Bse118I	RCCGGY	1 cut(s)	402
Bse1I	ACTGG	3 cut(s)	197, 262, 694
Bse3DI	GCAATG	2 cut(s)	645, 782
BseAI	TCCGGA	1 cut(s)	720
BseDI	CCNNGG	1 cut(s)	158
BseLI	CCNNNNNNNGG	2 cut(s)	24, 576
BseMI	GCAATG	2 cut(s)	645, 782
BseMII	CTCAG	1 cut(s)	59
BseNI	ACTGG	3 cut(s)	197, 262, 694
BseXI	GCAGC	4 cut(s)	290, 310, 553, 693
BshFI	GGCC	2 cut(s)	656, 685
BshNI	GGYRCC	1 cut(s)	579
BshTI	ACCGGT	1 cut(s)	402
BsiSI	CCGG	4 cut(s)	25, 403, 553, 721
BslI	CCNNNNNNNGG	2 cut(s)	24, 576
BsnI	GGCC	2 cut(s)	656, 685
Bsp13I	TCCGGA	1 cut(s)	720
Bsp143I	GATC	4 cut(s)	142, 185, 225, 538
BspACI	CCGC	2 cut(s)	196, 691
BspANI	GGCC	2 cut(s)	656, 685
BspCNI	CTCAG	1 cut(s)	58
BspEI	TCCGGA	1 cut(s)	720
BspLI	GGNNCC	1 cut(s)	581
BspMAI	CTGCAG	1 cut(s)	328
BspPI	GGATC	2 cut(s)	137, 546
BspQI	GCTCTTC	1 cut(s)	147
BspT107I	GGYRCC	1 cut(s)	579
BsrDI	GCAATG	2 cut(s)	645, 782
BsrFI	RCCGGY	1 cut(s)	402
BsrI	ACTGG	3 cut(s)	197, 262, 694
BssAI	RCCGGY	1 cut(s)	402
BssECI	CCNNGG	1 cut(s)	158
BssMI	GATC	4 cut(s)	142, 185, 225, 538
BssT1I	CCWWGG	1 cut(s)	158
Bst4CI	ACNGT	2 cut(s)	599, 841
Bst6I	CTCTTC	3 cut(s)	65, 147, 815
BstBAI	YACGTR	1 cut(s)	387
BstC8I	GCNNGC	1 cut(s)	201
BstDEI	CTNAG	2 cut(s)	45, 119
BstHHI	GCGC	1 cut(s)	241
BstKTI	GATC	4 cut(s)	145, 188, 228, 541
BstMBI	GATC	4 cut(s)	142, 185, 225, 538
BstMWI	GCNNNNNNNGC	3 cut(s)	245, 320, 706
BstSFI	CTRYAG	1 cut(s)	324
BstV1I	GCAGC	4 cut(s)	290, 310, 553, 693
BstV2I	GAAGAC	1 cut(s)	541
BsuI	GTATCC	1 cut(s)	316
BsuRI	GGCC	2 cut(s)	656, 685
BtgZI	GCGATG	2 cut(s)	116, 643
BtsI	GCAGTG	2 cut(s)	241, 309
BtsIMutI	CAGTG	2 cut(s)	241, 309
Cac8I	GCNNGC	1 cut(s)	201
CfoI	GCGC	1 cut(s)	241
Cfr10I	RCCGGY	1 cut(s)	402
Csp6I	GTAC	4 cut(s)	580, 647, 751, 778
CspAI	ACCGGT	1 cut(s)	402
CspCI	CAANNNNNGTGG	2 cut(s)	603, 638
CviAII	CATG	5 cut(s)	204, 346, 491, 802, 857
CviQI	GTAC	4 cut(s)	580, 647, 751, 778
DdeI	CTNAG	2 cut(s)	45, 119
DpnI	GATC	4 cut(s)	144, 187, 227, 540
DpnII	GATC	4 cut(s)	142, 185, 225, 538
DrdI	GACNNNNNNGTC	1 cut(s)	123
DseDI	GACNNNNNNGTC	1 cut(s)	123
EaeI	YGGCCR	2 cut(s)	654, 683
Eam1104I	CTCTTC	3 cut(s)	65, 147, 815
EarI	CTCTTC	3 cut(s)	65, 147, 815
Eco130I	CCWWGG	1 cut(s)	158
Eco57I	CTGAAG	1 cut(s)	356
Eco72I	CACGTG	1 cut(s)	387
EcoT14I	CCWWGG	1 cut(s)	158
ErhI	CCWWGG	1 cut(s)	158
FaeI	CATG	5 cut(s)	207, 349, 494, 805, 860
FatI	CATG	5 cut(s)	203, 345, 490, 801, 856
FbaI	TGATCA	1 cut(s)	225
FblI	GTMKAC	1 cut(s)	127
Fnu4HI	GCNGC	6 cut(s)	197, 279, 324, 567, 691, 707
Fsp4HI	GCNGC	6 cut(s)	197, 279, 324, 567, 691, 707
GlaI	GCGC	1 cut(s)	240
GluI	GCNGC	6 cut(s)	197, 279, 324, 567, 691, 707
HaeIII	GGCC	2 cut(s)	656, 685
HapII	CCGG	4 cut(s)	25, 403, 553, 721
HhaI	GCGC	1 cut(s)	241
Hin1II	CATG	5 cut(s)	207, 349, 494, 805, 860
Hin6I	GCGC	1 cut(s)	239
HinP1I	GCGC	1 cut(s)	239
HinfI	GANTC	5 cut(s)	55, 355, 525, 533, 573
HpaII	CCGG	4 cut(s)	25, 403, 553, 721
HphI	GGTGA	2 cut(s)	250, 494
Hpy166II	GTNNAC	2 cut(s)	128, 778
Hpy188I	TCNGA	4 cut(s)	54, 116, 354, 538
Hpy188III	TCNNGA	1 cut(s)	721
Hpy8I	GTNNAC	2 cut(s)	128, 778
HpyAV	CCTTC	3 cut(s)	371, 711, 754
HpyCH4III	ACNGT	2 cut(s)	599, 841
HpyCH4IV	ACGT	1 cut(s)	386
HpyCH4V	TGCA	6 cut(s)	203, 234, 326, 461, 638, 674
HpyF10VI	GCNNNNNNNGC	3 cut(s)	245, 320, 706
HpyF3I	CTNAG	2 cut(s)	45, 119
HpySE526I	ACGT	1 cut(s)	386
Hsp92II	CATG	5 cut(s)	207, 349, 494, 805, 860
HspAI	GCGC	1 cut(s)	239
Kpn2I	TCCGGA	1 cut(s)	720
KpnI	GGTACC	1 cut(s)	583
Ksp22I	TGATCA	1 cut(s)	225
Kzo9I	GATC	4 cut(s)	142, 185, 225, 538
LguI	GCTCTTC	1 cut(s)	147
Lsp1109I	GCAGC	4 cut(s)	290, 310, 553, 693
MaeII	ACGT	1 cut(s)	386
MaeIII	GTNAC	3 cut(s)	29, 296, 727
MalI	GATC	4 cut(s)	144, 187, 227, 540
MboI	GATC	4 cut(s)	142, 185, 225, 538
MboII	GAAGA	4 cut(s)	52, 164, 541, 802
MfeI	CAATTG	1 cut(s)	147
MlsI	TGGCCA	2 cut(s)	656, 685
MluCI	AATT	4 cut(s)	147, 174, 254, 865
MluNI	TGGCCA	2 cut(s)	656, 685
MlyI	GAGTC	2 cut(s)	49, 527
MnlI	CCTC	5 cut(s)	54, 458, 488, 613, 818
Mox20I	TGGCCA	2 cut(s)	656, 685
MroI	TCCGGA	1 cut(s)	720
MscI	TGGCCA	2 cut(s)	656, 685
MseI	TTAA	2 cut(s)	429, 874
MslI	CAYNNNNRTG	1 cut(s)	773
Msp20I	TGGCCA	2 cut(s)	656, 685
MspI	CCGG	4 cut(s)	25, 403, 553, 721
MunI	CAATTG	1 cut(s)	147
MwoI	GCNNNNNNNGC	3 cut(s)	245, 320, 706
NdeII	GATC	4 cut(s)	142, 185, 225, 538
NlaIII	CATG	5 cut(s)	207, 349, 494, 805, 860
NlaIV	GGNNCC	1 cut(s)	581
NmuCI	GTSAC	1 cut(s)	727
PciSI	GCTCTTC	1 cut(s)	147
PfeI	GAWTC	3 cut(s)	355, 525, 573
PflFI	GACNNNGTC	1 cut(s)	120
PinAI	ACCGGT	1 cut(s)	402
PkrI	GCNGC	6 cut(s)	198, 280, 325, 568, 692, 708
PleI	GAGTC	2 cut(s)	49, 527
PmaCI	CACGTG	1 cut(s)	387
PmlI	CACGTG	1 cut(s)	387
PpsI	GAGTC	2 cut(s)	49, 527
Ppu21I	YACGTR	1 cut(s)	387
PspCI	CACGTG	1 cut(s)	387
PspN4I	GGNNCC	1 cut(s)	581
PstI	CTGCAG	1 cut(s)	328
PsyI	GACNNNGTC	1 cut(s)	120
RsaI	GTAC	4 cut(s)	581, 648, 752, 779
RsaNI	GTAC	4 cut(s)	580, 647, 751, 778
RseI	CAYNNNNRTG	1 cut(s)	773
SapI	GCTCTTC	1 cut(s)	147
SaqAI	TTAA	2 cut(s)	429, 874
SatI	GCNGC	6 cut(s)	197, 279, 324, 567, 691, 707
Sau3AI	GATC	4 cut(s)	142, 185, 225, 538
ScaI	AGTACT	1 cut(s)	648
SchI	GAGTC	2 cut(s)	49, 527
SfcI	CTRYAG	1 cut(s)	324
SmiMI	CAYNNNNRTG	1 cut(s)	773
Sse9I	AATT	4 cut(s)	147, 174, 254, 865
SsiI	CCGC	2 cut(s)	196, 691
SspI	AATATT	1 cut(s)	606
StyI	CCWWGG	1 cut(s)	158
TaaI	ACNGT	2 cut(s)	599, 841
TaiI	ACGT	1 cut(s)	389
TaqI	TCGA	1 cut(s)	184
TasI	AATT	4 cut(s)	147, 174, 254, 865
TatI	WGTACW	1 cut(s)	646
TauI	GCSGC	2 cut(s)	199, 693
TfiI	GAWTC	3 cut(s)	355, 525, 573
Tru1I	TTAA	2 cut(s)	429, 874
Tru9I	TTAA	2 cut(s)	429, 874
TscAI	CASTG	2 cut(s)	241, 316
TseFI	GTSAC	1 cut(s)	727
TseI	GCWGC	4 cut(s)	278, 323, 566, 706
Tsp45I	GTSAC	1 cut(s)	727
TspDTI	ATGAA	3 cut(s)	17, 757, 845
TspGWI	ACGGA	1 cut(s)	414
TspRI	CASTG	2 cut(s)	241, 316
Tth111I	GACNNNGTC	1 cut(s)	120
XapI	RAATTY	3 cut(s)	174, 254, 865
XmiI	GTMKAC	1 cut(s)	127
ZrmI	AGTACT	1 cut(s)	648

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.