Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0014325

Physical Location & Seq

Genomic Coordinates Forward (+)

1231457 .. 1233977

Gene Structure 2521 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGGCGGCGGCGATTTCTTCTCACTTCGCGTTCCTATCAGACAAACCCTCTCTCTCCTCTTCACTTTCCTCTTTCTCCGGCCAGAGTCTCCACCGATCGCCTCGATGCTCCGCCGCCGTGGTCAGCAGCATTTCCCTGCCGTCTCCGGCGAGACTCCGACGAATCTCGTGCCAGACCTCCTCCGTTACTTCTTCGCCTTCGTCCATCGCCAACGTAACAGCAAAAGCAGAACTGAAGGATTTCTTGCACATAAGTGATTTTGACAAAGCCACCATTCTGAAGATGTTAGATCGAGCTGCAGAGGTCAAGGCACTTCTCAAATCAGGGGACAGGTCATTTCAACCATTTAAGGGGAAGACAATGGCTATGATCTTTGCAAAGCCTTCCATGAGAACACGTGTTTCATTTGAGACTGGGTTTTTCTTGCTAGGTGGTCATGCCATATACTTGGGTCCTAATGACATCCAAATGGGTAAGCGGGAGGAAACTCGGGATGTCGCACGTGTTCTGTCTCGCTATAATGACATTATTATGGCGCGTGTCTTTGCTCATCAGGATATCCTTGATTTGGCTAAATATGCAACCGTACCTGTTGTCAATGGCTTGACAGACTACAACCATCCCTGTCAAATTATGGCTGATGTCCTCACTATCATCGAACACATTGGTCGGATAGAAGGAACTAAGGTTGTCTATGTTGGAGATGGAAACAACATTGTCCACTCTTGGTTGCTGATGGCTGCTGTTATTCCTTTCCACTTCGTTTGTGCCTGTCCAAAAGGTTTTGAACCAGATAAGAAAACAGTTGAGAAGGCACAGCAGGCTGGTATCAGCAAGATTGAGATTACAAATGATCCAAAGGAAGCAGTCAAGGGAGCAGATGTTGTGTACTCAGATGTGTGGGCTAGCATGGGGCAAAAGGAGGAGGCTGATTCTCGCCGTAAAATTTTCCGAGGATTTCAGGTTGATGAAAATCTCATGAAGATAGCAGGCCCCAAAGCCTATTTCATGCATTGTTTGCCAGCGGAAAGAGGGGTGGAAGTGACTGACGGGGTGGTTGAGGCTCCAAATTCTATCGTCTTTCCACAAGCTGAGAATCGGATGCATGCACAGAATGCTGTCATGCTTCATCTGCTCGGAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000050 GO:0003674 GO:0003824 GO:0004585 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006525 GO:0006526 GO:0006591 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016741 GO:0016743 GO:0019627 GO:0019752 GO:0034641 GO:0042450 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:0071941 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00220 ko01100 ko01110 ko01130 ko01230 map00220 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

OTCace OTCace_N

Protein Analysis

382

Amino Acids

41.76

Weight (kDa)

8.78

Isoelectric Point (pI)

43.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OTCace_N	PF02729	79 - 220	1.9e-47	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
OTCace	PF00185	226 - 377	8.1e-60	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75330
fragaria_vesca	FvH4_2g39540
malus_domestica	MD08G1028500.v1.1 MD15G1024200.v1.1
prunus_persica	Prupe.1G376500_v2.0.a1
pyrus_communis	pycom08g02260 pycom15g02080
rosa_chinensis	RchiOBHm_Chr6g0301371
rosa_laevigata	RLG00000011256
rosa_multiflora	Rmu_sc0013354.1_g000027
rosa_roxburghii	Rroxscaffold_7G00166870
rosa_rugosa	Rorug06G0304300
rosa_samantha	Rh6AG417700 Rh6BG424400 Rh6CG431500 Rh6DG417400
rosa_wichuraiana	Rw6G036150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	29, 538
AciI	CCGC	6 cut(s)	5, 8, 111, 114, 478, 1025
AclWI	GGATC	1 cut(s)	848
AcoI	YGGCCR	1 cut(s)	79
AcsI	RAATTY	2 cut(s)	945, 1069
AcuI	CTGAAG	2 cut(s)	254, 299
AcvI	CACGTG	2 cut(s)	398, 503
AfaI	GTAC	2 cut(s)	588, 890
AfiI	CCNNNNNNNGG	2 cut(s)	350, 568
AflIII	ACRYGT	3 cut(s)	395, 397, 502
AgsI	TTSAA	2 cut(s)	341, 788
AjuI	GAANNNNNNNTTGG	2 cut(s)	989, 1021
AleI	CACNNNNGTG	1 cut(s)	252
AluBI	AGCT	2 cut(s)	296, 1091
AluI	AGCT	2 cut(s)	296, 1091
Alw26I	GTCTC	5 cut(s)	92, 145, 147, 404, 516
AlwI	GGATC	1 cut(s)	848
Ama87I	CYCGRG	1 cut(s)	489
AoxI	GGCC	2 cut(s)	79, 991
ApeKI	GCWGC	3 cut(s)	126, 296, 740
ApoI	RAATTY	2 cut(s)	945, 1069
Asp700I	GAANNNNTTC	1 cut(s)	239
AspLEI	GCGC	1 cut(s)	538
AspS9I	GGNCC	2 cut(s)	452, 992
AsuNHI	GCTAGC	1 cut(s)	905
AvaI	CYCGRG	1 cut(s)	489
AvaII	GGWCC	1 cut(s)	452
BauI	CACGAG	1 cut(s)	166
BbrPI	CACGTG	2 cut(s)	398, 503
BbsI	GAAGAC	1 cut(s)	362
BbvI	GCAGC	3 cut(s)	138, 283, 727
BccI	CCATC	4 cut(s)	212, 627, 698, 730
BceAI	ACGGC	3 cut(s)	101, 124, 924
BcgI	CGANNNNNNTGC	2 cut(s)	150, 184
BcoDI	GTCTC	5 cut(s)	92, 145, 147, 404, 516
BfaI	CTAG	2 cut(s)	428, 906
BfmI	CTRYAG	1 cut(s)	297
BisI	GCNGC	6 cut(s)	6, 9, 114, 127, 297, 741
BlsI	GCNGC	6 cut(s)	7, 10, 115, 128, 298, 742
Bme18I	GGWCC	1 cut(s)	452
BmeT110I	CYCGRG	1 cut(s)	489
BmgT120I	GGNCC	2 cut(s)	452, 992
BmiI	GGNNCC	3 cut(s)	453, 994, 1065
BmrI	ACTGGG	1 cut(s)	423
BmsI	GCATC	2 cut(s)	95, 1092
BmtI	GCTAGC	1 cut(s)	909
BmuI	ACTGGG	1 cut(s)	423
BpiI	GAAGAC	1 cut(s)	362
BsaAI	YACGTR	2 cut(s)	398, 503
BsaBI	GATNNNNATC	1 cut(s)	972
BsaJI	CCNNGG	2 cut(s)	117, 952
BsaXI	ACNNNNNCTCC	2 cut(s)	867, 897
Bsc4I	CCNNNNNNNGG	2 cut(s)	350, 568
Bse1I	ACTGG	1 cut(s)	418
Bse8I	GATNNNNATC	1 cut(s)	972
BseDI	CCNNGG	2 cut(s)	117, 952
BseGI	GGATG	4 cut(s)	462, 499, 619, 1107
BseJI	GATNNNNATC	1 cut(s)	972
BseLI	CCNNNNNNNGG	2 cut(s)	350, 568
BseMII	CTCAG	2 cut(s)	906, 1083
BseNI	ACTGG	1 cut(s)	418
BseRI	GAGGAG	3 cut(s)	46, 169, 938
BseXI	GCAGC	3 cut(s)	138, 283, 727
Bsh1236I	CGCG	2 cut(s)	29, 538
Bsh1285I	CGRYCG	1 cut(s)	98
BshFI	GGCC	2 cut(s)	81, 993
BsiEI	CGRYCG	1 cut(s)	98
BsiHKCI	CYCGRG	1 cut(s)	489
BsiSI	CCGG	2 cut(s)	78, 146
BslFI	GGGAC	1 cut(s)	341
BslI	CCNNNNNNNGG	2 cut(s)	350, 568
BsmAI	GTCTC	5 cut(s)	92, 145, 147, 404, 516
BsmBI	CGTCTC	1 cut(s)	147
BsmFI	GGGAC	1 cut(s)	341
BsmI	GAATGC	1 cut(s)	1120
BsnI	GGCC	2 cut(s)	81, 993
BsoBI	CYCGRG	1 cut(s)	489
Bsp143I	GATC	4 cut(s)	95, 289, 369, 853
BspACI	CCGC	6 cut(s)	5, 8, 111, 114, 478, 1025
BspANI	GGCC	2 cut(s)	81, 993
BspCNI	CTCAG	2 cut(s)	905, 1084
BspFNI	CGCG	2 cut(s)	29, 538
BspHI	TCATGA	1 cut(s)	978
BspLI	GGNNCC	3 cut(s)	453, 994, 1065
BspMAI	CTGCAG	1 cut(s)	301
BspOI	GCTAGC	1 cut(s)	909
BspPI	GGATC	1 cut(s)	848
BsrI	ACTGG	1 cut(s)	418
BssECI	CCNNGG	2 cut(s)	117, 952
BssMI	GATC	4 cut(s)	95, 289, 369, 853
BssSI	CACGAG	1 cut(s)	166
Bst2BI	CACGAG	1 cut(s)	166
Bst4CI	ACNGT	2 cut(s)	586, 805
Bst6I	CTCTTC	1 cut(s)	64
BstAPI	GCANNNNNTGC	2 cut(s)	1018, 1115
BstBAI	YACGTR	2 cut(s)	398, 503
BstC8I	GCNNGC	5 cut(s)	822, 907, 991, 1023, 1107
BstDEI	CTNAG	3 cut(s)	684, 892, 1092
BstDSI	CCRYGG	1 cut(s)	117
BstF5I	GGATG	4 cut(s)	462, 499, 619, 1107
BstFNI	CGCG	2 cut(s)	29, 538
BstHHI	GCGC	1 cut(s)	538
BstKTI	GATC	4 cut(s)	98, 292, 372, 856
BstMAI	GTCTC	5 cut(s)	92, 145, 147, 404, 516
BstMBI	GATC	4 cut(s)	95, 289, 369, 853
BstMCI	CGRYCG	1 cut(s)	98
BstMWI	GCNNNNNNNGC	5 cut(s)	578, 821, 1018, 1115, 1132
BstNSI	RCATGY	1 cut(s)	1109
BstSFI	CTRYAG	1 cut(s)	297
BstUI	CGCG	2 cut(s)	29, 538
BstV1I	GCAGC	3 cut(s)	138, 283, 727
BstV2I	GAAGAC	1 cut(s)	362
BstXI	CCANNNNNNTGG	1 cut(s)	448
BsuRI	GGCC	2 cut(s)	81, 993
BtgI	CCRYGG	1 cut(s)	117
BtgZI	GCGATG	1 cut(s)	190
BtsCI	GGATG	4 cut(s)	462, 499, 619, 1107
Cac8I	GCNNGC	5 cut(s)	822, 907, 991, 1023, 1107
CciI	TCATGA	1 cut(s)	978
CfoI	GCGC	1 cut(s)	538
Cfr13I	GGNCC	2 cut(s)	452, 992
Csp6I	GTAC	2 cut(s)	587, 889
CspCI	CAANNNNNGTGG	2 cut(s)	746, 781
CviAII	CATG	7 cut(s)	388, 437, 910, 979, 1009, 1106, 1123
CviQI	GTAC	2 cut(s)	587, 889
DdeI	CTNAG	3 cut(s)	684, 892, 1092
DpnI	GATC	4 cut(s)	97, 291, 371, 855
DpnII	GATC	4 cut(s)	95, 289, 369, 853
EaeI	YGGCCR	1 cut(s)	79
Eam1104I	CTCTTC	1 cut(s)	64
EarI	CTCTTC	1 cut(s)	64
EciI	GGCGGA	1 cut(s)	100
Eco32I	GATATC	1 cut(s)	559
Eco47I	GGWCC	1 cut(s)	452
Eco57I	CTGAAG	2 cut(s)	254, 299
Eco72I	CACGTG	2 cut(s)	398, 503
Eco88I	CYCGRG	1 cut(s)	489
EcoO109I	RGGNCCY	2 cut(s)	452, 992
EcoRV	GATATC	1 cut(s)	559
EcoT22I	ATGCAT	2 cut(s)	1014, 1107
Esp3I	CGTCTC	1 cut(s)	147
FaeI	CATG	7 cut(s)	391, 440, 913, 982, 1012, 1109, 1126
FalI	AAGNNNNNCTT	2 cut(s)	227, 259
FaqI	GGGAC	1 cut(s)	341
FatI	CATG	7 cut(s)	387, 436, 909, 978, 1008, 1105, 1122
FauI	CCCGC	1 cut(s)	471
Fnu4HI	GCNGC	6 cut(s)	6, 9, 114, 127, 297, 741
FokI	GGATG	4 cut(s)	449, 506, 606, 1114
Fsp4HI	GCNGC	6 cut(s)	6, 9, 114, 127, 297, 741
FspBI	CTAG	2 cut(s)	428, 906
GlaI	GCGC	1 cut(s)	537
GluI	GCNGC	6 cut(s)	6, 9, 114, 127, 297, 741
HaeIII	GGCC	2 cut(s)	81, 993
HapII	CCGG	2 cut(s)	78, 146
HhaI	GCGC	1 cut(s)	538
Hin1II	CATG	7 cut(s)	391, 440, 913, 982, 1012, 1109, 1126
Hin6I	GCGC	1 cut(s)	536
HinP1I	GCGC	1 cut(s)	536
HinfI	GANTC	5 cut(s)	85, 153, 162, 932, 1096
HpaII	CCGG	2 cut(s)	78, 146
Hpy166II	GTNNAC	2 cut(s)	721, 889
Hpy188I	TCNGA	8 cut(s)	40, 158, 279, 672, 895, 953, 1101, 1139
Hpy188III	TCNNGA	3 cut(s)	491, 554, 979
Hpy8I	GTNNAC	2 cut(s)	721, 889
Hpy99I	CGWCG	1 cut(s)	162
HpyAV	CCTTC	5 cut(s)	207, 229, 393, 671, 805
HpyCH4III	ACNGT	2 cut(s)	586, 805
HpyCH4IV	ACGT	3 cut(s)	213, 397, 502
HpyCH4V	TGCA	7 cut(s)	247, 299, 377, 581, 1012, 1105, 1109
HpyF10VI	GCNNNNNNNGC	5 cut(s)	578, 821, 1018, 1115, 1132
HpyF3I	CTNAG	3 cut(s)	684, 892, 1092
HpySE526I	ACGT	3 cut(s)	213, 397, 502
Hsp92II	CATG	7 cut(s)	391, 440, 913, 982, 1012, 1109, 1126
HspAI	GCGC	1 cut(s)	536
Kzo9I	GATC	4 cut(s)	95, 289, 369, 853
LmnI	GCTCC	3 cut(s)	113, 875, 1069
Lsp1109I	GCAGC	3 cut(s)	138, 283, 727
LweI	GCATC	2 cut(s)	95, 1092
MaeI	CTAG	2 cut(s)	428, 906
MaeII	ACGT	3 cut(s)	213, 397, 502
MaeIII	GTNAC	3 cut(s)	184, 214, 1042
MalI	GATC	4 cut(s)	97, 291, 371, 855
MboI	GATC	4 cut(s)	95, 289, 369, 853
MboII	GAAGA	6 cut(s)	9, 51, 183, 292, 367, 994
MluCI	AATT	3 cut(s)	630, 945, 1069
MlyI	GAGTC	2 cut(s)	94, 147
MmeI	TCCRAC	3 cut(s)	181, 650, 679
Mph1103I	ATGCAT	2 cut(s)	1014, 1107
MroXI	GAANNNNTTC	1 cut(s)	239
MseI	TTAA	1 cut(s)	348
MslI	CAYNNNNRTG	3 cut(s)	252, 467, 530
MspA1I	CMGCKG	1 cut(s)	1025
MspI	CCGG	2 cut(s)	78, 146
Mva1269I	GAATGC	1 cut(s)	1120
MvnI	CGCG	2 cut(s)	29, 538
MwoI	GCNNNNNNNGC	5 cut(s)	578, 821, 1018, 1115, 1132
NdeII	GATC	4 cut(s)	95, 289, 369, 853
NheI	GCTAGC	1 cut(s)	905
NlaIII	CATG	7 cut(s)	391, 440, 913, 982, 1012, 1109, 1126
NlaIV	GGNNCC	3 cut(s)	453, 994, 1065
NmuCI	GTSAC	1 cut(s)	1042
NsiI	ATGCAT	2 cut(s)	1014, 1107
NspI	RCATGY	1 cut(s)	1109
OliI	CACNNNNGTG	1 cut(s)	252
PaeI	GCATGC	1 cut(s)	1109
PagI	TCATGA	1 cut(s)	978
PctI	GAATGC	1 cut(s)	1120
PdmI	GAANNNNTTC	1 cut(s)	239
PfeI	GAWTC	3 cut(s)	162, 932, 1096
PkrI	GCNGC	6 cut(s)	7, 10, 115, 128, 298, 742
Ple19I	CGATCG	1 cut(s)	98
PleI	GAGTC	2 cut(s)	93, 147
PmaCI	CACGTG	2 cut(s)	398, 503
PmlI	CACGTG	2 cut(s)	398, 503
PpsI	GAGTC	2 cut(s)	93, 147
Ppu21I	YACGTR	2 cut(s)	398, 503
PpuMI	RGGWCCY	1 cut(s)	452
Psp5II	RGGWCCY	1 cut(s)	452
PspCI	CACGTG	2 cut(s)	398, 503
PspN4I	GGNNCC	3 cut(s)	453, 994, 1065
PspPI	GGNCC	2 cut(s)	452, 992
PspPPI	RGGWCCY	1 cut(s)	452
PstI	CTGCAG	1 cut(s)	301
PvuI	CGATCG	1 cut(s)	98
RsaI	GTAC	2 cut(s)	588, 890
RsaNI	GTAC	2 cut(s)	587, 889
RseI	CAYNNNNRTG	3 cut(s)	252, 467, 530
SaqAI	TTAA	1 cut(s)	348
SatI	GCNGC	6 cut(s)	6, 9, 114, 127, 297, 741
Sau3AI	GATC	4 cut(s)	95, 289, 369, 853
Sau96I	GGNCC	2 cut(s)	452, 992
SchI	GAGTC	2 cut(s)	94, 147
SfaNI	GCATC	2 cut(s)	95, 1092
SfcI	CTRYAG	1 cut(s)	297
SinI	GGWCC	1 cut(s)	452
SmiMI	CAYNNNNRTG	3 cut(s)	252, 467, 530
SphI	GCATGC	1 cut(s)	1109
Sse9I	AATT	3 cut(s)	630, 945, 1069
SsiI	CCGC	6 cut(s)	5, 8, 111, 114, 478, 1025
SspMI	CTAG	2 cut(s)	428, 906
TaaI	ACNGT	2 cut(s)	586, 805
TaiI	ACGT	3 cut(s)	216, 400, 505
TaqI	TCGA	3 cut(s)	103, 292, 657
TasI	AATT	3 cut(s)	630, 945, 1069
TatI	WGTACW	1 cut(s)	888
TauI	GCSGC	3 cut(s)	8, 11, 116
TfiI	GAWTC	3 cut(s)	162, 932, 1096
Tru1I	TTAA	1 cut(s)	348
Tru9I	TTAA	1 cut(s)	348
TseFI	GTSAC	1 cut(s)	1042
TseI	GCWGC	3 cut(s)	126, 296, 740
Tsp45I	GTSAC	1 cut(s)	1042
TspDTI	ATGAA	5 cut(s)	393, 984, 995, 997, 1118
TspGWI	ACGGA	1 cut(s)	172
VpaK11BI	GGWCC	1 cut(s)	452
XapI	RAATTY	2 cut(s)	945, 1069
XceI	RCATGY	1 cut(s)	1109
XmnI	GAANNNNTTC	1 cut(s)	239
XspI	CTAG	2 cut(s)	428, 906
Zsp2I	ATGCAT	2 cut(s)	1014, 1107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.