Auxilin-like protein 1
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g39550 FvH4_2g39550 FvH4_2g39550 |
| malus_domestica | MD08G1028800.v1.1 MD15G1024300.v1.1 |
| prunus_persica | Prupe.1G376600_v2.0.a1 Prupe.1G376600_v2.0.a1 Prupe.1G376600_v2.0.a1 |
| pyrus_communis | pycom15g02090 |
| rosa_chinensis | RchiOBHm_Chr6g0301361 |
| rosa_laevigata | RLG00000011257 |
| rosa_multiflora | Rmu_sc0013354.1_g000026 |
| rosa_roxburghii | Rroxscaffold_7G00166880 |
| rosa_rugosa | Rorug06G0304100 Rorug06G0304200 |
| rosa_samantha | Rh6AG417600 Rh6BG424300 Rh6CG431400 Rh6DG417300 |
| rosa_wichuraiana | Rw6G036140 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 3214 |
| Acc65I | GGTACC | 1 cut(s) | 3202 |
| AccB1I | GGYRCC | 2 cut(s) | 449, 3202 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 5054 |
| AccBSI | CCGCTC | 2 cut(s) | 214, 4806 |
| AccI | GTMKAC | 1 cut(s) | 126 |
| AccII | CGCG | 2 cut(s) | 168, 977 |
| AccIII | TCCGGA | 1 cut(s) | 199 |
| AclWI | GGATC | 9 cut(s) | 380, 750, 2547, 2811, 3075, 3767, 4056, 4778, 4920 |
| AcoI | YGGCCR | 1 cut(s) | 910 |
| AcsI | RAATTY | 7 cut(s) | 848, 955, 1121, 1643, 2052, 4765, 5005 |
| AcuI | CTGAAG | 6 cut(s) | 600, 686, 2379, 3816, 4455, 4617 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 1655, 1755, 1838, 2047, 2587, 2851, 4491, 5054 |
| AflIII | ACRYGT | 3 cut(s) | 465, 542, 2137 |
| AgeI | ACCGGT | 1 cut(s) | 592 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 4744 |
| AhlI | ACTAGT | 1 cut(s) | 1313 |
| AjiI | CACGTC | 1 cut(s) | 4110 |
| AjnI | CCWGG | 3 cut(s) | 1719, 1753, 3584 |
| AleI | CACNNNNGTG | 1 cut(s) | 4834 |
| Alw21I | GWGCWC | 3 cut(s) | 207, 242, 318 |
| Alw26I | GTCTC | 6 cut(s) | 109, 672, 2088, 2437, 2965, 4055 |
| AlwI | GGATC | 9 cut(s) | 380, 750, 2547, 2811, 3075, 3767, 4056, 4778, 4920 |
| Ama87I | CYCGRG | 4 cut(s) | 120, 1161, 4440, 5042 |
| Aor13HI | TCCGGA | 1 cut(s) | 199 |
| AoxI | GGCC | 8 cut(s) | 910, 1433, 1912, 2624, 2888, 3152, 4482, 5045 |
| ApaI | GGGCCC | 3 cut(s) | 2628, 2892, 3156 |
| ApoI | RAATTY | 7 cut(s) | 848, 955, 1121, 1643, 2052, 4765, 5005 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 2546, 2578, 2810, 2842 |
| AseI | ATTAAT | 1 cut(s) | 815 |
| AsiGI | ACCGGT | 1 cut(s) | 592 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 4504, 5228 |
| Asp718I | GGTACC | 1 cut(s) | 3202 |
| AspLEI | GCGC | 1 cut(s) | 28 |
| AsuC2I | CCSGG | 2 cut(s) | 4636, 4722 |
| AsuII | TTCGAA | 1 cut(s) | 374 |
| AvaI | CYCGRG | 4 cut(s) | 120, 1161, 4440, 5042 |
| AvaII | GGWCC | 4 cut(s) | 2605, 2869, 3133, 3984 |
| AxyI | CCTNAGG | 1 cut(s) | 2160 |
| BaeGI | GKGCMC | 3 cut(s) | 2628, 2892, 3156 |
| BalI | TGGCCA | 1 cut(s) | 912 |
| BanI | GGYRCC | 2 cut(s) | 449, 3202 |
| BanII | GRGCYC | 6 cut(s) | 207, 242, 318, 2628, 2892, 3156 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 236, 268 |
| BauI | CACGAG | 1 cut(s) | 4416 |
| BbsI | GAAGAC | 7 cut(s) | 256, 1058, 1163, 1811, 2256, 3462, 3582 |
| Bbv12I | GWGCWC | 3 cut(s) | 207, 242, 318 |
| BbvCI | CCTCAGC | 2 cut(s) | 726, 4479 |
| BceAI | ACGGC | 2 cut(s) | 82, 289 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 169, 203, 372, 406 |
| BciT130I | CCWGG | 3 cut(s) | 1721, 1755, 3586 |
| BclI | TGATCA | 3 cut(s) | 2497, 2761, 3025 |
| BcnI | CCSGG | 2 cut(s) | 4636, 4722 |
| BcoDI | GTCTC | 6 cut(s) | 109, 672, 2088, 2437, 2965, 4055 |
| BcuI | ACTAGT | 1 cut(s) | 1313 |
| BfaI | CTAG | 5 cut(s) | 885, 1314, 1838, 4692, 4701 |
| BfmI | CTRYAG | 2 cut(s) | 4191, 4272 |
| BfoI | RGCGCY | 1 cut(s) | 29 |
| BfuAI | ACCTGC | 1 cut(s) | 3214 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 977, 1817 |
| BlpI | GCTNAGC | 1 cut(s) | 3340 |
| Bme1390I | CCNGG | 5 cut(s) | 1721, 1755, 3586, 4636, 4722 |
| Bme18I | GGWCC | 4 cut(s) | 2605, 2869, 3133, 3984 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 4744 |
| BmeT110I | CYCGRG | 4 cut(s) | 120, 1161, 4440, 5042 |
| BmgBI | CACGTC | 1 cut(s) | 4110 |
| BmrFI | CCNGG | 5 cut(s) | 1721, 1755, 3586, 4636, 4722 |
| BmrI | ACTGGG | 1 cut(s) | 1440 |
| BmsI | GCATC | 9 cut(s) | 98, 437, 1453, 1951, 2145, 3370, 3381, 4889, 4957 |
| BmuI | ACTGGG | 1 cut(s) | 1440 |
| BpiI | GAAGAC | 7 cut(s) | 256, 1058, 1163, 1811, 2256, 3462, 3582 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 1144, 1176, 1252, 1284, 1360, 1392 |
| BpmI | CTGGAG | 4 cut(s) | 28, 1515, 2690, 2954 |
| Bpu10I | CCTNAGC | 4 cut(s) | 726, 1485, 4479, 4531 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 3340 |
| Bpu14I | TTCGAA | 1 cut(s) | 374 |
| BpuMI | CCSGG | 2 cut(s) | 4636, 4722 |
| BsaAI | YACGTR | 1 cut(s) | 543 |
| BsaI | GGTCTC | 1 cut(s) | 672 |
| BsaWI | WCCGGW | 4 cut(s) | 184, 199, 592, 1189 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 1655, 1755, 1838, 2047, 2587, 2851, 4491, 5054 |
| Bse118I | RCCGGY | 2 cut(s) | 352, 592 |
| Bse21I | CCTNAGG | 1 cut(s) | 2160 |
| Bse3DI | GCAATG | 3 cut(s) | 3094, 4479, 5015 |
| BseAI | TCCGGA | 1 cut(s) | 199 |
| BseBI | CCWGG | 3 cut(s) | 1721, 1755, 3586 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 1655, 1755, 1838, 2047, 2587, 2851, 4491, 5054 |
| BseMI | GCAATG | 3 cut(s) | 3094, 4479, 5015 |
| BseSI | GKGCMC | 3 cut(s) | 2628, 2892, 3156 |
| BseYI | CCCAGC | 1 cut(s) | 685 |
| BsgI | GTGCAG | 2 cut(s) | 3192, 4011 |
| Bsh1236I | CGCG | 2 cut(s) | 168, 977 |
| Bsh1285I | CGRYCG | 1 cut(s) | 368 |
| BshFI | GGCC | 8 cut(s) | 912, 1435, 1914, 2626, 2890, 3154, 4484, 5047 |
| BshNI | GGYRCC | 2 cut(s) | 449, 3202 |
| BshTI | ACCGGT | 1 cut(s) | 592 |
| BsiEI | CGRYCG | 1 cut(s) | 368 |
| BsiHKAI | GWGCWC | 3 cut(s) | 207, 242, 318 |
| BsiHKCI | CYCGRG | 4 cut(s) | 120, 1161, 4440, 5042 |
| BsiSI | CCGG | 7 cut(s) | 185, 200, 353, 593, 1190, 4635, 4721 |
| BsiWI | CGTACG | 1 cut(s) | 1541 |
| BslFI | GGGAC | 1 cut(s) | 3997 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 1655, 1755, 1838, 2047, 2587, 2851, 4491, 5054 |
| BsmAI | GTCTC | 6 cut(s) | 109, 672, 2088, 2437, 2965, 4055 |
| BsmFI | GGGAC | 1 cut(s) | 3997 |
| BsmI | GAATGC | 1 cut(s) | 3394 |
| BsnI | GGCC | 8 cut(s) | 912, 1435, 1914, 2626, 2890, 3154, 4484, 5047 |
| Bso31I | GGTCTC | 1 cut(s) | 672 |
| BsoBI | CYCGRG | 4 cut(s) | 120, 1161, 4440, 5042 |
| Bsp119I | TTCGAA | 1 cut(s) | 374 |
| Bsp120I | GGGCCC | 3 cut(s) | 2624, 2888, 3152 |
| Bsp1286I | GDGCHC | 6 cut(s) | 207, 242, 318, 2628, 2892, 3156 |
| Bsp13I | TCCGGA | 1 cut(s) | 199 |
| Bsp1407I | TGTACA | 2 cut(s) | 4073, 4921 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 3340 |
| Bsp19I | CCATGG | 1 cut(s) | 1812 |
| BspANI | GGCC | 8 cut(s) | 912, 1435, 1914, 2626, 2890, 3154, 4484, 5047 |
| BspEI | TCCGGA | 1 cut(s) | 199 |
| BspFNI | CGCG | 2 cut(s) | 168, 977 |
| BspHI | TCATGA | 1 cut(s) | 4051 |
| BspMAI | CTGCAG | 2 cut(s) | 4195, 4276 |
| BspMI | ACCTGC | 1 cut(s) | 3214 |
| BspPI | GGATC | 9 cut(s) | 380, 750, 2547, 2811, 3075, 3767, 4056, 4778, 4920 |
| BspQI | GCTCTTC | 2 cut(s) | 181, 5235 |
| BspT104I | TTCGAA | 1 cut(s) | 374 |
| BspT107I | GGYRCC | 2 cut(s) | 449, 3202 |
| BspTNI | GGTCTC | 1 cut(s) | 672 |
| BsrBI | CCGCTC | 2 cut(s) | 214, 4806 |
| BsrDI | GCAATG | 3 cut(s) | 3094, 4479, 5015 |
| BsrFI | RCCGGY | 2 cut(s) | 352, 592 |
| BsrGI | TGTACA | 2 cut(s) | 4073, 4921 |
| BssAI | RCCGGY | 2 cut(s) | 352, 592 |
| BssSI | CACGAG | 1 cut(s) | 4416 |
| BssT1I | CCWWGG | 1 cut(s) | 1812 |
| Bst2BI | CACGAG | 1 cut(s) | 4416 |
| Bst2UI | CCWGG | 3 cut(s) | 1721, 1755, 3586 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 4877 |
| BstAUI | TGTACA | 2 cut(s) | 4073, 4921 |
| BstBAI | YACGTR | 1 cut(s) | 543 |
| BstBI | TTCGAA | 1 cut(s) | 374 |
| BstC8I | GCNNGC | 9 cut(s) | 1437, 2282, 3465, 4350, 4614, 4662, 4935, 5013, 5167 |
| BstDSI | CCRYGG | 6 cut(s) | 21, 166, 399, 975, 1812, 2526 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 1653, 2585, 2849 |
| BstFNI | CGCG | 2 cut(s) | 168, 977 |
| BstH2I | RGCGCY | 1 cut(s) | 29 |
| BstHHI | GCGC | 1 cut(s) | 28 |
| BstMAI | GTCTC | 6 cut(s) | 109, 672, 2088, 2437, 2965, 4055 |
| BstMCI | CGRYCG | 1 cut(s) | 368 |
| BstNI | CCWGG | 3 cut(s) | 1721, 1755, 3586 |
| BstSCI | CCNGG | 5 cut(s) | 1719, 1753, 3584, 4634, 4720 |
| BstSFI | CTRYAG | 2 cut(s) | 4191, 4272 |
| BstSLI | GKGCMC | 3 cut(s) | 2628, 2892, 3156 |
| BstUI | CGCG | 2 cut(s) | 168, 977 |
| BstV2I | GAAGAC | 7 cut(s) | 256, 1058, 1163, 1811, 2256, 3462, 3582 |
| BstX2I | RGATCY | 6 cut(s) | 385, 755, 2539, 3067, 3772, 4912 |
| BstYI | RGATCY | 6 cut(s) | 385, 755, 2539, 3067, 3772, 4912 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2160 |
| BsuRI | GGCC | 8 cut(s) | 912, 1435, 1914, 2626, 2890, 3154, 4484, 5047 |
| BtgI | CCRYGG | 6 cut(s) | 21, 166, 399, 975, 1812, 2526 |
| BtrI | CACGTC | 1 cut(s) | 4110 |
| BtsI | GCAGTG | 1 cut(s) | 306 |
| BveI | ACCTGC | 1 cut(s) | 3214 |
| Cac8I | GCNNGC | 9 cut(s) | 1437, 2282, 3465, 4350, 4614, 4662, 4935, 5013, 5167 |
| CciI | TCATGA | 1 cut(s) | 4051 |
| CfoI | GCGC | 1 cut(s) | 28 |
| Cfr10I | RCCGGY | 2 cut(s) | 352, 592 |
| Cfr42I | CCGCGG | 2 cut(s) | 169, 978 |
| CspAI | ACCGGT | 1 cut(s) | 592 |
| DriI | GACNNNNNGTC | 1 cut(s) | 4744 |
| EaeI | YGGCCR | 1 cut(s) | 910 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 4744 |
| Ecl136II | GAGCTC | 3 cut(s) | 205, 240, 316 |
| Eco130I | CCWWGG | 1 cut(s) | 1812 |
| Eco147I | AGGCCT | 1 cut(s) | 1914 |
| Eco24I | GRGCYC | 6 cut(s) | 207, 242, 318, 2628, 2892, 3156 |
| Eco31I | GGTCTC | 1 cut(s) | 672 |
| Eco32I | GATATC | 1 cut(s) | 3352 |
| Eco47I | GGWCC | 4 cut(s) | 2605, 2869, 3133, 3984 |
| Eco53kI | GAGCTC | 3 cut(s) | 205, 240, 316 |
| Eco57I | CTGAAG | 6 cut(s) | 600, 686, 2379, 3816, 4455, 4617 |
| Eco81I | CCTNAGG | 1 cut(s) | 2160 |
| Eco88I | CYCGRG | 4 cut(s) | 120, 1161, 4440, 5042 |
| EcoICRI | GAGCTC | 3 cut(s) | 205, 240, 316 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 1653, 2585, 2849 |
| EcoO109I | RGGNCCY | 6 cut(s) | 2605, 2624, 2869, 2888, 3133, 3152 |
| EcoRII | CCWGG | 3 cut(s) | 1719, 1753, 3584 |
| EcoRV | GATATC | 1 cut(s) | 3352 |
| EcoT14I | CCWWGG | 1 cut(s) | 1812 |
| EcoT22I | ATGCAT | 1 cut(s) | 3396 |
| EcoT38I | GRGCYC | 6 cut(s) | 207, 242, 318, 2628, 2892, 3156 |
| ErhI | CCWWGG | 1 cut(s) | 1812 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 2061, 2093, 3447, 3479 |
| FaqI | GGGAC | 1 cut(s) | 3997 |
| FauI | CCCGC | 4 cut(s) | 173, 709, 4902, 5004 |
| FauNDI | CATATG | 1 cut(s) | 4014 |
| FbaI | TGATCA | 3 cut(s) | 2497, 2761, 3025 |
| FblI | GTMKAC | 1 cut(s) | 126 |
| FriOI | GRGCYC | 6 cut(s) | 207, 242, 318, 2628, 2892, 3156 |
| FspBI | CTAG | 5 cut(s) | 885, 1314, 1838, 4692, 4701 |
| GlaI | GCGC | 1 cut(s) | 27 |
| GsaI | CCCAGC | 1 cut(s) | 689 |
| GsuI | CTGGAG | 4 cut(s) | 28, 1515, 2690, 2954 |
| HaeII | RGCGCY | 1 cut(s) | 29 |
| HaeIII | GGCC | 8 cut(s) | 912, 1435, 1914, 2626, 2890, 3154, 4484, 5047 |
| HapII | CCGG | 7 cut(s) | 185, 200, 353, 593, 1190, 4635, 4721 |
| HhaI | GCGC | 1 cut(s) | 28 |
| Hin6I | GCGC | 1 cut(s) | 26 |
| HinP1I | GCGC | 1 cut(s) | 26 |
| HincII | GTYRAC | 2 cut(s) | 127, 1780 |
| HindII | GTYRAC | 2 cut(s) | 127, 1780 |
| HindIII | AAGCTT | 5 cut(s) | 12, 1998, 2027, 2034, 2372 |
| HpaII | CCGG | 7 cut(s) | 185, 200, 353, 593, 1190, 4635, 4721 |
| Hpy166II | GTNNAC | 7 cut(s) | 127, 949, 1715, 1780, 2239, 3274, 5184 |
| Hpy8I | GTNNAC | 7 cut(s) | 127, 949, 1715, 1780, 2239, 3274, 5184 |
| Hpy99I | CGWCG | 3 cut(s) | 68, 131, 2195 |
| HpyCH4IV | ACGT | 5 cut(s) | 261, 542, 4109, 4573, 4876 |
| HpySE526I | ACGT | 5 cut(s) | 261, 542, 4109, 4573, 4876 |
| HspAI | GCGC | 1 cut(s) | 26 |
| Kpn2I | TCCGGA | 1 cut(s) | 199 |
| KpnI | GGTACC | 1 cut(s) | 3206 |
| Ksp22I | TGATCA | 3 cut(s) | 2497, 2761, 3025 |
| KspI | CCGCGG | 2 cut(s) | 169, 978 |
| LguI | GCTCTTC | 2 cut(s) | 181, 5235 |
| LweI | GCATC | 9 cut(s) | 98, 437, 1453, 1951, 2145, 3370, 3381, 4889, 4957 |
| MaeI | CTAG | 5 cut(s) | 885, 1314, 1838, 4692, 4701 |
| MaeII | ACGT | 5 cut(s) | 261, 542, 4109, 4573, 4876 |
| MbiI | CCGCTC | 2 cut(s) | 214, 4806 |
| MflI | RGATCY | 6 cut(s) | 385, 755, 2539, 3067, 3772, 4912 |
| MhlI | GDGCHC | 6 cut(s) | 207, 242, 318, 2628, 2892, 3156 |
| MlsI | TGGCCA | 1 cut(s) | 912 |
| MluNI | TGGCCA | 1 cut(s) | 912 |
| MmeI | TCCRAC | 2 cut(s) | 557, 4830 |
| Mox20I | TGGCCA | 1 cut(s) | 912 |
| Mph1103I | ATGCAT | 1 cut(s) | 3396 |
| MroI | TCCGGA | 1 cut(s) | 199 |
| MroXI | GAANNNNTTC | 2 cut(s) | 4504, 5228 |
| MscI | TGGCCA | 1 cut(s) | 912 |
| MseI | TTAA | 7 cut(s) | 815, 1086, 1956, 2307, 3639, 3809, 4019 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1938, 3408, 4834 |
| Msp20I | TGGCCA | 1 cut(s) | 912 |
| MspA1I | CMGCKG | 5 cut(s) | 48, 86, 168, 689, 977 |
| MspI | CCGG | 7 cut(s) | 185, 200, 353, 593, 1190, 4635, 4721 |
| MspR9I | CCNGG | 5 cut(s) | 1721, 1755, 3586, 4636, 4722 |
| Mva1269I | GAATGC | 1 cut(s) | 3394 |
| MvaI | CCWGG | 3 cut(s) | 1721, 1755, 3586 |
| MvnI | CGCG | 2 cut(s) | 168, 977 |
| NciI | CCSGG | 2 cut(s) | 4636, 4722 |
| NcoI | CCATGG | 1 cut(s) | 1812 |
| NdeI | CATATG | 1 cut(s) | 4014 |
| NmeAIII | GCCGAG | 2 cut(s) | 4963, 4996 |
| NmuCI | GTSAC | 7 cut(s) | 50, 417, 2521, 2785, 3049, 3304, 3853 |
| NsiI | ATGCAT | 1 cut(s) | 3396 |
| NspV | TTCGAA | 1 cut(s) | 374 |
| OliI | CACNNNNGTG | 1 cut(s) | 4834 |
| PaeI | GCATGC | 1 cut(s) | 4352 |
| PaeR7I | CTCGAG | 1 cut(s) | 4440 |
| PagI | TCATGA | 1 cut(s) | 4051 |
| PasI | CCCWGGG | 1 cut(s) | 1754 |
| PceI | AGGCCT | 1 cut(s) | 1914 |
| PciI | ACATGT | 2 cut(s) | 465, 2137 |
| PciSI | GCTCTTC | 2 cut(s) | 181, 5235 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 135, 153, 4414 |
| PctI | GAATGC | 1 cut(s) | 3394 |
| PdmI | GAANNNNTTC | 2 cut(s) | 4504, 5228 |
| Pfl23II | CGTACG | 1 cut(s) | 1541 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 5054 |
| PfoI | TCCNGGA | 1 cut(s) | 4634 |
| PinAI | ACCGGT | 1 cut(s) | 592 |
| Ppu21I | YACGTR | 1 cut(s) | 543 |
| PpuMI | RGGWCCY | 3 cut(s) | 2605, 2869, 3133 |
| PscI | ACATGT | 2 cut(s) | 465, 2137 |
| PshBI | ATTAAT | 1 cut(s) | 815 |
| Psp124BI | GAGCTC | 3 cut(s) | 207, 242, 318 |
| Psp5II | RGGWCCY | 3 cut(s) | 2605, 2869, 3133 |
| Psp6I | CCWGG | 3 cut(s) | 1719, 1753, 3584 |
| PspFI | CCCAGC | 1 cut(s) | 685 |
| PspGI | CCWGG | 3 cut(s) | 1719, 1753, 3584 |
| PspLI | CGTACG | 1 cut(s) | 1541 |
| PspOMI | GGGCCC | 3 cut(s) | 2624, 2888, 3152 |
| PspPPI | RGGWCCY | 3 cut(s) | 2605, 2869, 3133 |
| PstI | CTGCAG | 2 cut(s) | 4195, 4276 |
| PsuI | RGATCY | 6 cut(s) | 385, 755, 2539, 3067, 3772, 4912 |
| PvuII | CAGCTG | 2 cut(s) | 86, 689 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1938, 3408, 4834 |
| SacI | GAGCTC | 3 cut(s) | 207, 242, 318 |
| SacII | CCGCGG | 2 cut(s) | 169, 978 |
| SalI | GTCGAC | 1 cut(s) | 125 |
| SapI | GCTCTTC | 2 cut(s) | 181, 5235 |
| SaqAI | TTAA | 7 cut(s) | 815, 1086, 1956, 2307, 3639, 3809, 4019 |
| ScrFI | CCNGG | 5 cut(s) | 1721, 1755, 3586, 4636, 4722 |
| SduI | GDGCHC | 6 cut(s) | 207, 242, 318, 2628, 2892, 3156 |
| SfaNI | GCATC | 9 cut(s) | 98, 437, 1453, 1951, 2145, 3370, 3381, 4889, 4957 |
| SfcI | CTRYAG | 2 cut(s) | 4191, 4272 |
| Sfr274I | CTCGAG | 1 cut(s) | 4440 |
| Sfr303I | CCGCGG | 2 cut(s) | 169, 978 |
| SfuI | TTCGAA | 1 cut(s) | 374 |
| SgrBI | CCGCGG | 2 cut(s) | 169, 978 |
| SinI | GGWCC | 4 cut(s) | 2605, 2869, 3133, 3984 |
| SlaI | CTCGAG | 1 cut(s) | 4440 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1938, 3408, 4834 |
| SpeI | ACTAGT | 1 cut(s) | 1313 |
| SphI | GCATGC | 1 cut(s) | 4352 |
| SseBI | AGGCCT | 1 cut(s) | 1914 |
| SspI | AATATT | 1 cut(s) | 2330 |
| SspMI | CTAG | 5 cut(s) | 885, 1314, 1838, 4692, 4701 |
| SstI | GAGCTC | 3 cut(s) | 207, 242, 318 |
| StuI | AGGCCT | 1 cut(s) | 1914 |
| StyD4I | CCNGG | 5 cut(s) | 1719, 1753, 3584, 4634, 4720 |
| StyI | CCWWGG | 1 cut(s) | 1812 |
| TaiI | ACGT | 5 cut(s) | 264, 545, 4112, 4576, 4879 |
| TatI | WGTACW | 8 cut(s) | 1316, 2504, 2768, 3032, 4073, 4214, 4921, 5181 |
| TauI | GCSGC | 6 cut(s) | 171, 174, 968, 980, 1574, 5099 |
| Tru1I | TTAA | 7 cut(s) | 815, 1086, 1956, 2307, 3639, 3809, 4019 |
| Tru9I | TTAA | 7 cut(s) | 815, 1086, 1956, 2307, 3639, 3809, 4019 |
| TseFI | GTSAC | 7 cut(s) | 50, 417, 2521, 2785, 3049, 3304, 3853 |
| Tsp45I | GTSAC | 7 cut(s) | 50, 417, 2521, 2785, 3049, 3304, 3853 |
| TspGWI | ACGGA | 5 cut(s) | 10, 145, 665, 2770, 3026 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 5054 |
| VpaK11BI | GGWCC | 4 cut(s) | 2605, 2869, 3133, 3984 |
| VspI | ATTAAT | 1 cut(s) | 815 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 1653, 2585, 2849 |
| XapI | RAATTY | 7 cut(s) | 848, 955, 1121, 1643, 2052, 4765, 5005 |
| XbaI | TCTAGA | 2 cut(s) | 884, 4700 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 5055 |
| XhoI | CTCGAG | 1 cut(s) | 4440 |
| XmiI | GTMKAC | 1 cut(s) | 126 |
| XmnI | GAANNNNTTC | 2 cut(s) | 4504, 5228 |
| XspI | CTAG | 5 cut(s) | 885, 1314, 1838, 4692, 4701 |
| Zsp2I | ATGCAT | 1 cut(s) | 3396 |