pycom15g03950
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0002174
Physical Location & Seq
Reverse (-)
2405485 .. 2407971
2487 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1344 bp
ATGGGTTGCCAAACTGCGGCAGCGAATAGTGATCGGTCAAGGACGTATTGGACTCCAACGATGGAACGATACTTTATTGATCTTATGTTGGAGCAATTGCATAGAGGAGCTCGTGTTGGCCATACTTTCAACAAGCAGGCCTGGACCGAAATGCTCAGCGTGTTTAATGCACAATTTGGCTCTCATTATGACAAAGATGTCTTGAAAAGCCGGTATACGACTTTGTGGATGCAGTTCAATGATGTGAAAAATATTCTTGGTCAGAATGGGTTTTCTTGGGACGAAAGTCGTCAGATGGTGGTAGCTGATGATTACATATGGGATGCTTACATCAAGGTTCACCCGGATGCACGGCCTTACAAAACTAAACCGGTGTTGAATTTCAATGAATTATGCCTCATTTATGGCTATACAACTGCTGATGGAAGATACAGTCGATCAAGCCATGACGTAGATTTTGATGATGAAGTTCAAGGAGTAACCACGGGTGACGGAGTGGGCAGCCTTGCTCCTTCAAGTAGCGAGCGCCCAAGGACAGAATGGTCACTAGAAATGGACCAGTATTTCGTTGACATTATGCTGGAACAAGTATCAATTGGCAATAAGCCTGATAATGCATTCAACAAACAAGCCTGGACAGTTATGCTTGCCAAATTTAATGAAGAATTTGGACCTCAACATAGCTTACGAGTTTTAAGGCATCGATACAAGAAACTGTTGAAGTATTATAGTGATGCAACAATTTTGCTAAGACAGAAGGACTTTTCCTGGGATGAAACGCGACATATGATTGTAGCTGATGATGAGGTTTGGGATGCATATACAAAGGTACACCCTCATGCACGGACATATAAAACAAAAGCCTTGCCAAACTTATTTAGCATGTCCCTGTTATTTGGAACTGAATGCGATCTTGGCATCGACAATCATTTGCATCTACAGAAAAACCTTGATGATACATCACACATCAAGGCTGGGGAAGGGAAGGGGAGCCAGACTCCAAATGTCAGTGAGCGTTCAAGGACATATTGGACACCAATAATGGATCGTTACCTCCTTGAGTTGTTACAAGACCAGGTGCAGAGAGGAAATAAACTAGGACAAACTTTCATAACTCAGGCTTGGAATGACATGGTTGTATCTTTCAATGCACGATTCAAATCTCACCATGATAAAGATGTTTTGAAGAATCGTTTCAAACATTGGCGAAAGCAGTACAATGACATCAAGATTCTTCTTAAGCACGGTGGATTTTCGTGGGATGAATCACGAGAAATGGTAACAGCTGAGGATAGTGTTTGGGATGGTTATATTAAGAACCATCCTGATGCTCGATCGATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

448

Amino Acids

52.22

Weight (kDa)

6.53

Isoelectric Point (pI)

28.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 16 - 110 4.1e-34 Myb/SANT-like DNA-binding domain
Myb_DNA-bind_3 PF12776 180 - 274 1.9e-28 Myb/SANT-like DNA-binding domain
Myb_DNA-bind_3 PF12776 343 - 437 5e-30 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 197, 541
AccI GTMKAC 1 cut(s) 215
AccII CGCG 1 cut(s) 781
AciI CCGC 1 cut(s) 17
AclWI GGATC 1 cut(s) 1053
AcoI YGGCCR 1 cut(s) 118
AcsI RAATTY 3 cut(s) 379, 653, 665
AfaI GTAC 2 cut(s) 831, 1217
AfiI CCNNNNNNNGG 1 cut(s) 16
AflII CTTAAG 1 cut(s) 1238
AgeI ACCGGT 1 cut(s) 370
AjnI CCWGG 4 cut(s) 140, 632, 767, 1074
AjuI GAANNNNNNNTTGG 2 cut(s) 897, 929
AluBI AGCT 5 cut(s) 110, 305, 684, 797, 1286
AluI AGCT 5 cut(s) 110, 305, 684, 797, 1286
Alw21I GWGCWC 1 cut(s) 112
AlwI GGATC 1 cut(s) 1053
AoxI GGCC 3 cut(s) 118, 138, 353
ApeKI GCWGC 2 cut(s) 20, 501
ApoI RAATTY 3 cut(s) 379, 653, 665
ArsI GACNNNNNNTTYG 4 cut(s) 440, 472, 548, 580
AsiGI ACCGGT 1 cut(s) 370
Asp700I GAANNNNTTC 1 cut(s) 1193
AspLEI GCGC 1 cut(s) 528
AspS9I GGNCC 3 cut(s) 144, 556, 671
AsuC2I CCSGG 1 cut(s) 344
AsuHPI GGTGA 3 cut(s) 332, 500, 1157
AvaII GGWCC 3 cut(s) 144, 556, 671
BalI TGGCCA 1 cut(s) 120
BanII GRGCYC 1 cut(s) 112
BauI CACGAG 2 cut(s) 111, 1269
Bbv12I GWGCWC 1 cut(s) 112
BbvCI CCTCAGC 1 cut(s) 1287
BbvI GCAGC 2 cut(s) 32, 513
BccI CCATC 5 cut(s) 55, 289, 416, 1298, 1329
BceAI ACGGC 1 cut(s) 368
BciT130I CCWGG 4 cut(s) 142, 634, 769, 1076
BcnI CCSGG 1 cut(s) 344
BfaI CTAG 2 cut(s) 548, 1097
BfmI CTRYAG 1 cut(s) 938
BfoI RGCGCY 1 cut(s) 529
BfrI CTTAAG 1 cut(s) 1238
BisI GCNGC 3 cut(s) 18, 21, 502
BlpI GCTNAGC 1 cut(s) 155
BlsI GCNGC 3 cut(s) 19, 22, 503
Bme1390I CCNGG 5 cut(s) 142, 344, 634, 769, 1076
Bme18I GGWCC 3 cut(s) 144, 556, 671
BmgT120I GGNCC 3 cut(s) 144, 556, 671
BmiI GGNNCC 1 cut(s) 992
BmrFI CCNGG 5 cut(s) 142, 344, 634, 769, 1076
BmsI GCATC 9 cut(s) 219, 313, 337, 709, 724, 805, 927, 943, 1318
BoxI GACNNNNGTC 1 cut(s) 285
BplI GAGNNNNNCTC 2 cut(s) 982, 1014
Bpu10I CCTNAGC 1 cut(s) 1287
Bpu1102I GCTNAGC 1 cut(s) 155
BpuEI CTTGAG 1 cut(s) 1079
BpuMI CCSGG 1 cut(s) 344
Bsa29I ATCGAT 2 cut(s) 703, 1337
BsaBI GATNNNNATC 1 cut(s) 1159
BsaJI CCNNGG 3 cut(s) 483, 530, 768
BsaWI WCCGGW 1 cut(s) 370
BsaXI ACNNNNNCTCC 2 cut(s) 99, 129
Bsc4I CCNNNNNNNGG 1 cut(s) 16
Bse118I RCCGGY 2 cut(s) 210, 370
Bse1I ACTGG 1 cut(s) 559
Bse8I GATNNNNATC 1 cut(s) 1159
BseBI CCWGG 4 cut(s) 142, 634, 769, 1076
BseCI ATCGAT 2 cut(s) 703, 1337
BseDI CCNNGG 3 cut(s) 483, 530, 768
BseGI GGATG 8 cut(s) 234, 328, 352, 778, 820, 1267, 1309, 1321
BseJI GATNNNNATC 1 cut(s) 1159
BseLI CCNNNNNNNGG 1 cut(s) 16
BseMII CTCAG 3 cut(s) 169, 1130, 1278
BseNI ACTGG 1 cut(s) 559
BseRI GAGGAG 1 cut(s) 120
BseXI GCAGC 2 cut(s) 32, 513
BseYI CCCAGC 1 cut(s) 974
BsgI GTGCAG 1 cut(s) 1100
Bsh1236I CGCG 1 cut(s) 781
Bsh1285I CGRYCG 1 cut(s) 1337
BshFI GGCC 3 cut(s) 120, 140, 355
BshTI ACCGGT 1 cut(s) 370
BshVI ATCGAT 2 cut(s) 703, 1337
BsiEI CGRYCG 1 cut(s) 1337
BsiHKAI GWGCWC 1 cut(s) 112
BsiSI CCGG 3 cut(s) 211, 344, 371
BslFI GGGAC 2 cut(s) 293, 871
BslI CCNNNNNNNGG 1 cut(s) 16
BsmFI GGGAC 2 cut(s) 293, 871
BsmI GAATGC 2 cut(s) 617, 911
BsnI GGCC 3 cut(s) 120, 140, 355
Bsp1286I GDGCHC 1 cut(s) 112
Bsp143I GATC 6 cut(s) 31, 79, 437, 910, 1045, 1334
Bsp1720I GCTNAGC 1 cut(s) 155
BspACI CCGC 1 cut(s) 17
BspANI GGCC 3 cut(s) 120, 140, 355
BspCNI CTCAG 3 cut(s) 168, 1129, 1279
BspDI ATCGAT 2 cut(s) 703, 1337
BspFNI CGCG 1 cut(s) 781
BspLI GGNNCC 1 cut(s) 992
BspPI GGATC 1 cut(s) 1053
BspTI CTTAAG 1 cut(s) 1238
BsrFI RCCGGY 2 cut(s) 210, 370
BsrI ACTGG 1 cut(s) 559
BssAI RCCGGY 2 cut(s) 210, 370
BssECI CCNNGG 3 cut(s) 483, 530, 768
BssMI GATC 6 cut(s) 31, 79, 437, 910, 1045, 1334
BssNAI GTATAC 1 cut(s) 216
BssSI CACGAG 2 cut(s) 111, 1269
BssT1I CCWWGG 1 cut(s) 530
Bst1107I GTATAC 1 cut(s) 216
Bst2BI CACGAG 2 cut(s) 111, 1269
Bst2UI CCWGG 4 cut(s) 142, 634, 769, 1076
Bst4CI ACNGT 4 cut(s) 434, 640, 717, 1247
BstAFI CTTAAG 1 cut(s) 1238
BstC8I GCNNGC 3 cut(s) 138, 524, 648
BstDEI CTNAG 4 cut(s) 155, 749, 1116, 1287
BstDSI CCRYGG 1 cut(s) 483
BstF5I GGATG 8 cut(s) 234, 328, 352, 778, 820, 1267, 1309, 1321
BstFNI CGCG 1 cut(s) 781
BstH2I RGCGCY 1 cut(s) 529
BstHHI GCGC 1 cut(s) 528
BstKTI GATC 6 cut(s) 34, 82, 440, 913, 1048, 1337
BstMBI GATC 6 cut(s) 31, 79, 437, 910, 1045, 1334
BstMCI CGRYCG 1 cut(s) 1337
BstMWI GCNNNNNNNGC 1 cut(s) 915
BstNI CCWGG 4 cut(s) 142, 634, 769, 1076
BstNSI RCATGY 1 cut(s) 886
BstPAI GACNNNNGTC 1 cut(s) 285
BstSCI CCNGG 5 cut(s) 140, 342, 632, 767, 1074
BstSFI CTRYAG 1 cut(s) 938
BstUI CGCG 1 cut(s) 781
BstV1I GCAGC 2 cut(s) 32, 513
BstZ17I GTATAC 1 cut(s) 216
Bsu15I ATCGAT 2 cut(s) 703, 1337
BsuRI GGCC 3 cut(s) 120, 140, 355
BsuTUI ATCGAT 2 cut(s) 703, 1337
BtgI CCRYGG 1 cut(s) 483
BtsCI GGATG 8 cut(s) 234, 328, 352, 778, 820, 1267, 1309, 1321
BtsIMutI CAGTG 1 cut(s) 1015
Cac8I GCNNGC 3 cut(s) 138, 524, 648
CfoI GCGC 1 cut(s) 528
Cfr10I RCCGGY 2 cut(s) 210, 370
Cfr13I GGNCC 3 cut(s) 144, 556, 671
ClaI ATCGAT 2 cut(s) 703, 1337
CsiI ACCWGGT 1 cut(s) 1074
Csp6I GTAC 2 cut(s) 830, 1216
CspAI ACCGGT 1 cut(s) 370
CviAII CATG 5 cut(s) 446, 839, 883, 1132, 1169
CviQI GTAC 2 cut(s) 830, 1216
DdeI CTNAG 4 cut(s) 155, 749, 1116, 1287
DpnI GATC 6 cut(s) 33, 81, 439, 912, 1047, 1336
DpnII GATC 6 cut(s) 31, 79, 437, 910, 1045, 1334
DrdI GACNNNNNNGTC 2 cut(s) 197, 541
DseDI GACNNNNNNGTC 2 cut(s) 197, 541
EaeI YGGCCR 1 cut(s) 118
Ecl136II GAGCTC 1 cut(s) 110
Eco130I CCWWGG 1 cut(s) 530
Eco147I AGGCCT 1 cut(s) 140
Eco24I GRGCYC 1 cut(s) 112
Eco47I GGWCC 3 cut(s) 144, 556, 671
Eco53kI GAGCTC 1 cut(s) 110
EcoICRI GAGCTC 1 cut(s) 110
EcoRII CCWGG 4 cut(s) 140, 632, 767, 1074
EcoT14I CCWWGG 1 cut(s) 530
EcoT22I ATGCAT 2 cut(s) 619, 820
EcoT38I GRGCYC 1 cut(s) 112
ErhI CCWWGG 1 cut(s) 530
FaeI CATG 5 cut(s) 449, 842, 886, 1135, 1172
FaqI GGGAC 2 cut(s) 293, 871
FatI CATG 5 cut(s) 445, 838, 882, 1131, 1168
FauNDI CATATG 2 cut(s) 317, 786
FblI GTMKAC 1 cut(s) 215
Fnu4HI GCNGC 3 cut(s) 18, 21, 502
FokI GGATG 8 cut(s) 241, 335, 359, 785, 827, 1274, 1308, 1316
FriOI GRGCYC 1 cut(s) 112
Fsp4HI GCNGC 3 cut(s) 18, 21, 502
FspBI CTAG 2 cut(s) 548, 1097
GlaI GCGC 1 cut(s) 527
GluI GCNGC 3 cut(s) 18, 21, 502
GsaI CCCAGC 1 cut(s) 978
HaeII RGCGCY 1 cut(s) 529
HaeIII GGCC 3 cut(s) 120, 140, 355
HapII CCGG 3 cut(s) 211, 344, 371
HhaI GCGC 1 cut(s) 528
Hin1II CATG 5 cut(s) 449, 842, 886, 1135, 1172
Hin6I GCGC 1 cut(s) 526
HinP1I GCGC 1 cut(s) 526
HincII GTYRAC 1 cut(s) 571
HindII GTYRAC 1 cut(s) 571
HinfI GANTC 6 cut(s) 52, 997, 1155, 1189, 1231, 1265
HpaII CCGG 3 cut(s) 211, 344, 371
HphI GGTGA 3 cut(s) 332, 500, 1157
Hpy166II GTNNAC 4 cut(s) 216, 340, 571, 832
Hpy188I TCNGA 2 cut(s) 264, 294
Hpy188III TCNNGA 4 cut(s) 202, 1228, 1269, 1325
Hpy8I GTNNAC 4 cut(s) 216, 340, 571, 832
HpyAV CCTTC 4 cut(s) 522, 751, 974, 979
HpyCH4III ACNGT 4 cut(s) 434, 640, 717, 1247
HpyCH4IV ACGT 2 cut(s) 44, 450
HpyF10VI GCNNNNNNNGC 1 cut(s) 915
HpyF3I CTNAG 4 cut(s) 155, 749, 1116, 1287
HpySE526I ACGT 2 cut(s) 44, 450
Hsp92II CATG 5 cut(s) 449, 842, 886, 1135, 1172
HspAI GCGC 1 cut(s) 526
Kzo9I GATC 6 cut(s) 31, 79, 437, 910, 1045, 1334
LmnI GCTCC 4 cut(s) 91, 107, 514, 990
Lsp1109I GCAGC 2 cut(s) 32, 513
LweI GCATC 9 cut(s) 219, 313, 337, 709, 724, 805, 927, 943, 1318
MabI ACCWGGT 1 cut(s) 1074
MaeI CTAG 2 cut(s) 548, 1097
MaeII ACGT 2 cut(s) 44, 450
MaeIII GTNAC 6 cut(s) 478, 488, 543, 1049, 1065, 1279
MalI GATC 6 cut(s) 33, 81, 439, 912, 1047, 1336
MboI GATC 6 cut(s) 31, 79, 437, 910, 1045, 1334
MboII GAAGA 4 cut(s) 438, 674, 1198, 1226
MfeI CAATTG 2 cut(s) 95, 594
MhlI GDGCHC 1 cut(s) 112
MlsI TGGCCA 1 cut(s) 120
MluCI AATT 8 cut(s) 95, 173, 379, 389, 594, 653, 665, 741
MluNI TGGCCA 1 cut(s) 120
MlyI GAGTC 2 cut(s) 46, 991
MmeI TCCRAC 2 cut(s) 69, 80
MnlI CCTC 8 cut(s) 98, 407, 684, 799, 846, 1064, 1079, 1282
Mox20I TGGCCA 1 cut(s) 120
Mph1103I ATGCAT 2 cut(s) 619, 820
MroXI GAANNNNTTC 1 cut(s) 1193
MscI TGGCCA 1 cut(s) 120
MseI TTAA 5 cut(s) 165, 657, 695, 1239, 1314
MslI CAYNNNNRTG 3 cut(s) 345, 837, 1326
Msp20I TGGCCA 1 cut(s) 120
MspA1I CMGCKG 1 cut(s) 1286
MspCI CTTAAG 1 cut(s) 1238
MspI CCGG 3 cut(s) 211, 344, 371
MspR9I CCNGG 5 cut(s) 142, 344, 634, 769, 1076
MunI CAATTG 2 cut(s) 95, 594
Mva1269I GAATGC 2 cut(s) 617, 911
MvaI CCWGG 4 cut(s) 142, 634, 769, 1076
MvnI CGCG 1 cut(s) 781
MwoI GCNNNNNNNGC 1 cut(s) 915
NciI CCSGG 1 cut(s) 344
NdeI CATATG 2 cut(s) 317, 786
NdeII GATC 6 cut(s) 31, 79, 437, 910, 1045, 1334
NlaIII CATG 5 cut(s) 449, 842, 886, 1135, 1172
NlaIV GGNNCC 1 cut(s) 992
NmuCI GTSAC 2 cut(s) 488, 543
NsiI ATGCAT 2 cut(s) 619, 820
NspI RCATGY 1 cut(s) 886
PceI AGGCCT 1 cut(s) 140
PctI GAATGC 2 cut(s) 617, 911
PdmI GAANNNNTTC 1 cut(s) 1193
PfeI GAWTC 4 cut(s) 1155, 1189, 1231, 1265
PinAI ACCGGT 1 cut(s) 370
PkrI GCNGC 3 cut(s) 19, 22, 503
Ple19I CGATCG 1 cut(s) 1337
PleI GAGTC 2 cut(s) 46, 991
PpsI GAGTC 2 cut(s) 46, 991
PshAI GACNNNNGTC 1 cut(s) 285
Psp124BI GAGCTC 1 cut(s) 112
Psp6I CCWGG 4 cut(s) 140, 632, 767, 1074
PspFI CCCAGC 1 cut(s) 974
PspGI CCWGG 4 cut(s) 140, 632, 767, 1074
PspN4I GGNNCC 1 cut(s) 992
PspPI GGNCC 3 cut(s) 144, 556, 671
PvuI CGATCG 1 cut(s) 1337
PvuII CAGCTG 1 cut(s) 1286
RsaI GTAC 2 cut(s) 831, 1217
RsaNI GTAC 2 cut(s) 830, 1216
RseI CAYNNNNRTG 3 cut(s) 345, 837, 1326
SacI GAGCTC 1 cut(s) 112
SaqAI TTAA 5 cut(s) 165, 657, 695, 1239, 1314
SatI GCNGC 3 cut(s) 18, 21, 502
Sau3AI GATC 6 cut(s) 31, 79, 437, 910, 1045, 1334
Sau96I GGNCC 3 cut(s) 144, 556, 671
SchI GAGTC 2 cut(s) 46, 991
ScrFI CCNGG 5 cut(s) 142, 344, 634, 769, 1076
SduI GDGCHC 1 cut(s) 112
SexAI ACCWGGT 1 cut(s) 1074
SfaNI GCATC 9 cut(s) 219, 313, 337, 709, 724, 805, 927, 943, 1318
SfcI CTRYAG 1 cut(s) 938
SinI GGWCC 3 cut(s) 144, 556, 671
SmiMI CAYNNNNRTG 3 cut(s) 345, 837, 1326
SmlI CTYRAG 2 cut(s) 1058, 1238
SmoI CTYRAG 2 cut(s) 1058, 1238
Sse9I AATT 8 cut(s) 95, 173, 379, 389, 594, 653, 665, 741
SseBI AGGCCT 1 cut(s) 140
SsiI CCGC 1 cut(s) 17
SspI AATATT 1 cut(s) 253
SspMI CTAG 2 cut(s) 548, 1097
SstI GAGCTC 1 cut(s) 112
StuI AGGCCT 1 cut(s) 140
StyD4I CCNGG 5 cut(s) 140, 342, 632, 767, 1074
StyI CCWWGG 1 cut(s) 530
TaaI ACNGT 4 cut(s) 434, 640, 717, 1247
TaiI ACGT 2 cut(s) 47, 453
TaqI TCGA 5 cut(s) 436, 703, 921, 1333, 1337
TaqII GACCGA 2 cut(s) 24, 161
TasI AATT 8 cut(s) 95, 173, 379, 389, 594, 653, 665, 741
TatI WGTACW 1 cut(s) 1215
TauI GCSGC 1 cut(s) 20
TfiI GAWTC 4 cut(s) 1155, 1189, 1231, 1265
Tru1I TTAA 5 cut(s) 165, 657, 695, 1239, 1314
Tru9I TTAA 5 cut(s) 165, 657, 695, 1239, 1314
TscAI CASTG 1 cut(s) 1015
TseFI GTSAC 2 cut(s) 488, 543
TseI GCWGC 2 cut(s) 20, 501
Tsp45I GTSAC 2 cut(s) 488, 543
TspDTI ATGAA 6 cut(s) 402, 480, 675, 789, 1099, 1278
TspGWI ACGGA 2 cut(s) 507, 859
TspRI CASTG 1 cut(s) 1015
Vha464I CTTAAG 1 cut(s) 1238
VpaK11BI GGWCC 3 cut(s) 144, 556, 671
XapI RAATTY 3 cut(s) 379, 653, 665
XceI RCATGY 1 cut(s) 886
XcmI CCANNNNNNNNNTGG 1 cut(s) 537
XmiI GTMKAC 1 cut(s) 215
XmnI GAANNNNTTC 1 cut(s) 1193
XspI CTAG 2 cut(s) 548, 1097
Zsp2I ATGCAT 2 cut(s) 619, 820
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.