pycom14g18100

H ACA ribonucleoprotein complex subunit 2-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
Physical Location & Seq
Reverse (-)
19857129 .. 19857665
537 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 219 bp
ATGGGAAGCGATAGCGAAGTAGAGAAGTCGGCGCAGAAGGAGAGGGAGAAGAAGAAGATGCAGGCTCTTGCTCCGATCGCCAAACCCCTCGCCGGAAAGAAGCTCTGCAAACGAACCCTCAAGCTCGTCCGTAAAGCTGCTGAGCACAAATGCTTGAAGAGGGGAGTGAAGGAAGTGGTGAAAAGCATCCGGCGTGGTCAAAAGGGTAGATTCATATAG

Protein Analysis

73

Amino Acids

8.13

Weight (kDa)

10.6

Isoelectric Point (pI)

32.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 92
AgsI TTSAA 1 cut(s) 157
AluBI AGCT 3 cut(s) 103, 124, 137
AluI AGCT 3 cut(s) 103, 124, 137
Alw21I GWGCWC 1 cut(s) 147
ApeKI GCWGC 1 cut(s) 137
AspLEI GCGC 1 cut(s) 34
AsuHPI GGTGA 1 cut(s) 190
Bbv12I GWGCWC 1 cut(s) 147
BbvI GCAGC 1 cut(s) 124
BisI GCNGC 1 cut(s) 138
BlpI GCTNAGC 1 cut(s) 141
BlsI GCNGC 1 cut(s) 139
BmsI GCATC 2 cut(s) 48, 195
Bpu1102I GCTNAGC 1 cut(s) 141
BpuEI CTTGAG 1 cut(s) 104
Bsc4I CCNNNNNNNGG 1 cut(s) 92
BseGI GGATG 1 cut(s) 186
BseLI CCNNNNNNNGG 1 cut(s) 92
BseMII CTCAG 1 cut(s) 132
BseXI GCAGC 1 cut(s) 124
Bsh1285I CGRYCG 1 cut(s) 78
BsiEI CGRYCG 1 cut(s) 78
BsiHKAI GWGCWC 1 cut(s) 147
BsiSI CCGG 2 cut(s) 93, 190
BslI CCNNNNNNNGG 1 cut(s) 92
Bsp1286I GDGCHC 1 cut(s) 147
Bsp143I GATC 1 cut(s) 75
Bsp1720I GCTNAGC 1 cut(s) 141
BspCNI CTCAG 1 cut(s) 133
BssMI GATC 1 cut(s) 75
Bst6I CTCTTC 1 cut(s) 152
BstC8I GCNNGC 1 cut(s) 63
BstDEI CTNAG 1 cut(s) 141
BstF5I GGATG 1 cut(s) 186
BstHHI GCGC 1 cut(s) 34
BstKTI GATC 1 cut(s) 78
BstMBI GATC 1 cut(s) 75
BstMCI CGRYCG 1 cut(s) 78
BstMWI GCNNNNNNNGC 1 cut(s) 77
BstV1I GCAGC 1 cut(s) 124
BtsCI GGATG 1 cut(s) 186
Cac8I GCNNGC 1 cut(s) 63
CfoI GCGC 1 cut(s) 34
CviJI RGCY 4 cut(s) 65, 103, 124, 137
CviKI_1 RGCY 4 cut(s) 65, 103, 124, 137
DdeI CTNAG 1 cut(s) 141
DpnI GATC 1 cut(s) 77
DpnII GATC 1 cut(s) 75
Eam1104I CTCTTC 1 cut(s) 152
EarI CTCTTC 1 cut(s) 152
FaiI YATR 2 cut(s) 215, 217
Fnu4HI GCNGC 1 cut(s) 138
FokI GGATG 1 cut(s) 173
Fsp4HI GCNGC 1 cut(s) 138
GlaI GCGC 1 cut(s) 33
GluI GCNGC 1 cut(s) 138
HapII CCGG 2 cut(s) 93, 190
HhaI GCGC 1 cut(s) 34
Hin6I GCGC 1 cut(s) 32
HinP1I GCGC 1 cut(s) 32
HinfI GANTC 1 cut(s) 210
HpaII CCGG 2 cut(s) 93, 190
HphI GGTGA 1 cut(s) 190
Hpy188I TCNGA 1 cut(s) 75
HpyAV CCTTC 2 cut(s) 31, 163
HpyCH4V TGCA 2 cut(s) 61, 108
HpyF10VI GCNNNNNNNGC 1 cut(s) 77
HpyF3I CTNAG 1 cut(s) 141
HspAI GCGC 1 cut(s) 32
Kzo9I GATC 1 cut(s) 75
LmnI GCTCC 1 cut(s) 76
LpnPI CCDG 3 cut(s) 47, 106, 203
Lsp1109I GCAGC 1 cut(s) 124
LweI GCATC 2 cut(s) 48, 195
MalI GATC 1 cut(s) 77
MboI GATC 1 cut(s) 75
MboII GAAGA 4 cut(s) 61, 64, 67, 169
MhlI GDGCHC 1 cut(s) 147
MnlI CCTC 4 cut(s) 36, 98, 128, 153
MspI CCGG 2 cut(s) 93, 190
MwoI GCNNNNNNNGC 1 cut(s) 77
NdeII GATC 1 cut(s) 75
PfeI GAWTC 1 cut(s) 210
PkrI GCNGC 1 cut(s) 139
Ple19I CGATCG 1 cut(s) 78
PvuI CGATCG 1 cut(s) 78
SatI GCNGC 1 cut(s) 138
Sau3AI GATC 1 cut(s) 75
SduI GDGCHC 1 cut(s) 147
SetI ASST 3 cut(s) 105, 126, 139
SfaNI GCATC 2 cut(s) 48, 195
SgeI CNNG 9 cut(s) 74, 80, 101, 105, 133, 137, 166, 202, 206
SmlI CTYRAG 1 cut(s) 119
SmoI CTYRAG 1 cut(s) 119
TfiI GAWTC 1 cut(s) 210
TseI GCWGC 1 cut(s) 137
TspDTI ATGAA 1 cut(s) 202
TspGWI ACGGA 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.