Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0012826

Physical Location & Seq

Genomic Coordinates Forward (+)

1769421 .. 1771015

Gene Structure 1595 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGGCCTAGTGGAGCCCAAAAACCTCTCAAGATTGTTCATTGTTGACACCGTTGATTTTAGAATCAGAATCCATAATCTAATCCAACGGATAAAATTTGAGGAGTCACGATCTGCCACTCAGAAGCCGCCAGGTAGGCATAAAAACAATCTCCCGTCCGGAGATCTCAACCCGCCTCAAAATTGCATCGCCCACCAAGCACCAAATTCTCTACACTCTTCCTCCTTCCCGTCAACGGAGATCTCGCCGGTGCTCGGATTGACTGCGATTCGATCCGCCTCACTTCTTCTATGTGAAGAGATGGTAAGTGGGTTCGGGGAATCAATGAGTAGGTCGTCCCAAGGGCCTTCATTCTCCGGCAGTAGCAATAACAACAGTGACGCTGGTGACTTCGAATGCAATATCTGCTTTGACTTGGCCCAAGACCCAATTGTGACCCTATGCGGCCATCTCTTCTGCTGGCCTTGCCTTTATAAGTGGCTCCACATTCACTCCCACTCTCAGGAATGCCCTGTTTGCAAAGCGCTCATAAAGGAGGAGAGTTTGGTTCCCTTATACGGAAGGGGGAAGACATCAACCGACCCAAGATCGAAGTCAATTCCTGGTATTAATATCCCAAACCGTCCAGCAGGACAAAGACCTGAAACTGCCCCTCCACCAGAACAGAACCATTTTGCCCACCGTGGATTTGGGTTCATGGGAGGGATGGGAGGTTTGGGCGGGTTTGCACCAGTTGCAACCACAAGGTTTGGGAATTTCACATTTTCTGCAGCCATTGGTGGCTTTATCCCGTCCCTATTCAATTTTCCGCTACATGGGTTTCCTGAGGCCGCCATGTTCAGTGCAAGTGCTGGATTACCTCATGGGTTCTCAAATACATTTCATGGCGGACATGCAAATAGGCACCATCTGCACAGGGGTACAGGTCAGGGACAGCAAGATCATAGACTGAAGGTGTTGTGTATGATTGTTATTATTTCAGTATTTCTTGCTCTCGCTTGGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006511 GO:0006515 GO:0006807 GO:0006928 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0016020 GO:0016477 GO:0016567 GO:0016740 GO:0018996 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030054 GO:0030154 GO:0030163 GO:0031984 GO:0032446 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034976 GO:0035966 GO:0035967 GO:0036211 GO:0036503 GO:0036513 GO:0040011 GO:0040039 GO:0042175 GO:0042221 GO:0042303 GO:0042692 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043292 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044449 GO:0044464 GO:0048468 GO:0048856 GO:0048869 GO:0048870 GO:0050896 GO:0051146 GO:0051179 GO:0051603 GO:0051674 GO:0051716 GO:0051788 GO:0055001 GO:0055002 GO:0055120 GO:0061061 GO:0061630 GO:0061659 GO:0070647 GO:0070887 GO:0071218 GO:0071310 GO:0071704 GO:0071712 GO:0098796 GO:0098827 GO:0099080 GO:0099081 GO:0099512 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

zf-C3HC4 zf-C3HC4_3

Protein Analysis

336

Amino Acids

36.43

Weight (kDa)

8.56

Isoelectric Point (pI)

53.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	131 - 178	8e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	132 - 173	1.4e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_2	PF13639	132 - 174	3.9e-08	Ring finger domain
zf-RING_5	PF14634	132 - 174	2.3e-07	zinc-RING finger domain
zf-C3HC4	PF00097	133 - 173	1.1e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	133 - 171	3.7e-07	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0012826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19310
fragaria_vesca	FvH4_2g40351 FvH4_2g40351 FvH4_2g40351
malus_domestica	MD08G1036700.v1.1
prunus_persica	Prupe.1G384000_v2.0.a1
pyrus_communis	pycom08g02930 pycom15g02870
rosa_chinensis	RchiOBHm_Chr6g0300391
rosa_laevigata	RLG00000011342
rosa_multiflora	Rmu_sc0001670.1_g000013
rosa_roxburghii	Rroxscaffold_7G00167840
rosa_rugosa	Rorug06G0295600
rosa_samantha	Rh6AG408300 Rh6BG415600 Rh6CG423000 Rh6DG408600
rosa_wichuraiana	Rw6G035710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	474
AccB1I	GGYRCC	1 cut(s)	903
AccIII	TCCGGA	1 cut(s)	158
AciI	CCGC	8 cut(s)	128, 173, 276, 444, 720, 809, 831, 888
AclWI	GGATC	1 cut(s)	267
AcoI	YGGCCR	1 cut(s)	445
AcsI	RAATTY	3 cut(s)	95, 205, 754
AcuI	CTGAAG	1 cut(s)	971
AfaI	GTAC	1 cut(s)	922
AfeI	AGCGCT	1 cut(s)	525
AfiI	CCNNNNNNNGG	5 cut(s)	235, 254, 502, 557, 815
AgsI	TTSAA	1 cut(s)	802
AjnI	CCWGG	2 cut(s)	130, 601
Alw21I	GWGCWC	1 cut(s)	255
AlwI	GGATC	1 cut(s)	267
Aor13HI	TCCGGA	1 cut(s)	158
Aor51HI	AGCGCT	1 cut(s)	525
AoxI	GGCC	6 cut(s)	4, 344, 417, 445, 461, 828
ApeKI	GCWGC	1 cut(s)	770
ApoI	RAATTY	3 cut(s)	95, 205, 754
AseI	ATTAAT	1 cut(s)	609
AspLEI	GCGC	1 cut(s)	526
AspS9I	GGNCC	3 cut(s)	4, 344, 418
AsuHPI	GGTGA	1 cut(s)	398
AsuII	TTCGAA	1 cut(s)	393
AxyI	CCTNAGG	1 cut(s)	825
BanI	GGYRCC	1 cut(s)	903
BanII	GRGCYC	1 cut(s)	18
BbsI	GAAGAC	1 cut(s)	575
Bbv12I	GWGCWC	1 cut(s)	255
BbvI	GCAGC	1 cut(s)	782
BccI	CCATC	4 cut(s)	295, 456, 700, 915
BciT130I	CCWGG	2 cut(s)	132, 603
BfaI	CTAG	1 cut(s)	8
BfmI	CTRYAG	1 cut(s)	768
BfoI	RGCGCY	1 cut(s)	527
BglI	GCCNNNNNGGC	1 cut(s)	136
BglII	AGATCT	2 cut(s)	163, 240
BisI	GCNGC	4 cut(s)	128, 445, 771, 831
BlsI	GCNGC	4 cut(s)	129, 446, 772, 832
Bme1390I	CCNGG	2 cut(s)	132, 603
BmgT120I	GGNCC	3 cut(s)	4, 344, 418
BmiI	GGNNCC	4 cut(s)	15, 482, 549, 905
BmrFI	CCNGG	2 cut(s)	132, 603
BmsI	GCATC	1 cut(s)	195
BpiI	GAAGAC	1 cut(s)	575
Bpu14I	TTCGAA	1 cut(s)	393
BpuEI	CTTGAG	1 cut(s)	13
BsaJI	CCNNGG	2 cut(s)	340, 682
BsaWI	WCCGGW	1 cut(s)	158
BsaXI	ACNNNNNCTCC	6 cut(s)	206, 236, 476, 506, 637, 667
Bsc4I	CCNNNNNNNGG	5 cut(s)	235, 254, 502, 557, 815
Bse118I	RCCGGY	1 cut(s)	247
Bse1I	ACTGG	1 cut(s)	731
Bse21I	CCTNAGG	1 cut(s)	825
BseAI	TCCGGA	1 cut(s)	158
BseBI	CCWGG	2 cut(s)	132, 603
BseDI	CCNNGG	2 cut(s)	340, 682
BseGI	GGATG	1 cut(s)	711
BseLI	CCNNNNNNNGG	5 cut(s)	235, 254, 502, 557, 815
BseMII	CTCAG	3 cut(s)	134, 515, 816
BseNI	ACTGG	1 cut(s)	731
BseRI	GAGGAG	2 cut(s)	116, 551
BseXI	GCAGC	1 cut(s)	782
BsgI	GTGCAG	1 cut(s)	896
BshFI	GGCC	6 cut(s)	6, 346, 419, 447, 463, 830
BshNI	GGYRCC	1 cut(s)	903
BsiHKAI	GWGCWC	1 cut(s)	255
BsiSI	CCGG	3 cut(s)	159, 248, 357
BslFI	GGGAC	3 cut(s)	322, 778, 945
BslI	CCNNNNNNNGG	5 cut(s)	235, 254, 502, 557, 815
BsmFI	GGGAC	3 cut(s)	322, 778, 945
BsmI	GAATGC	2 cut(s)	401, 512
BsnI	GGCC	6 cut(s)	6, 346, 419, 447, 463, 830
Bsp119I	TTCGAA	1 cut(s)	393
Bsp1286I	GDGCHC	2 cut(s)	18, 255
Bsp13I	TCCGGA	1 cut(s)	158
Bsp143I	GATC	6 cut(s)	110, 163, 240, 272, 587, 940
BspACI	CCGC	8 cut(s)	128, 173, 276, 444, 720, 809, 831, 888
BspANI	GGCC	6 cut(s)	6, 346, 419, 447, 463, 830
BspCNI	CTCAG	3 cut(s)	133, 514, 817
BspEI	TCCGGA	1 cut(s)	158
BspLI	GGNNCC	4 cut(s)	15, 482, 549, 905
BspMAI	CTGCAG	1 cut(s)	772
BspPI	GGATC	1 cut(s)	267
BspT104I	TTCGAA	1 cut(s)	393
BspT107I	GGYRCC	1 cut(s)	903
BsrFI	RCCGGY	1 cut(s)	247
BsrI	ACTGG	1 cut(s)	731
BssAI	RCCGGY	1 cut(s)	247
BssECI	CCNNGG	2 cut(s)	340, 682
BssMI	GATC	6 cut(s)	110, 163, 240, 272, 587, 940
BssT1I	CCWWGG	1 cut(s)	340
Bst2UI	CCWGG	2 cut(s)	132, 603
Bst4CI	ACNGT	4 cut(s)	52, 377, 623, 683
Bst6I	CTCTTC	3 cut(s)	223, 291, 458
BstAPI	GCANNNNNTGC	3 cut(s)	405, 734, 910
BstBI	TTCGAA	1 cut(s)	393
BstC8I	GCNNGC	1 cut(s)	461
BstDEI	CTNAG	3 cut(s)	120, 501, 825
BstDSI	CCRYGG	1 cut(s)	682
BstF5I	GGATG	1 cut(s)	711
BstH2I	RGCGCY	1 cut(s)	527
BstHHI	GCGC	1 cut(s)	526
BstKTI	GATC	6 cut(s)	113, 166, 243, 275, 590, 943
BstMBI	GATC	6 cut(s)	110, 163, 240, 272, 587, 940
BstMWI	GCNNNNNNNGC	7 cut(s)	136, 197, 405, 465, 516, 734, 910
BstNI	CCWGG	2 cut(s)	132, 603
BstNSI	RCATGY	1 cut(s)	896
BstSCI	CCNGG	2 cut(s)	130, 601
BstSFI	CTRYAG	1 cut(s)	768
BstV1I	GCAGC	1 cut(s)	782
BstV2I	GAAGAC	1 cut(s)	575
BstX2I	RGATCY	2 cut(s)	163, 240
BstYI	RGATCY	2 cut(s)	163, 240
Bsu36I	CCTNAGG	1 cut(s)	825
BsuRI	GGCC	6 cut(s)	6, 346, 419, 447, 463, 830
BtgI	CCRYGG	1 cut(s)	682
BtgZI	GCGATG	1 cut(s)	172
BtsCI	GGATG	1 cut(s)	711
BtsIMutI	CAGTG	2 cut(s)	382, 847
Cac8I	GCNNGC	1 cut(s)	461
CfoI	GCGC	1 cut(s)	526
Cfr10I	RCCGGY	1 cut(s)	247
Cfr13I	GGNCC	3 cut(s)	4, 344, 418
CseI	GACGC	1 cut(s)	389
Csp6I	GTAC	1 cut(s)	921
CspCI	CAANNNNNGTGG	2 cut(s)	730, 765
CviAII	CATG	6 cut(s)	697, 815, 835, 863, 884, 893
CviQI	GTAC	1 cut(s)	921
DdeI	CTNAG	3 cut(s)	120, 501, 825
DpnI	GATC	6 cut(s)	112, 165, 242, 274, 589, 942
DpnII	GATC	6 cut(s)	110, 163, 240, 272, 587, 940
EaeI	YGGCCR	1 cut(s)	445
Eam1104I	CTCTTC	3 cut(s)	223, 291, 458
EarI	CTCTTC	3 cut(s)	223, 291, 458
EciI	GGCGGA	2 cut(s)	265, 903
Eco130I	CCWWGG	1 cut(s)	340
Eco24I	GRGCYC	1 cut(s)	18
Eco47III	AGCGCT	1 cut(s)	525
Eco57I	CTGAAG	1 cut(s)	971
Eco81I	CCTNAGG	1 cut(s)	825
EcoO109I	RGGNCCY	1 cut(s)	344
EcoRII	CCWGG	2 cut(s)	130, 601
EcoT14I	CCWWGG	1 cut(s)	340
EcoT38I	GRGCYC	1 cut(s)	18
ErhI	CCWWGG	1 cut(s)	340
FaeI	CATG	6 cut(s)	700, 818, 838, 866, 887, 896
FaqI	GGGAC	3 cut(s)	322, 778, 945
FatI	CATG	6 cut(s)	696, 814, 834, 862, 883, 892
FauI	CCCGC	2 cut(s)	180, 713
Fnu4HI	GCNGC	4 cut(s)	128, 445, 771, 831
FokI	GGATG	1 cut(s)	718
FriOI	GRGCYC	1 cut(s)	18
Fsp4HI	GCNGC	4 cut(s)	128, 445, 771, 831
FspBI	CTAG	1 cut(s)	8
GlaI	GCGC	1 cut(s)	525
GluI	GCNGC	4 cut(s)	128, 445, 771, 831
HaeII	RGCGCY	1 cut(s)	527
HaeIII	GGCC	6 cut(s)	6, 346, 419, 447, 463, 830
HapII	CCGG	3 cut(s)	159, 248, 357
HgaI	GACGC	1 cut(s)	389
HhaI	GCGC	1 cut(s)	526
Hin1II	CATG	6 cut(s)	700, 818, 838, 866, 887, 896
Hin6I	GCGC	1 cut(s)	524
HinP1I	GCGC	1 cut(s)	524
HincII	GTYRAC	2 cut(s)	46, 234
HindII	GTYRAC	2 cut(s)	46, 234
HinfI	GANTC	5 cut(s)	63, 69, 104, 268, 320
HpaII	CCGG	3 cut(s)	159, 248, 357
HphI	GGTGA	1 cut(s)	398
Hpy166II	GTNNAC	2 cut(s)	46, 234
Hpy188I	TCNGA	3 cut(s)	68, 123, 257
Hpy188III	TCNNGA	5 cut(s)	30, 108, 159, 503, 824
Hpy8I	GTNNAC	2 cut(s)	46, 234
HpyAV	CCTTC	4 cut(s)	235, 357, 555, 946
HpyCH4III	ACNGT	4 cut(s)	52, 377, 623, 683
HpyCH4V	TGCA	9 cut(s)	186, 399, 519, 728, 737, 770, 845, 896, 913
HpyF10VI	GCNNNNNNNGC	7 cut(s)	136, 197, 405, 465, 516, 734, 910
HpyF3I	CTNAG	3 cut(s)	120, 501, 825
Hsp92II	CATG	6 cut(s)	700, 818, 838, 866, 887, 896
HspAI	GCGC	1 cut(s)	524
Kpn2I	TCCGGA	1 cut(s)	158
Kzo9I	GATC	6 cut(s)	110, 163, 240, 272, 587, 940
LmnI	GCTCC	2 cut(s)	13, 486
Lsp1109I	GCAGC	1 cut(s)	782
LweI	GCATC	1 cut(s)	195
MaeI	CTAG	1 cut(s)	8
MaeIII	GTNAC	4 cut(s)	105, 377, 386, 433
MalI	GATC	6 cut(s)	112, 165, 242, 274, 589, 942
MboI	GATC	6 cut(s)	110, 163, 240, 272, 587, 940
MboII	GAAGA	5 cut(s)	210, 278, 308, 445, 580
MfeI	CAATTG	1 cut(s)	429
MflI	RGATCY	2 cut(s)	163, 240
MhlI	GDGCHC	2 cut(s)	18, 255
MluCI	AATT	7 cut(s)	95, 181, 205, 429, 597, 754, 802
MlyI	GAGTC	1 cut(s)	113
MmeI	TCCRAC	1 cut(s)	109
MroI	TCCGGA	1 cut(s)	158
MseI	TTAA	1 cut(s)	609
MspI	CCGG	3 cut(s)	159, 248, 357
MspR9I	CCNGG	2 cut(s)	132, 603
MunI	CAATTG	1 cut(s)	429
Mva1269I	GAATGC	2 cut(s)	401, 512
MvaI	CCWGG	2 cut(s)	132, 603
MwoI	GCNNNNNNNGC	7 cut(s)	136, 197, 405, 465, 516, 734, 910
NdeII	GATC	6 cut(s)	110, 163, 240, 272, 587, 940
NlaIII	CATG	6 cut(s)	700, 818, 838, 866, 887, 896
NlaIV	GGNNCC	4 cut(s)	15, 482, 549, 905
NmuCI	GTSAC	4 cut(s)	105, 377, 386, 433
NspI	RCATGY	1 cut(s)	896
NspV	TTCGAA	1 cut(s)	393
PctI	GAATGC	2 cut(s)	401, 512
PfeI	GAWTC	4 cut(s)	63, 69, 268, 320
PkrI	GCNGC	4 cut(s)	129, 446, 772, 832
PleI	GAGTC	1 cut(s)	112
PpsI	GAGTC	1 cut(s)	112
PshBI	ATTAAT	1 cut(s)	609
PsiI	TTATAA	1 cut(s)	474
Psp6I	CCWGG	2 cut(s)	130, 601
PspGI	CCWGG	2 cut(s)	130, 601
PspN4I	GGNNCC	4 cut(s)	15, 482, 549, 905
PspPI	GGNCC	3 cut(s)	4, 344, 418
PstI	CTGCAG	1 cut(s)	772
PsuI	RGATCY	2 cut(s)	163, 240
RsaI	GTAC	1 cut(s)	922
RsaNI	GTAC	1 cut(s)	921
SaqAI	TTAA	1 cut(s)	609
SatI	GCNGC	4 cut(s)	128, 445, 771, 831
Sau3AI	GATC	6 cut(s)	110, 163, 240, 272, 587, 940
Sau96I	GGNCC	3 cut(s)	4, 344, 418
SchI	GAGTC	1 cut(s)	113
ScrFI	CCNGG	2 cut(s)	132, 603
SduI	GDGCHC	2 cut(s)	18, 255
SetI	ASST	9 cut(s)	27, 136, 335, 643, 715, 749, 862, 928, 957
SfaNI	GCATC	1 cut(s)	195
SfcI	CTRYAG	1 cut(s)	768
SfuI	TTCGAA	1 cut(s)	393
SgrAI	CRCCGGYG	1 cut(s)	247
SmlI	CTYRAG	1 cut(s)	28
SmoI	CTYRAG	1 cut(s)	28
Sse9I	AATT	7 cut(s)	95, 181, 205, 429, 597, 754, 802
SsiI	CCGC	8 cut(s)	128, 173, 276, 444, 720, 809, 831, 888
SspMI	CTAG	1 cut(s)	8
StyD4I	CCNGG	2 cut(s)	130, 601
StyI	CCWWGG	1 cut(s)	340
TaaI	ACNGT	4 cut(s)	52, 377, 623, 683
TaqI	TCGA	3 cut(s)	271, 393, 590
TasI	AATT	7 cut(s)	95, 181, 205, 429, 597, 754, 802
TauI	GCSGC	3 cut(s)	130, 447, 833
TfiI	GAWTC	4 cut(s)	63, 69, 268, 320
Tru1I	TTAA	1 cut(s)	609
Tru9I	TTAA	1 cut(s)	609
TscAI	CASTG	2 cut(s)	382, 847
TseFI	GTSAC	4 cut(s)	105, 377, 386, 433
TseI	GCWGC	1 cut(s)	770
Tsp45I	GTSAC	4 cut(s)	105, 377, 386, 433
TspDTI	ATGAA	4 cut(s)	28, 339, 685, 872
TspGWI	ACGGA	3 cut(s)	103, 251, 573
TspRI	CASTG	2 cut(s)	382, 847
VspI	ATTAAT	1 cut(s)	609
XapI	RAATTY	3 cut(s)	95, 205, 754
XceI	RCATGY	1 cut(s)	896
XcmI	CCANNNNNNNNNTGG	1 cut(s)	686
XspI	CTAG	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.