pycom15g03920

Enhancer of rudimentary homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0015988
Physical Location & Seq
Forward (+)
2393094 .. 2395775
2682 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g03920.3

Sequence Viewer

Length: 810 bp
ATGTTCACAAGTCACGATCCTCGTTCTCCCATTGACTTGCGTTGGCCCCAAAGTCTTCCTTGCGTTACGGCAAAAAGTCTTTTTGGTCAAATTAATTTAAAATCAATAGAAGAATTATCACTGTCAATTATTTTGGTCCTTATGAAAAACTTTTATTTTGTCATTTTGATTCTTGTGAAAAATTTCCAGTCTTTTTCTTCTTTTCCAAACAAGCATTCCAGTCTTTCGGTTTTTCCTTTATTCCCTACTTTCCACGACTACATACAACAACCCAAGAAAAAAGTATACAAATCCAACGGTCTGGGTTCTCCATCGAAAGACCTCCACAACCAAGATCGTAATTGTCTACTTTACCCAACTCTGCATGTCCCTTACCTAGTGGCCCTGCTCAAAGTCTTCGTCTTCAACTCTCTCACTCCCTCTCTTCCTCCGGCTGTCTCGTCTTCTCGACGCAACCCTAATTTTGCTGCAAACTTTTGGGTCGTCACTGTCAGCTCTCACATGGCGAACAAGCACACGATCATTCTAATGCAAACTTCTCACAACAAAGCAAGTAGAACCTTTATGGACTATGATTCAATAAGTCAAGCAATGGATGGTATATGTGGACTGTATGAGAGGAAGCTGAGGGAGTTAAATCCAGCAATTAGAGATATCTCTTATGACATCGGAGATCTCTACAATTTCATTGATGGCCTTGCTGACATGAGTGCTTTAGTATATGATCATTCGATTCAGGCATATCTCCCCTATGACCGACAGTGGATTAAACAACGGACACTTCGACATCTGCAAAAACTGGCGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ER

Protein Analysis

270

Amino Acids

30.9

Weight (kDa)

9.42

Isoelectric Point (pI)

54.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015988)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10810
fragaria_vesca FvH4_2g41220 FvH4_2g41220
malus_domestica MD08G1054800.v1.1 MD15G1042200.v1.1
prunus_persica Prupe.1G395400_v2.0.a1 Prupe.1G395400_v2.0.a1
pyrus_communis pycom15g03920
rosa_chinensis RchiOBHm_Chr6g0299291
rosa_laevigata RLG00000011445
rosa_multiflora Rmu_sc0001434.1_g000003
rosa_roxburghii Rroxscaffold_7G00168820
rosa_samantha Rh6AG398400 Rh6BG406800
rosa_wichuraiana Rw6G034870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 285, 346
AclWI GGATC 1 cut(s) 11
AcsI RAATTY 1 cut(s) 181
AgsI TTSAA 2 cut(s) 406, 579
AjuI GAANNNNNNNTTGG 2 cut(s) 199, 231
AluBI AGCT 2 cut(s) 495, 625
AluI AGCT 2 cut(s) 495, 625
Alw26I GTCTC 1 cut(s) 442
AlwI GGATC 1 cut(s) 11
AoxI GGCC 3 cut(s) 44, 381, 694
ApeKI GCWGC 1 cut(s) 467
ApoI RAATTY 1 cut(s) 181
ArsI GACNNNNNNTTYG 2 cut(s) 384, 416
AseI ATTAAT 1 cut(s) 93
Asp700I GAANNNNTTC 1 cut(s) 182
AspLEI GCGC 1 cut(s) 805
AspS9I GGNCC 3 cut(s) 45, 136, 382
AvaII GGWCC 1 cut(s) 136
BbsI GAAGAC 4 cut(s) 47, 388, 394, 435
BbvCI CCTCAGC 1 cut(s) 626
BbvI GCAGC 1 cut(s) 454
BccI CCATC 3 cut(s) 319, 590, 686
BceAI ACGGC 1 cut(s) 84
BclI TGATCA 1 cut(s) 724
BcoDI GTCTC 1 cut(s) 442
BfaI CTAG 1 cut(s) 377
BglII AGATCT 1 cut(s) 673
BisI GCNGC 1 cut(s) 468
BlsI GCNGC 1 cut(s) 469
Bme18I GGWCC 1 cut(s) 136
BmgT120I GGNCC 3 cut(s) 45, 136, 382
BmiI GGNNCC 1 cut(s) 47
BpiI GAAGAC 4 cut(s) 47, 388, 394, 435
Bpu10I CCTNAGC 1 cut(s) 626
Bse1I ACTGG 3 cut(s) 187, 219, 804
Bse3DI GCAATG 1 cut(s) 597
BseGI GGATG 1 cut(s) 601
BseMI GCAATG 1 cut(s) 597
BseMII CTCAG 1 cut(s) 617
BseNI ACTGG 3 cut(s) 187, 219, 804
BseXI GCAGC 1 cut(s) 454
BshFI GGCC 3 cut(s) 46, 383, 696
BsiSI CCGG 1 cut(s) 431
BslFI GGGAC 1 cut(s) 353
BsmAI GTCTC 1 cut(s) 442
BsmFI GGGAC 1 cut(s) 353
BsmI GAATGC 1 cut(s) 214
BsnI GGCC 3 cut(s) 46, 383, 696
Bsp143I GATC 5 cut(s) 16, 334, 519, 673, 724
BspANI GGCC 3 cut(s) 46, 383, 696
BspCNI CTCAG 1 cut(s) 618
BspLI GGNNCC 1 cut(s) 47
BspPI GGATC 1 cut(s) 11
BsrDI GCAATG 1 cut(s) 597
BsrI ACTGG 3 cut(s) 187, 219, 804
BssMI GATC 5 cut(s) 16, 334, 519, 673, 724
BssNAI GTATAC 1 cut(s) 286
Bst1107I GTATAC 1 cut(s) 286
Bst4CI ACNGT 5 cut(s) 123, 299, 490, 612, 762
Bst6I CTCTTC 1 cut(s) 429
BstDEI CTNAG 1 cut(s) 626
BstF5I GGATG 1 cut(s) 601
BstHHI GCGC 1 cut(s) 805
BstKTI GATC 5 cut(s) 19, 337, 522, 676, 727
BstMAI GTCTC 1 cut(s) 442
BstMBI GATC 5 cut(s) 16, 334, 519, 673, 724
BstNSI RCATGY 1 cut(s) 368
BstV1I GCAGC 1 cut(s) 454
BstV2I GAAGAC 4 cut(s) 47, 388, 394, 435
BstX2I RGATCY 1 cut(s) 673
BstXI CCANNNNNNTGG 1 cut(s) 301
BstYI RGATCY 1 cut(s) 673
BstZ17I GTATAC 1 cut(s) 286
BsuRI GGCC 3 cut(s) 46, 383, 696
BtsCI GGATG 1 cut(s) 601
BtsIMutI CAGTG 3 cut(s) 119, 486, 767
CfoI GCGC 1 cut(s) 805
Cfr13I GGNCC 3 cut(s) 45, 136, 382
CseI GACGC 1 cut(s) 459
CviAII CATG 3 cut(s) 365, 502, 706
CviJI RGCY 6 cut(s) 46, 383, 434, 495, 625, 696
CviKI_1 RGCY 6 cut(s) 46, 383, 434, 495, 625, 696
DdeI CTNAG 1 cut(s) 626
DpnI GATC 5 cut(s) 18, 336, 521, 675, 726
DpnII GATC 5 cut(s) 16, 334, 519, 673, 724
DraI TTTAAA 1 cut(s) 99
Eam1104I CTCTTC 1 cut(s) 429
EarI CTCTTC 1 cut(s) 429
Eco32I GATATC 1 cut(s) 655
Eco47I GGWCC 1 cut(s) 136
EcoRV GATATC 1 cut(s) 655
FaeI CATG 3 cut(s) 368, 505, 709
FalI AAGNNNNNCTT 2 cut(s) 43, 75
FaqI GGGAC 1 cut(s) 353
FatI CATG 3 cut(s) 364, 501, 705
FbaI TGATCA 1 cut(s) 724
FblI GTMKAC 2 cut(s) 285, 346
Fnu4HI GCNGC 1 cut(s) 468
FokI GGATG 1 cut(s) 608
Fsp4HI GCNGC 1 cut(s) 468
FspBI CTAG 1 cut(s) 377
GlaI GCGC 1 cut(s) 804
GluI GCNGC 1 cut(s) 468
HaeIII GGCC 3 cut(s) 46, 383, 696
HapII CCGG 1 cut(s) 431
HgaI GACGC 1 cut(s) 459
HhaI GCGC 1 cut(s) 805
Hin1II CATG 3 cut(s) 368, 505, 709
Hin6I GCGC 1 cut(s) 803
HinP1I GCGC 1 cut(s) 803
HinfI GANTC 3 cut(s) 169, 575, 733
HpaII CCGG 1 cut(s) 431
Hpy166II GTNNAC 4 cut(s) 6, 286, 347, 608
Hpy188I TCNGA 1 cut(s) 671
Hpy188III TCNNGA 2 cut(s) 14, 447
Hpy8I GTNNAC 4 cut(s) 6, 286, 347, 608
Hpy99I CGWCG 1 cut(s) 453
HpyCH4III ACNGT 5 cut(s) 123, 299, 490, 612, 762
HpyCH4V TGCA 4 cut(s) 364, 470, 532, 793
HpyF3I CTNAG 1 cut(s) 626
Hsp92II CATG 3 cut(s) 368, 505, 709
HspAI GCGC 1 cut(s) 803
Ksp22I TGATCA 1 cut(s) 724
Kzo9I GATC 5 cut(s) 16, 334, 519, 673, 724
LpnPI CCDG 8 cut(s) 200, 232, 287, 398, 444, 654, 722, 785
Lsp1109I GCAGC 1 cut(s) 454
MaeI CTAG 1 cut(s) 377
MaeIII GTNAC 3 cut(s) 11, 64, 484
MalI GATC 5 cut(s) 18, 336, 521, 675, 726
MboI GATC 5 cut(s) 16, 334, 519, 673, 724
MboII GAAGA 7 cut(s) 47, 122, 189, 388, 394, 416, 435
MflI RGATCY 1 cut(s) 673
MluCI AATT 9 cut(s) 90, 94, 113, 126, 181, 340, 460, 645, 682
MmeI TCCRAC 1 cut(s) 318
MnlI CCTC 6 cut(s) 30, 332, 430, 438, 612, 621
MroXI GAANNNNTTC 1 cut(s) 182
MseI TTAA 4 cut(s) 93, 98, 635, 768
MslI CAYNNNNRTG 1 cut(s) 527
MspI CCGG 1 cut(s) 431
Mva1269I GAATGC 1 cut(s) 214
NdeII GATC 5 cut(s) 16, 334, 519, 673, 724
NlaIII CATG 3 cut(s) 368, 505, 709
NlaIV GGNNCC 1 cut(s) 47
NmuCI GTSAC 2 cut(s) 11, 484
NspI RCATGY 1 cut(s) 368
PcsI WCGNNNNNNNCGW 1 cut(s) 781
PctI GAATGC 1 cut(s) 214
PdmI GAANNNNTTC 1 cut(s) 182
PfeI GAWTC 3 cut(s) 169, 575, 733
PkrI GCNGC 1 cut(s) 469
PshBI ATTAAT 1 cut(s) 93
PspN4I GGNNCC 1 cut(s) 47
PspPI GGNCC 3 cut(s) 45, 136, 382
PsuI RGATCY 1 cut(s) 673
RseI CAYNNNNRTG 1 cut(s) 527
SaqAI TTAA 4 cut(s) 93, 98, 635, 768
SatI GCNGC 1 cut(s) 468
Sau3AI GATC 5 cut(s) 16, 334, 519, 673, 724
Sau96I GGNCC 3 cut(s) 45, 136, 382
SetI ASST 5 cut(s) 324, 378, 497, 563, 627
SinI GGWCC 1 cut(s) 136
SmiMI CAYNNNNRTG 1 cut(s) 527
Sse9I AATT 9 cut(s) 90, 94, 113, 126, 181, 340, 460, 645, 682
SspMI CTAG 1 cut(s) 377
TaaI ACNGT 5 cut(s) 123, 299, 490, 612, 762
TaqI TCGA 4 cut(s) 314, 448, 731, 784
TaqII GACCGA 1 cut(s) 771
TasI AATT 9 cut(s) 90, 94, 113, 126, 181, 340, 460, 645, 682
TfiI GAWTC 3 cut(s) 169, 575, 733
Tru1I TTAA 4 cut(s) 93, 98, 635, 768
Tru9I TTAA 4 cut(s) 93, 98, 635, 768
TscAI CASTG 3 cut(s) 126, 493, 767
TseFI GTSAC 2 cut(s) 11, 484
TseI GCWGC 1 cut(s) 467
Tsp45I GTSAC 2 cut(s) 11, 484
TspDTI ATGAA 2 cut(s) 158, 676
TspGWI ACGGA 1 cut(s) 790
TspRI CASTG 3 cut(s) 126, 493, 767
VpaK11BI GGWCC 1 cut(s) 136
VspI ATTAAT 1 cut(s) 93
XapI RAATTY 1 cut(s) 181
XceI RCATGY 1 cut(s) 368
XmiI GTMKAC 2 cut(s) 285, 346
XmnI GAANNNNTTC 1 cut(s) 182
XspI CTAG 1 cut(s) 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.