Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0014740

Physical Location & Seq

Genomic Coordinates Reverse (-)

4122936 .. 4127024

Gene Structure 4089 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16332

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2373 bp

ATGGAGCCACAACCATCTTCGCTATCACTGTCATCTTCATCATCTTGCAGTACTAATGATAACACTATGCCGCTTTCTTTCTCTCCGGTTTGGACTGAATCCGATAAAACAGAACCACTGCAAGCTGTGAACCAGGAGAAGGCATCCACTCCCAGGTCAGATACTGAATTGCTGAGATTTATGGACCTCACTGCCAATGGTGGGATGAGGTGGGAGGATGTAGAGGACCGGTTTGACCGGCTTGCCATCACACATTGCCAAATTGATCCAGTTATAAAATGGTCTGATTTTGGTTTGTGCATAGGGATGAAACAGTCGCAAGAGTTTGCTAATCAGCTATTAAGGGCTCTAAGGAAAAGCAAGGATTGCAATTTTTGTATGAGGAAAGATGAACTGCACAGTTACTGGTGTCGTATGACTGACCCTTGCTTCAATTCAAGGATGCAGATTTTCTTTGACTTGTGTGACAGAAACATGGAAGGAAGAATGACTGAGATAGATATTAAGCAGACTATTATACTAAGTGCTACTACAAATAAGTTATTTTTGACACCTGAGGAAGCAGAAGACTATGCTGCTTTAGTCATGGAGCTGCTTGACACTGAAAAAAGAGGCTACATTGAGCTTCCCCAATTTGAGACTCTTTTTAAAGTGAGCTTATCAAAGGCCTCCTTCTCAAATAATCACTTGTCAATCAGACATGATCCGTATCACAATTTTGACCGAGTTCAGGAGCCAAATTCCAGGATAGAAATTTTGTTTCGATCTTATTGGCGACGAGCATGGATAGTTTTGTTGTGGTTGACCATATGTAGTGCACTGTTCACTTGGAAATTTCTGCAATATAGGCATAGAGCAGCTTTTCAAGTAATGGGGTACTGCCTATCCTCTGCCAAAGGTGCTGCTGAAACCCTTAAATTCAACATGGCTCTAATTCTCCTCCCTGTATGTCGTAATACAATTACATGGCTCCGAAGGAATCGTTCAGTCAACTCGATCATTCCATTCAATGACACTATCAACTTCCACAAGCTCATCGCAGGAGGGATAGCAGTAGGAGTTATCCTACATGGTGGTTGTCACCTAACCTGTGATTTACCAAGAATTAGTGATTCAGATCATGTAATCTTCAGGCAAACAATAGCTGCCCAATTCGGGTACCATCAACCATCATACTTTGAAATATTGTCCACAAAGGAAGTGGCATCAGGGATTGGTATGGTAATACTAATGGCCATAGCATTCTCACTTGCAACAACATGGCCACGCCGGGGGTCACCTTCACTGCCTAAGTCTGTCCGGAATGTCACAGGATACAATACCTTTTGGTACTCACATCACTTGTTCATACCTGTATATGCATTGCTCATTTTTCACTCTATATTCCTCTTCCTTACAAACAACGTAAATGAGAAAACGACGTGGATGTACATTGCCATTCCAGTTCTGTTATATACTGGAGAACGAGTATTTCGAGCCATGAGATCAGGATTTTATGAGGTGGAAATGTTGAAGGCAAGTATTCATCCTGGAAAAGTTGTGTCCCTCAAATTGCACAAACCAAAAGGTTTCAAGTACCTGAGTGGCATGTACATATTCATTCAATGCCCTCAGATTTCACCATTTGAATGGCACCCGTTTTCGTTAACATCAGGACCAGAAGATGACTACCTAAGTGTGCATATTAGAACTTCTGGGGACTGGAGTTACCAAATATACAGTCTTTTCCAAGAGGCAACATTATCTGGACTTAACAGTTACCCCAAAGTACACATTGATGGGCCTTATGGTGCTGCTTCCCAAGACCATATCAAGTATGATATCATTGTTCTAATCGGTCTAGGCATAGGCGCTACACCTTTCATTGGCATCCTCAAAGATATTGTCAATGGTGCTCAAAAGTCATCACATTGTGATCATCATTCTGGTTGCAGAGAATGCAGCTCAAGAAAGTCTCCACTAAAAGCCTATCTTTTTTGGGTCACAAGGGAACAAAGCTCCTTTGAATGGTTTAGAGACATCATGAAGGAAATATCAAACTCAAGCGAAAAGCAGTCTGTTGTAGAGATGCACAATTTCTTAACTTCTGTGTATGAAGAGGGAGATGCGCGCTCAGTTCTAATAAGTGCAATACAAGCATTGCATTATGCCAAAAATGGGATTGACTTTGTTTCCCGGACTCCGGTAAGAACACATTTTGCCCGGCCAAACTGGTCCAGCATCTTCTCAAAATTGGCATGTAAACACAGAAGAGCACGGATTGGGGTTTTCTACTGTGGCGCATCAACCTTAGCAAACGAGTTGGAGGGAATGTGTACCAAATTTTCGACCAAAACTTCCACAAGATTTGTATTTCACAAGGAGAATTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0002252 GO:0002376 GO:0002679 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0006970 GO:0007154 GO:0007165 GO:0007231 GO:0008150 GO:0008152 GO:0009058 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009873 GO:0009987 GO:0010033 GO:0010119 GO:0010941 GO:0016020 GO:0016174 GO:0016491 GO:0016651 GO:0016999 GO:0017000 GO:0017144 GO:0023052 GO:0032870 GO:0033036 GO:0033037 GO:0033500 GO:0033554 GO:0033993 GO:0035556 GO:0042221 GO:0042592 GO:0042743 GO:0043067 GO:0043069 GO:0044237 GO:0044249 GO:0044464 GO:0045730 GO:0048519 GO:0048523 GO:0048878 GO:0050664 GO:0050665 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051186 GO:0051188 GO:0051716 GO:0052542 GO:0052545 GO:0055114 GO:0060548 GO:0065007 GO:0065008 GO:0070887 GO:0071214 GO:0071215 GO:0071229 GO:0071310 GO:0071369 GO:0071396 GO:0071470 GO:0071495 GO:0071944 GO:0072593 GO:0097305 GO:0097306 GO:0104004 GO:1901700 GO:1901701 GO:1903409

KEGG Pathways

Metabolic & Signaling

ko04016 ko04626 map04016 map04626

Pfam Domains

Protein Families

FAD_binding_8 Ferric_reduct NADPH_Ox NAD_binding_6

Protein Analysis

790

Amino Acids

90.48

Weight (kDa)

8.65

Isoelectric Point (pI)

46.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NADPH_Ox	PF08414	57 - 146	9.1e-19	Respiratory burst NADPH oxidase
Ferric_reduct	PF01794	309 - 456	4e-09	Ferric reductase like transmembrane component
FAD_binding_8	PF08022	499 - 600	1.5e-27	FAD-binding domain
NAD_binding_6	PF08030	606 - 772	1.4e-39	Ferric reductase NAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014740)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g13850 FvH4_5g13850 FvH4_5g13850
malus_domestica	MD14G1211700.v1.1
prunus_persica	Prupe.5G204900_v2.0.a1 Prupe.5G204900_v2.0.a1
pyrus_communis	pycom14g17530
rosa_chinensis	RchiOBHm_Chr7g0183081
rosa_laevigata	RLG00000005080
rosa_multiflora	Rmu_ssc0000111.1_g000005
rosa_roxburghii	Rroxscaffold_3G00270780
rosa_rugosa	Rorug06G0452600
rosa_samantha	Rh7AG055900 Rh7BG055200 Rh7CG056700 Rh7DG055400
rosa_wichuraiana	Rw7G004550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	275
Acc65I	GGTACC	1 cut(s)	1158
AccB1I	GGYRCC	2 cut(s)	1158, 1632
AccII	CGCG	1 cut(s)	2110
AccIII	TCCGGA	1 cut(s)	1299
AciI	CCGC	1 cut(s)	71
AclWI	GGATC	2 cut(s)	260, 698
AcoI	YGGCCR	3 cut(s)	1233, 1262, 2204
AcsI	RAATTY	5 cut(s)	739, 753, 833, 917, 2321
AcuI	CTGAAG	1 cut(s)	1114
AdeI	CACNNNGTG	1 cut(s)	1913
AfaI	GTAC	9 cut(s)	52, 878, 1160, 1331, 1430, 1577, 1592, 1770, 2317
AgeI	ACCGGT	1 cut(s)	228
AjiI	CACGTC	1 cut(s)	1422
AjnI	CCWGG	4 cut(s)	132, 152, 743, 1528
Alw21I	GWGCWC	3 cut(s)	820, 1897, 2257
Alw26I	GTCTC	3 cut(s)	632, 1959, 2010
Alw44I	GTGCAC	1 cut(s)	816
AlwI	GGATC	2 cut(s)	260, 698
AlwNI	CAGNNNCTG	2 cut(s)	164, 405
Aor13HI	TCCGGA	1 cut(s)	1299
AoxI	GGCC	5 cut(s)	666, 1233, 1262, 1781, 2204
ApaLI	GTGCAC	1 cut(s)	816
ApeKI	GCWGC	7 cut(s)	575, 592, 857, 902, 1145, 1793, 1941
ApoI	RAATTY	5 cut(s)	739, 753, 833, 917, 2321
ArsI	GACNNNNNNTTYG	4 cut(s)	1705, 1737, 1869, 1901
AsiGI	ACCGGT	1 cut(s)	228
Asp718I	GGTACC	1 cut(s)	1158
AspLEI	GCGC	4 cut(s)	1853, 2110, 2112, 2282
AspS9I	GGNCC	5 cut(s)	184, 226, 1655, 1781, 2214
AsuC2I	CCSGG	3 cut(s)	1271, 2176, 2203
AsuHPI	GGTGA	3 cut(s)	1073, 1269, 1611
AvaII	GGWCC	4 cut(s)	184, 226, 1655, 2214
AxyI	CCTNAGG	1 cut(s)	555
BaeGI	GKGCMC	1 cut(s)	820
BalI	TGGCCA	2 cut(s)	1235, 1264
BanI	GGYRCC	2 cut(s)	1158, 1632
BanII	GRGCYC	1 cut(s)	349
BbsI	GAAGAC	1 cut(s)	573
Bbv12I	GWGCWC	3 cut(s)	820, 1897, 2257
BbvI	GCAGC	7 cut(s)	562, 579, 869, 889, 1132, 1780, 1953
BccI	CCATC	5 cut(s)	22, 254, 1170, 1177, 1772
BciT130I	CCWGG	4 cut(s)	134, 154, 745, 1530
BciVI	GTATCC	1 cut(s)	1307
BclI	TGATCA	1 cut(s)	1915
BcnI	CCSGG	3 cut(s)	1271, 2176, 2203
BcoDI	GTCTC	3 cut(s)	632, 1959, 2010
BfaI	CTAG	1 cut(s)	1841
BfoI	RGCGCY	1 cut(s)	1854
BfuI	GTATCC	1 cut(s)	1307
BisI	GCNGC	8 cut(s)	71, 576, 593, 858, 903, 1146, 1794, 1942
BlsI	GCNGC	8 cut(s)	72, 577, 594, 859, 904, 1147, 1795, 1943
BmcAI	AGTACT	1 cut(s)	52
Bme1390I	CCNGG	7 cut(s)	134, 154, 745, 1271, 1530, 2176, 2203
Bme18I	GGWCC	4 cut(s)	184, 226, 1655, 2214
BmgBI	CACGTC	1 cut(s)	1422
BmgT120I	GGNCC	5 cut(s)	184, 226, 1655, 1781, 2214
BmiI	GGNNCC	5 cut(s)	6, 735, 971, 1160, 1634
BmrFI	CCNGG	7 cut(s)	134, 154, 745, 1271, 1530, 2176, 2203
BmsI	GCATC	8 cut(s)	152, 432, 1214, 1878, 2058, 2095, 2229, 2291
BpiI	GAAGAC	1 cut(s)	573
BpmI	CTGGAG	2 cut(s)	1479, 1723
Bpu10I	CCTNAGC	1 cut(s)	2290
BpuEI	CTTGAG	2 cut(s)	1930, 2026
BpuMI	CCSGG	3 cut(s)	1271, 2176, 2203
BsaBI	GATNNNNATC	2 cut(s)	708, 1116
BsaJI	CCNNGG	2 cut(s)	152, 1270
BsaWI	WCCGGW	4 cut(s)	85, 228, 1299, 2182
BsaXI	ACNNNNNCTCC	4 cut(s)	1452, 1482, 2297, 2327
Bse118I	RCCGGY	2 cut(s)	228, 237
Bse1I	ACTGG	6 cut(s)	269, 410, 1442, 1462, 1706, 2216
Bse21I	CCTNAGG	1 cut(s)	555
Bse3DI	GCAATG	4 cut(s)	253, 1361, 1431, 2138
Bse8I	GATNNNNATC	2 cut(s)	708, 1116
BseAI	TCCGGA	1 cut(s)	1299
BseBI	CCWGG	4 cut(s)	134, 154, 745, 1530
BseDI	CCNNGG	2 cut(s)	152, 1270
BseGI	GGATG	8 cut(s)	143, 210, 223, 312, 447, 1431, 1525, 1869
BseJI	GATNNNNATC	2 cut(s)	708, 1116
BseMI	GCAATG	4 cut(s)	253, 1361, 1431, 2138
BseMII	CTCAG	6 cut(s)	164, 483, 546, 1571, 1625, 2127
BseNI	ACTGG	6 cut(s)	269, 410, 1442, 1462, 1706, 2216
BsePI	GCGCGC	1 cut(s)	2108
BseRI	GAGGAG	1 cut(s)	929
BseSI	GKGCMC	1 cut(s)	820
BseXI	GCAGC	7 cut(s)	562, 579, 869, 889, 1132, 1780, 1953
BsgI	GTGCAG	1 cut(s)	380
Bsh1236I	CGCG	1 cut(s)	2110
BshFI	GGCC	5 cut(s)	668, 1235, 1264, 1783, 2206
BshNI	GGYRCC	2 cut(s)	1158, 1632
BshTI	ACCGGT	1 cut(s)	228
BsiHKAI	GWGCWC	3 cut(s)	820, 1897, 2257
BsiSI	CCGG	8 cut(s)	86, 229, 238, 1270, 1300, 2176, 2183, 2203
BslFI	GGGAC	2 cut(s)	1528, 1712
BsmAI	GTCTC	3 cut(s)	632, 1959, 2010
BsmFI	GGGAC	2 cut(s)	1528, 1712
BsmI	GAATGC	2 cut(s)	1241, 1943
BsnI	GGCC	5 cut(s)	668, 1235, 1264, 1783, 2206
Bsp1286I	GDGCHC	4 cut(s)	349, 820, 1897, 2257
Bsp13I	TCCGGA	1 cut(s)	1299
Bsp1407I	TGTACA	2 cut(s)	1428, 1590
Bsp143I	GATC	7 cut(s)	265, 703, 764, 996, 1117, 1484, 1915
BspACI	CCGC	1 cut(s)	71
BspANI	GGCC	5 cut(s)	668, 1235, 1264, 1783, 2206
BspCNI	CTCAG	6 cut(s)	165, 484, 547, 1572, 1624, 2126
BspEI	TCCGGA	1 cut(s)	1299
BspFNI	CGCG	1 cut(s)	2110
BspHI	TCATGA	1 cut(s)	2022
BspLI	GGNNCC	5 cut(s)	6, 735, 971, 1160, 1634
BspPI	GGATC	2 cut(s)	260, 698
BspQI	GCTCTTC	1 cut(s)	2245
BspT107I	GGYRCC	2 cut(s)	1158, 1632
BsrDI	GCAATG	4 cut(s)	253, 1361, 1431, 2138
BsrFI	RCCGGY	2 cut(s)	228, 237
BsrGI	TGTACA	2 cut(s)	1428, 1590
BsrI	ACTGG	6 cut(s)	269, 410, 1442, 1462, 1706, 2216
BssAI	RCCGGY	2 cut(s)	228, 237
BssECI	CCNNGG	2 cut(s)	152, 1270
BssHII	GCGCGC	1 cut(s)	2108
BssMI	GATC	7 cut(s)	265, 703, 764, 996, 1117, 1484, 1915
Bst2UI	CCWGG	4 cut(s)	134, 154, 745, 1530
Bst4CI	ACNGT	7 cut(s)	30, 315, 401, 822, 1721, 1757, 2276
Bst6I	CTCTTC	3 cut(s)	1394, 2091, 2245
BstAPI	GCANNNNNTGC	2 cut(s)	366, 1938
BstAUI	TGTACA	2 cut(s)	1428, 1590
BstC8I	GCNNGC	3 cut(s)	123, 243, 2110
BstEII	GGTNACC	1 cut(s)	1275
BstF5I	GGATG	8 cut(s)	143, 210, 223, 312, 447, 1431, 1525, 1869
BstFNI	CGCG	1 cut(s)	2110
BstH2I	RGCGCY	1 cut(s)	1854
BstHHI	GCGC	4 cut(s)	1853, 2110, 2112, 2282
BstKTI	GATC	7 cut(s)	268, 706, 767, 999, 1120, 1487, 1918
BstMAI	GTCTC	3 cut(s)	632, 1959, 2010
BstMBI	GATC	7 cut(s)	265, 703, 764, 996, 1117, 1484, 1915
BstMWI	GCNNNNNNNGC	5 cut(s)	366, 847, 899, 1938, 2135
BstNI	CCWGG	4 cut(s)	134, 154, 745, 1530
BstNSI	RCATGY	2 cut(s)	1591, 2241
BstPI	GGTNACC	1 cut(s)	1275
BstSCI	CCNGG	7 cut(s)	132, 152, 743, 1269, 1528, 2174, 2201
BstSLI	GKGCMC	1 cut(s)	820
BstUI	CGCG	1 cut(s)	2110
BstV1I	GCAGC	7 cut(s)	562, 579, 869, 889, 1132, 1780, 1953
BstV2I	GAAGAC	1 cut(s)	573
BstXI	CCANNNNNNTGG	1 cut(s)	1629
Bsu36I	CCTNAGG	1 cut(s)	555
BsuI	GTATCC	1 cut(s)	1307
BsuRI	GGCC	5 cut(s)	668, 1235, 1264, 1783, 2206
BtgZI	GCGATG	1 cut(s)	1021
BtrI	CACGTC	1 cut(s)	1422
BtsCI	GGATG	8 cut(s)	143, 210, 223, 312, 447, 1431, 1525, 1869
BtsI	GCAGTG	3 cut(s)	116, 189, 1283
BtsIMutI	CAGTG	6 cut(s)	26, 116, 189, 600, 818, 1283
Cac8I	GCNNGC	3 cut(s)	123, 243, 2110
CaiI	CAGNNNCTG	2 cut(s)	164, 405
CciI	TCATGA	1 cut(s)	2022
CfoI	GCGC	4 cut(s)	1853, 2110, 2112, 2282
Cfr10I	RCCGGY	2 cut(s)	228, 237
Cfr13I	GGNCC	5 cut(s)	184, 226, 1655, 1781, 2214
Csp6I	GTAC	9 cut(s)	51, 877, 1159, 1330, 1429, 1576, 1591, 1769, 2316
CspAI	ACCGGT	1 cut(s)	228
CspCI	CAANNNNNGTGG	4 cut(s)	1182, 1217, 2329, 2364
CviQI	GTAC	9 cut(s)	51, 877, 1159, 1330, 1429, 1576, 1591, 1769, 2316
DpnI	GATC	7 cut(s)	267, 705, 766, 998, 1119, 1486, 1917
DpnII	GATC	7 cut(s)	265, 703, 764, 996, 1117, 1484, 1915
DraI	TTTAAA	1 cut(s)	649
DraIII	CACNNNGTG	1 cut(s)	1913
EaeI	YGGCCR	3 cut(s)	1233, 1262, 2204
Eam1104I	CTCTTC	3 cut(s)	1394, 2091, 2245
EarI	CTCTTC	3 cut(s)	1394, 2091, 2245
Eco147I	AGGCCT	1 cut(s)	668
Eco24I	GRGCYC	1 cut(s)	349
Eco32I	GATATC	1 cut(s)	1822
Eco47I	GGWCC	4 cut(s)	184, 226, 1655, 2214
Eco57I	CTGAAG	1 cut(s)	1114
Eco81I	CCTNAGG	1 cut(s)	555
Eco91I	GGTNACC	1 cut(s)	1275
EcoO65I	GGTNACC	1 cut(s)	1275
EcoRII	CCWGG	4 cut(s)	132, 152, 743, 1528
EcoRV	GATATC	1 cut(s)	1822
EcoT22I	ATGCAT	1 cut(s)	1363
EcoT38I	GRGCYC	1 cut(s)	349
FalI	AAGNNNNNCTT	4 cut(s)	656, 688, 1956, 1988
FaqI	GGGAC	2 cut(s)	1528, 1712
FauNDI	CATATG	1 cut(s)	809
FbaI	TGATCA	1 cut(s)	1915
Fnu4HI	GCNGC	8 cut(s)	71, 576, 593, 858, 903, 1146, 1794, 1942
FokI	GGATG	8 cut(s)	130, 217, 230, 319, 454, 1438, 1512, 1856
FriOI	GRGCYC	1 cut(s)	349
Fsp4HI	GCNGC	8 cut(s)	71, 576, 593, 858, 903, 1146, 1794, 1942
FspBI	CTAG	1 cut(s)	1841
GlaI	GCGC	4 cut(s)	1852, 2109, 2111, 2281
GluI	GCNGC	8 cut(s)	71, 576, 593, 858, 903, 1146, 1794, 1942
GsuI	CTGGAG	2 cut(s)	1479, 1723
HaeII	RGCGCY	1 cut(s)	1854
HaeIII	GGCC	5 cut(s)	668, 1235, 1264, 1783, 2206
HapII	CCGG	8 cut(s)	86, 229, 238, 1270, 1300, 2176, 2183, 2203
HhaI	GCGC	4 cut(s)	1853, 2110, 2112, 2282
Hin6I	GCGC	4 cut(s)	1851, 2108, 2110, 2280
HinP1I	GCGC	4 cut(s)	1851, 2108, 2110, 2280
HincII	GTYRAC	3 cut(s)	804, 991, 1647
HindII	GTYRAC	3 cut(s)	804, 991, 1647
HinfI	GANTC	5 cut(s)	98, 640, 979, 1112, 2179
HpaI	GTTAAC	1 cut(s)	1647
HpaII	CCGG	8 cut(s)	86, 229, 238, 1270, 1300, 2176, 2183, 2203
HphI	GGTGA	3 cut(s)	1073, 1269, 1611
Hpy188I	TCNGA	7 cut(s)	103, 160, 286, 698, 974, 1117, 1614
Hpy188III	TCNNGA	7 cut(s)	731, 1300, 1488, 1653, 1746, 1947, 2023
Hpy99I	CGWCG	2 cut(s)	780, 1423
HpyAV	CCTTC	7 cut(s)	133, 473, 682, 969, 1290, 1507, 2020
HpyCH4III	ACNGT	7 cut(s)	30, 315, 401, 822, 1721, 1757, 2276
HpyCH4IV	ACGT	2 cut(s)	1404, 1421
HpyF10VI	GCNNNNNNNGC	5 cut(s)	366, 847, 899, 1938, 2135
HpySE526I	ACGT	2 cut(s)	1404, 1421
HspAI	GCGC	4 cut(s)	1851, 2108, 2110, 2280
Kpn2I	TCCGGA	1 cut(s)	1299
KpnI	GGTACC	1 cut(s)	1162
Ksp22I	TGATCA	1 cut(s)	1915
KspAI	GTTAAC	1 cut(s)	1647
Kzo9I	GATC	7 cut(s)	265, 703, 764, 996, 1117, 1484, 1915
LguI	GCTCTTC	1 cut(s)	2245
LmnI	GCTCC	5 cut(s)	4, 589, 733, 975, 2003
Lsp1109I	GCAGC	7 cut(s)	562, 579, 869, 889, 1132, 1780, 1953
LweI	GCATC	8 cut(s)	152, 432, 1214, 1878, 2058, 2095, 2229, 2291
MaeI	CTAG	1 cut(s)	1841
MaeII	ACGT	2 cut(s)	1404, 1421
MaeIII	GTNAC	8 cut(s)	401, 464, 1079, 1275, 1306, 1706, 1757, 1981
MalI	GATC	7 cut(s)	267, 705, 766, 998, 1119, 1486, 1917
MboI	GATC	7 cut(s)	265, 703, 764, 996, 1117, 1484, 1915
MhlI	GDGCHC	4 cut(s)	349, 820, 1897, 2257
MlsI	TGGCCA	2 cut(s)	1235, 1264
MluNI	TGGCCA	2 cut(s)	1235, 1264
MlyI	GAGTC	2 cut(s)	634, 2173
MmeI	TCCRAC	1 cut(s)	2283
Mox20I	TGGCCA	2 cut(s)	1235, 1264
Mph1103I	ATGCAT	1 cut(s)	1363
MroI	TCCGGA	1 cut(s)	1299
MscI	TGGCCA	2 cut(s)	1235, 1264
MseI	TTAA	8 cut(s)	341, 504, 648, 915, 1646, 1752, 2081, 2371
MslI	CAYNNNNRTG	3 cut(s)	305, 1627, 1776
Msp20I	TGGCCA	2 cut(s)	1235, 1264
MspI	CCGG	8 cut(s)	86, 229, 238, 1270, 1300, 2176, 2183, 2203
MspR9I	CCNGG	7 cut(s)	134, 154, 745, 1271, 1530, 2176, 2203
Mva1269I	GAATGC	2 cut(s)	1241, 1943
MvaI	CCWGG	4 cut(s)	134, 154, 745, 1530
MvnI	CGCG	1 cut(s)	2110
MwoI	GCNNNNNNNGC	5 cut(s)	366, 847, 899, 1938, 2135
NciI	CCSGG	3 cut(s)	1271, 2176, 2203
NdeI	CATATG	1 cut(s)	809
NdeII	GATC	7 cut(s)	265, 703, 764, 996, 1117, 1484, 1915
NlaIV	GGNNCC	5 cut(s)	6, 735, 971, 1160, 1634
NmuCI	GTSAC	5 cut(s)	464, 1079, 1275, 1306, 1981
NsiI	ATGCAT	1 cut(s)	1363
NspI	RCATGY	2 cut(s)	1591, 2241
PagI	TCATGA	1 cut(s)	2022
PauI	GCGCGC	1 cut(s)	2108
PceI	AGGCCT	1 cut(s)	668
PciSI	GCTCTTC	1 cut(s)	2245
PcsI	WCGNNNNNNNCGW	1 cut(s)	1471
PctI	GAATGC	2 cut(s)	1241, 1943
PfeI	GAWTC	3 cut(s)	98, 979, 1112
PfoI	TCCNGGA	3 cut(s)	743, 1528, 2174
PinAI	ACCGGT	1 cut(s)	228
PkrI	GCNGC	8 cut(s)	72, 577, 594, 859, 904, 1147, 1795, 1943
PleI	GAGTC	2 cut(s)	634, 2173
PpsI	GAGTC	2 cut(s)	634, 2173
PsiI	TTATAA	1 cut(s)	275
Psp6I	CCWGG	4 cut(s)	132, 152, 743, 1528
PspEI	GGTNACC	1 cut(s)	1275
PspGI	CCWGG	4 cut(s)	132, 152, 743, 1528
PspN4I	GGNNCC	5 cut(s)	6, 735, 971, 1160, 1634
PspPI	GGNCC	5 cut(s)	184, 226, 1655, 1781, 2214
PstNI	CAGNNNCTG	2 cut(s)	164, 405
PteI	GCGCGC	1 cut(s)	2108
RsaI	GTAC	9 cut(s)	52, 878, 1160, 1331, 1430, 1577, 1592, 1770, 2317
RsaNI	GTAC	9 cut(s)	51, 877, 1159, 1330, 1429, 1576, 1591, 1769, 2316
RseI	CAYNNNNRTG	3 cut(s)	305, 1627, 1776
SapI	GCTCTTC	1 cut(s)	2245
SaqAI	TTAA	8 cut(s)	341, 504, 648, 915, 1646, 1752, 2081, 2371
SatI	GCNGC	8 cut(s)	71, 576, 593, 858, 903, 1146, 1794, 1942
Sau3AI	GATC	7 cut(s)	265, 703, 764, 996, 1117, 1484, 1915
Sau96I	GGNCC	5 cut(s)	184, 226, 1655, 1781, 2214
ScaI	AGTACT	1 cut(s)	52
SchI	GAGTC	2 cut(s)	634, 2173
ScrFI	CCNGG	7 cut(s)	134, 154, 745, 1271, 1530, 2176, 2203
SduI	GDGCHC	4 cut(s)	349, 820, 1897, 2257
SfaNI	GCATC	8 cut(s)	152, 432, 1214, 1878, 2058, 2095, 2229, 2291
SinI	GGWCC	4 cut(s)	184, 226, 1655, 2214
SmiMI	CAYNNNNRTG	3 cut(s)	305, 1627, 1776
SmlI	CTYRAG	2 cut(s)	1945, 2041
SmoI	CTYRAG	2 cut(s)	1945, 2041
SseBI	AGGCCT	1 cut(s)	668
SsiI	CCGC	1 cut(s)	71
SspI	AATATT	1 cut(s)	1185
SspMI	CTAG	1 cut(s)	1841
StuI	AGGCCT	1 cut(s)	668
StyD4I	CCNGG	7 cut(s)	132, 152, 743, 1269, 1528, 2174, 2201
TaaI	ACNGT	7 cut(s)	30, 315, 401, 822, 1721, 1757, 2276
TaiI	ACGT	2 cut(s)	1407, 1424
TaqI	TCGA	4 cut(s)	763, 995, 1474, 2327
TaqII	GACCGA	2 cut(s)	738, 1826
TatI	WGTACW	4 cut(s)	50, 1428, 1590, 1768
TauI	GCSGC	1 cut(s)	73
TfiI	GAWTC	3 cut(s)	98, 979, 1112
Tru1I	TTAA	8 cut(s)	341, 504, 648, 915, 1646, 1752, 2081, 2371
Tru9I	TTAA	8 cut(s)	341, 504, 648, 915, 1646, 1752, 2081, 2371
TscAI	CASTG	6 cut(s)	33, 123, 196, 607, 825, 1290
TseFI	GTSAC	5 cut(s)	464, 1079, 1275, 1306, 1981
TseI	GCWGC	7 cut(s)	575, 592, 857, 902, 1145, 1793, 1941
Tsp45I	GTSAC	5 cut(s)	464, 1079, 1275, 1306, 1981
TspDTI	ATGAA	9 cut(s)	27, 323, 405, 1336, 1514, 1588, 1852, 2039, 2109
TspGWI	ACGGA	2 cut(s)	696, 2272
TspRI	CASTG	6 cut(s)	33, 123, 196, 607, 825, 1290
VneI	GTGCAC	1 cut(s)	816
VpaK11BI	GGWCC	4 cut(s)	184, 226, 1655, 2214
XapI	RAATTY	5 cut(s)	739, 753, 833, 917, 2321
XceI	RCATGY	2 cut(s)	1591, 2241
XcmI	CCANNNNNNNNNTGG	2 cut(s)	276, 1198
XspI	CTAG	1 cut(s)	1841
ZrmI	AGTACT	1 cut(s)	52
Zsp2I	ATGCAT	1 cut(s)	1363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.