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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G56870 AT3G56870 |
| fragaria_vesca | FvH4_2g39990 FvH4_2g39990 FvH4_2g39990 FvH4_2g39990 FvH4_2g39990 |
| malus_domestica | MD08G1033800.v1.1 MD15G1030400.v1.1 |
| prunus_persica | Prupe.1G381200_v2.0.a1 |
| pyrus_communis | pycom08g02700 pycom15g02670 |
| rosa_chinensis | RchiOBHm_Chr6g0300761 |
| rosa_laevigata | RLG00000011304 |
| rosa_multiflora | Rmu_co8197360.1_g000001 Rmu_sc0003626.1_g000001 Rmu_sc0026201.1_g000001 |
| rosa_roxburghii | Rroxscaffold_7G00167440 |
| rosa_rugosa | Rorug06G0298900 Rorug06G0299000 |
| rosa_samantha | Rh6AG411800 Rh6BG419000 Rh6CG426500 Rh6DG411900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 748 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 43 |
| AccII | CGCG | 2 cut(s) | 84, 1843 |
| AciI | CCGC | 4 cut(s) | 84, 170, 1287, 1841 |
| AclI | AACGTT | 2 cut(s) | 391, 984 |
| AclWI | GGATC | 3 cut(s) | 199, 869, 1394 |
| AcoI | YGGCCR | 1 cut(s) | 89 |
| AcsI | RAATTY | 3 cut(s) | 165, 1003, 1057 |
| AcuI | CTGAAG | 2 cut(s) | 294, 371 |
| AcyI | GRCGYC | 1 cut(s) | 2055 |
| AdeI | CACNNNGTG | 1 cut(s) | 1857 |
| AfaI | GTAC | 3 cut(s) | 96, 241, 1861 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 43, 629, 698, 909, 1181, 1915 |
| AjnI | CCWGG | 4 cut(s) | 36, 42, 1381, 1481 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 672, 704 |
| AluBI | AGCT | 5 cut(s) | 773, 1411, 1709, 2123, 2134 |
| AluI | AGCT | 5 cut(s) | 773, 1411, 1709, 2123, 2134 |
| Alw21I | GWGCWC | 2 cut(s) | 431, 1711 |
| Alw26I | GTCTC | 4 cut(s) | 359, 579, 1112, 1383 |
| AlwI | GGATC | 3 cut(s) | 199, 869, 1394 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 43 |
| Ama87I | CYCGRG | 2 cut(s) | 1273, 1994 |
| AoxI | GGCC | 8 cut(s) | 39, 89, 528, 714, 1578, 1614, 1715, 1998 |
| ApeKI | GCWGC | 3 cut(s) | 695, 773, 1453 |
| ApoI | RAATTY | 3 cut(s) | 165, 1003, 1057 |
| AseI | ATTAAT | 1 cut(s) | 1788 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 391, 1189, 1876 |
| AspS9I | GGNCC | 3 cut(s) | 40, 1172, 1715 |
| AsuC2I | CCSGG | 1 cut(s) | 1855 |
| AsuHPI | GGTGA | 9 cut(s) | 161, 233, 423, 713, 1004, 1160, 1218, 1435, 1578 |
| AsuII | TTCGAA | 1 cut(s) | 1129 |
| AvaI | CYCGRG | 2 cut(s) | 1273, 1994 |
| AvaII | GGWCC | 1 cut(s) | 1172 |
| AxyI | CCTNAGG | 1 cut(s) | 904 |
| BanI | GGYRCC | 1 cut(s) | 748 |
| BanII | GRGCYC | 2 cut(s) | 1280, 1711 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1971, 2003 |
| Bbv12I | GWGCWC | 2 cut(s) | 431, 1711 |
| BbvCI | CCTCAGC | 1 cut(s) | 1323 |
| BbvI | GCAGC | 3 cut(s) | 682, 760, 1465 |
| BccI | CCATC | 3 cut(s) | 293, 323, 903 |
| BceAI | ACGGC | 1 cut(s) | 104 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1023, 1057, 2042, 2076 |
| BciT130I | CCWGG | 4 cut(s) | 38, 44, 1383, 1483 |
| BclI | TGATCA | 1 cut(s) | 1720 |
| BcnI | CCSGG | 1 cut(s) | 1855 |
| BcoDI | GTCTC | 4 cut(s) | 359, 579, 1112, 1383 |
| BfaI | CTAG | 2 cut(s) | 1260, 1440 |
| BisI | GCNGC | 3 cut(s) | 696, 774, 1454 |
| BlsI | GCNGC | 3 cut(s) | 697, 775, 1455 |
| BmcAI | AGTACT | 2 cut(s) | 96, 241 |
| Bme1390I | CCNGG | 5 cut(s) | 38, 44, 1383, 1483, 1855 |
| Bme18I | GGWCC | 1 cut(s) | 1172 |
| BmeT110I | CYCGRG | 2 cut(s) | 1273, 1994 |
| BmgT120I | GGNCC | 3 cut(s) | 40, 1172, 1715 |
| BmiI | GGNNCC | 3 cut(s) | 654, 750, 1173 |
| BmrFI | CCNGG | 5 cut(s) | 38, 44, 1383, 1483, 1855 |
| BmrI | ACTGGG | 1 cut(s) | 1647 |
| BmsI | GCATC | 5 cut(s) | 127, 1390, 1815, 1902, 2050 |
| BmuI | ACTGGG | 1 cut(s) | 1647 |
| BpmI | CTGGAG | 1 cut(s) | 1365 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1323 |
| Bpu14I | TTCGAA | 1 cut(s) | 1129 |
| BpuEI | CTTGAG | 1 cut(s) | 1695 |
| BpuMI | CCSGG | 1 cut(s) | 1855 |
| BsaBI | GATNNNNATC | 2 cut(s) | 480, 2184 |
| BsaHI | GRCGYC | 1 cut(s) | 2055 |
| BsaI | GGTCTC | 1 cut(s) | 1112 |
| BsaJI | CCNNGG | 7 cut(s) | 42, 1137, 1229, 1317, 1382, 1821, 1995 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1064, 1094, 1426, 1456 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 43, 629, 698, 909, 1181, 1915 |
| Bse1I | ACTGG | 4 cut(s) | 92, 1245, 1425, 1653 |
| Bse21I | CCTNAGG | 1 cut(s) | 904 |
| Bse3DI | GCAATG | 2 cut(s) | 310, 1890 |
| Bse8I | GATNNNNATC | 2 cut(s) | 480, 2184 |
| BseBI | CCWGG | 4 cut(s) | 38, 44, 1383, 1483 |
| BseDI | CCNNGG | 7 cut(s) | 42, 1137, 1229, 1317, 1382, 1821, 1995 |
| BseGI | GGATG | 5 cut(s) | 334, 609, 914, 1096, 1806 |
| BseJI | GATNNNNATC | 2 cut(s) | 480, 2184 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 43, 629, 698, 909, 1181, 1915 |
| BseMI | GCAATG | 2 cut(s) | 310, 1890 |
| BseMII | CTCAG | 6 cut(s) | 112, 654, 918, 1077, 1194, 1314 |
| BseNI | ACTGG | 4 cut(s) | 92, 1245, 1425, 1653 |
| BseRI | GAGGAG | 3 cut(s) | 1072, 1340, 1452 |
| BseXI | GCAGC | 3 cut(s) | 682, 760, 1465 |
| BseYI | CCCAGC | 1 cut(s) | 2123 |
| BsgI | GTGCAG | 3 cut(s) | 891, 1383, 1595 |
| Bsh1236I | CGCG | 2 cut(s) | 84, 1843 |
| BshFI | GGCC | 8 cut(s) | 41, 91, 530, 716, 1580, 1616, 1717, 2000 |
| BshNI | GGYRCC | 1 cut(s) | 748 |
| BsiHKAI | GWGCWC | 2 cut(s) | 431, 1711 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1273, 1994 |
| BsiSI | CCGG | 3 cut(s) | 309, 623, 1854 |
| BslFI | GGGAC | 2 cut(s) | 1185, 1635 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 43, 629, 698, 909, 1181, 1915 |
| BsmAI | GTCTC | 4 cut(s) | 359, 579, 1112, 1383 |
| BsmFI | GGGAC | 2 cut(s) | 1185, 1635 |
| BsmI | GAATGC | 1 cut(s) | 1895 |
| BsnI | GGCC | 8 cut(s) | 41, 91, 530, 716, 1580, 1616, 1717, 2000 |
| Bso31I | GGTCTC | 1 cut(s) | 1112 |
| BsoBI | CYCGRG | 2 cut(s) | 1273, 1994 |
| Bsp119I | TTCGAA | 1 cut(s) | 1129 |
| Bsp1286I | GDGCHC | 3 cut(s) | 431, 1280, 1711 |
| Bsp143I | GATC | 9 cut(s) | 191, 481, 874, 1051, 1153, 1386, 1720, 1725, 2179 |
| BspACI | CCGC | 4 cut(s) | 84, 170, 1287, 1841 |
| BspANI | GGCC | 8 cut(s) | 41, 91, 530, 716, 1580, 1616, 1717, 2000 |
| BspCNI | CTCAG | 6 cut(s) | 111, 655, 917, 1078, 1195, 1315 |
| BspFNI | CGCG | 2 cut(s) | 84, 1843 |
| BspLI | GGNNCC | 3 cut(s) | 654, 750, 1173 |
| BspPI | GGATC | 3 cut(s) | 199, 869, 1394 |
| BspT104I | TTCGAA | 1 cut(s) | 1129 |
| BspT107I | GGYRCC | 1 cut(s) | 748 |
| BspTNI | GGTCTC | 1 cut(s) | 1112 |
| BsrDI | GCAATG | 2 cut(s) | 310, 1890 |
| BsrI | ACTGG | 4 cut(s) | 92, 1245, 1425, 1653 |
| BssECI | CCNNGG | 7 cut(s) | 42, 1137, 1229, 1317, 1382, 1821, 1995 |
| BssMI | GATC | 9 cut(s) | 191, 481, 874, 1051, 1153, 1386, 1720, 1725, 2179 |
| BssNI | GRCGYC | 1 cut(s) | 2055 |
| BssT1I | CCWWGG | 2 cut(s) | 1229, 1821 |
| Bst2UI | CCWGG | 4 cut(s) | 38, 44, 1383, 1483 |
| Bst4CI | ACNGT | 6 cut(s) | 244, 259, 560, 1565, 1608, 1640 |
| Bst6I | CTCTTC | 1 cut(s) | 465 |
| BstACI | GRCGYC | 1 cut(s) | 2055 |
| BstBI | TTCGAA | 1 cut(s) | 1129 |
| BstC8I | GCNNGC | 3 cut(s) | 82, 1252, 1578 |
| BstDEI | CTNAG | 7 cut(s) | 98, 497, 663, 904, 1086, 1203, 1323 |
| BstDSI | CCRYGG | 1 cut(s) | 1317 |
| BstF5I | GGATG | 5 cut(s) | 334, 609, 914, 1096, 1806 |
| BstFNI | CGCG | 2 cut(s) | 84, 1843 |
| BstKTI | GATC | 9 cut(s) | 194, 484, 877, 1054, 1156, 1389, 1723, 1728, 2182 |
| BstMAI | GTCTC | 4 cut(s) | 359, 579, 1112, 1383 |
| BstMBI | GATC | 9 cut(s) | 191, 481, 874, 1051, 1153, 1386, 1720, 1725, 2179 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 300, 773, 1256, 1284, 2006, 2120 |
| BstNI | CCWGG | 4 cut(s) | 38, 44, 1383, 1483 |
| BstNSI | RCATGY | 1 cut(s) | 372 |
| BstSCI | CCNGG | 5 cut(s) | 36, 42, 1381, 1481, 1853 |
| BstUI | CGCG | 2 cut(s) | 84, 1843 |
| BstV1I | GCAGC | 3 cut(s) | 682, 760, 1465 |
| BstX2I | RGATCY | 2 cut(s) | 874, 1386 |
| BstYI | RGATCY | 2 cut(s) | 874, 1386 |
| Bsu36I | CCTNAGG | 1 cut(s) | 904 |
| BsuRI | GGCC | 8 cut(s) | 41, 91, 530, 716, 1580, 1616, 1717, 2000 |
| BtgI | CCRYGG | 1 cut(s) | 1317 |
| BtsCI | GGATG | 5 cut(s) | 334, 609, 914, 1096, 1806 |
| BtsI | GCAGTG | 1 cut(s) | 301 |
| BtsIMutI | CAGTG | 6 cut(s) | 301, 347, 1169, 1252, 1418, 1645 |
| Cac8I | GCNNGC | 3 cut(s) | 82, 1252, 1578 |
| CaiI | CAGNNNCTG | 1 cut(s) | 43 |
| Cfr13I | GGNCC | 3 cut(s) | 40, 1172, 1715 |
| CseI | GACGC | 2 cut(s) | 1445, 2063 |
| Csp6I | GTAC | 3 cut(s) | 95, 240, 1860 |
| CviQI | GTAC | 3 cut(s) | 95, 240, 1860 |
| DdeI | CTNAG | 7 cut(s) | 98, 497, 663, 904, 1086, 1203, 1323 |
| DpnI | GATC | 9 cut(s) | 193, 483, 876, 1053, 1155, 1388, 1722, 1727, 2181 |
| DpnII | GATC | 9 cut(s) | 191, 481, 874, 1051, 1153, 1386, 1720, 1725, 2179 |
| DraI | TTTAAA | 1 cut(s) | 1446 |
| DraIII | CACNNNGTG | 1 cut(s) | 1857 |
| EaeI | YGGCCR | 1 cut(s) | 89 |
| Eam1104I | CTCTTC | 1 cut(s) | 465 |
| EarI | CTCTTC | 1 cut(s) | 465 |
| EciI | GGCGGA | 1 cut(s) | 159 |
| Ecl136II | GAGCTC | 1 cut(s) | 1709 |
| Eco130I | CCWWGG | 2 cut(s) | 1229, 1821 |
| Eco147I | AGGCCT | 1 cut(s) | 2000 |
| Eco24I | GRGCYC | 2 cut(s) | 1280, 1711 |
| Eco31I | GGTCTC | 1 cut(s) | 1112 |
| Eco32I | GATATC | 2 cut(s) | 676, 2050 |
| Eco47I | GGWCC | 1 cut(s) | 1172 |
| Eco53kI | GAGCTC | 1 cut(s) | 1709 |
| Eco57I | CTGAAG | 2 cut(s) | 294, 371 |
| Eco81I | CCTNAGG | 1 cut(s) | 904 |
| Eco88I | CYCGRG | 2 cut(s) | 1273, 1994 |
| EcoICRI | GAGCTC | 1 cut(s) | 1709 |
| EcoO109I | RGGNCCY | 3 cut(s) | 40, 1172, 1715 |
| EcoRI | GAATTC | 2 cut(s) | 165, 1003 |
| EcoRII | CCWGG | 4 cut(s) | 36, 42, 1381, 1481 |
| EcoRV | GATATC | 2 cut(s) | 676, 2050 |
| EcoT14I | CCWWGG | 2 cut(s) | 1229, 1821 |
| EcoT22I | ATGCAT | 1 cut(s) | 1071 |
| EcoT38I | GRGCYC | 2 cut(s) | 1280, 1711 |
| ErhI | CCWWGG | 2 cut(s) | 1229, 1821 |
| FaqI | GGGAC | 2 cut(s) | 1185, 1635 |
| FbaI | TGATCA | 1 cut(s) | 1720 |
| Fnu4HI | GCNGC | 3 cut(s) | 696, 774, 1454 |
| FokI | GGATG | 5 cut(s) | 341, 596, 921, 1103, 1793 |
| FriOI | GRGCYC | 2 cut(s) | 1280, 1711 |
| Fsp4HI | GCNGC | 3 cut(s) | 696, 774, 1454 |
| FspBI | CTAG | 2 cut(s) | 1260, 1440 |
| GluI | GCNGC | 3 cut(s) | 696, 774, 1454 |
| GsaI | CCCAGC | 1 cut(s) | 2127 |
| GsuI | CTGGAG | 1 cut(s) | 1365 |
| HaeIII | GGCC | 8 cut(s) | 41, 91, 530, 716, 1580, 1616, 1717, 2000 |
| HapII | CCGG | 3 cut(s) | 309, 623, 1854 |
| HgaI | GACGC | 2 cut(s) | 1445, 2063 |
| Hin1I | GRCGYC | 1 cut(s) | 2055 |
| HincII | GTYRAC | 2 cut(s) | 202, 1180 |
| HindII | GTYRAC | 2 cut(s) | 202, 1180 |
| HpaI | GTTAAC | 1 cut(s) | 1180 |
| HpaII | CCGG | 3 cut(s) | 309, 623, 1854 |
| HphI | GGTGA | 9 cut(s) | 161, 233, 423, 713, 1004, 1160, 1218, 1435, 1578 |
| Hpy166II | GTNNAC | 5 cut(s) | 202, 280, 1012, 1180, 1860 |
| Hpy188III | TCNNGA | 8 cut(s) | 656, 728, 790, 906, 1000, 1729, 1945, 2189 |
| Hpy8I | GTNNAC | 5 cut(s) | 202, 280, 1012, 1180, 1860 |
| Hpy99I | CGWCG | 1 cut(s) | 2057 |
| HpyAV | CCTTC | 6 cut(s) | 41, 514, 725, 983, 1480, 1960 |
| HpyCH4III | ACNGT | 6 cut(s) | 244, 259, 560, 1565, 1608, 1640 |
| HpyCH4IV | ACGT | 4 cut(s) | 391, 425, 984, 1648 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 300, 773, 1256, 1284, 2006, 2120 |
| HpyF3I | CTNAG | 7 cut(s) | 98, 497, 663, 904, 1086, 1203, 1323 |
| HpySE526I | ACGT | 4 cut(s) | 391, 425, 984, 1648 |
| Hsp92I | GRCGYC | 1 cut(s) | 2055 |
| Ksp22I | TGATCA | 1 cut(s) | 1720 |
| KspAI | GTTAAC | 1 cut(s) | 1180 |
| Kzo9I | GATC | 9 cut(s) | 191, 481, 874, 1051, 1153, 1386, 1720, 1725, 2179 |
| LmnI | GCTCC | 1 cut(s) | 1706 |
| Lsp1109I | GCAGC | 3 cut(s) | 682, 760, 1465 |
| LweI | GCATC | 5 cut(s) | 127, 1390, 1815, 1902, 2050 |
| MaeI | CTAG | 2 cut(s) | 1260, 1440 |
| MaeII | ACGT | 4 cut(s) | 391, 425, 984, 1648 |
| MaeIII | GTNAC | 7 cut(s) | 253, 895, 947, 1268, 1493, 1632, 1953 |
| MalI | GATC | 9 cut(s) | 193, 483, 876, 1053, 1155, 1388, 1722, 1727, 2181 |
| MboI | GATC | 9 cut(s) | 191, 481, 874, 1051, 1153, 1386, 1720, 1725, 2179 |
| MfeI | CAATTG | 1 cut(s) | 1626 |
| MflI | RGATCY | 2 cut(s) | 874, 1386 |
| MhlI | GDGCHC | 3 cut(s) | 431, 1280, 1711 |
| MluCI | AATT | 9 cut(s) | 165, 687, 804, 1003, 1057, 1626, 1698, 1739, 1789 |
| MlyI | GAGTC | 3 cut(s) | 61, 1265, 1444 |
| MmeI | TCCRAC | 1 cut(s) | 1502 |
| Mph1103I | ATGCAT | 1 cut(s) | 1071 |
| MroXI | GAANNNNTTC | 3 cut(s) | 391, 1189, 1876 |
| MseI | TTAA | 7 cut(s) | 360, 537, 642, 1179, 1445, 1788, 2202 |
| MspI | CCGG | 3 cut(s) | 309, 623, 1854 |
| MspR9I | CCNGG | 5 cut(s) | 38, 44, 1383, 1483, 1855 |
| MssI | GTTTAAAC | 1 cut(s) | 1446 |
| MunI | CAATTG | 1 cut(s) | 1626 |
| Mva1269I | GAATGC | 1 cut(s) | 1895 |
| MvaI | CCWGG | 4 cut(s) | 38, 44, 1383, 1483 |
| MvnI | CGCG | 2 cut(s) | 84, 1843 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 300, 773, 1256, 1284, 2006, 2120 |
| NciI | CCSGG | 1 cut(s) | 1855 |
| NdeII | GATC | 9 cut(s) | 191, 481, 874, 1051, 1153, 1386, 1720, 1725, 2179 |
| NlaIV | GGNNCC | 3 cut(s) | 654, 750, 1173 |
| NmuCI | GTSAC | 2 cut(s) | 253, 1268 |
| NsiI | ATGCAT | 1 cut(s) | 1071 |
| NspI | RCATGY | 1 cut(s) | 372 |
| NspV | TTCGAA | 1 cut(s) | 1129 |
| PceI | AGGCCT | 1 cut(s) | 2000 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1943 |
| PctI | GAATGC | 1 cut(s) | 1895 |
| PdmI | GAANNNNTTC | 3 cut(s) | 391, 1189, 1876 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 43 |
| PkrI | GCNGC | 3 cut(s) | 697, 775, 1455 |
| PleI | GAGTC | 3 cut(s) | 61, 1265, 1443 |
| PmeI | GTTTAAAC | 1 cut(s) | 1446 |
| PpsI | GAGTC | 3 cut(s) | 61, 1265, 1443 |
| PpuMI | RGGWCCY | 1 cut(s) | 1172 |
| PshBI | ATTAAT | 1 cut(s) | 1788 |
| Psp124BI | GAGCTC | 1 cut(s) | 1711 |
| Psp1406I | AACGTT | 2 cut(s) | 391, 984 |
| Psp5II | RGGWCCY | 1 cut(s) | 1172 |
| Psp6I | CCWGG | 4 cut(s) | 36, 42, 1381, 1481 |
| PspFI | CCCAGC | 1 cut(s) | 2123 |
| PspGI | CCWGG | 4 cut(s) | 36, 42, 1381, 1481 |
| PspN4I | GGNNCC | 3 cut(s) | 654, 750, 1173 |
| PspPI | GGNCC | 3 cut(s) | 40, 1172, 1715 |
| PspPPI | RGGWCCY | 1 cut(s) | 1172 |
| PstNI | CAGNNNCTG | 1 cut(s) | 43 |
| PsuI | RGATCY | 2 cut(s) | 874, 1386 |
| RsaI | GTAC | 3 cut(s) | 96, 241, 1861 |
| RsaNI | GTAC | 3 cut(s) | 95, 240, 1860 |
| SacI | GAGCTC | 1 cut(s) | 1711 |
| SaqAI | TTAA | 7 cut(s) | 360, 537, 642, 1179, 1445, 1788, 2202 |
| SatI | GCNGC | 3 cut(s) | 696, 774, 1454 |
| Sau3AI | GATC | 9 cut(s) | 191, 481, 874, 1051, 1153, 1386, 1720, 1725, 2179 |
| Sau96I | GGNCC | 3 cut(s) | 40, 1172, 1715 |
| ScaI | AGTACT | 2 cut(s) | 96, 241 |
| SchI | GAGTC | 3 cut(s) | 61, 1265, 1444 |
| ScrFI | CCNGG | 5 cut(s) | 38, 44, 1383, 1483, 1855 |
| SduI | GDGCHC | 3 cut(s) | 431, 1280, 1711 |
| SfaNI | GCATC | 5 cut(s) | 127, 1390, 1815, 1902, 2050 |
| SfuI | TTCGAA | 1 cut(s) | 1129 |
| SinI | GGWCC | 1 cut(s) | 1172 |
| SmlI | CTYRAG | 1 cut(s) | 1710 |
| SmoI | CTYRAG | 1 cut(s) | 1710 |
| Sse9I | AATT | 9 cut(s) | 165, 687, 804, 1003, 1057, 1626, 1698, 1739, 1789 |
| SseBI | AGGCCT | 1 cut(s) | 2000 |
| SsiI | CCGC | 4 cut(s) | 84, 170, 1287, 1841 |
| SspI | AATATT | 2 cut(s) | 343, 535 |
| SspMI | CTAG | 2 cut(s) | 1260, 1440 |
| SstI | GAGCTC | 1 cut(s) | 1711 |
| StuI | AGGCCT | 1 cut(s) | 2000 |
| StyD4I | CCNGG | 5 cut(s) | 36, 42, 1381, 1481, 1853 |
| StyI | CCWWGG | 2 cut(s) | 1229, 1821 |
| TaaI | ACNGT | 6 cut(s) | 244, 259, 560, 1565, 1608, 1640 |
| TaiI | ACGT | 4 cut(s) | 394, 428, 987, 1651 |
| TaqI | TCGA | 3 cut(s) | 590, 1129, 2052 |
| TaqII | GACCGA | 1 cut(s) | 809 |
| TasI | AATT | 9 cut(s) | 165, 687, 804, 1003, 1057, 1626, 1698, 1739, 1789 |
| TatI | WGTACW | 3 cut(s) | 94, 239, 1859 |
| Tru1I | TTAA | 7 cut(s) | 360, 537, 642, 1179, 1445, 1788, 2202 |
| Tru9I | TTAA | 7 cut(s) | 360, 537, 642, 1179, 1445, 1788, 2202 |
| TscAI | CASTG | 6 cut(s) | 301, 354, 1169, 1252, 1425, 1645 |
| TseFI | GTSAC | 2 cut(s) | 253, 1268 |
| TseI | GCWGC | 3 cut(s) | 695, 773, 1453 |
| Tsp45I | GTSAC | 2 cut(s) | 253, 1268 |
| TspGWI | ACGGA | 1 cut(s) | 1197 |
| TspRI | CASTG | 6 cut(s) | 301, 354, 1169, 1252, 1425, 1645 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 43 |
| VpaK11BI | GGWCC | 1 cut(s) | 1172 |
| VspI | ATTAAT | 1 cut(s) | 1788 |
| XapI | RAATTY | 3 cut(s) | 165, 1003, 1057 |
| XceI | RCATGY | 1 cut(s) | 372 |
| XmnI | GAANNNNTTC | 3 cut(s) | 391, 1189, 1876 |
| XspI | CTAG | 2 cut(s) | 1260, 1440 |
| ZrmI | AGTACT | 2 cut(s) | 96, 241 |
| Zsp2I | ATGCAT | 1 cut(s) | 1071 |