Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0005366

Physical Location & Seq

Genomic Coordinates Forward (+)

2830385 .. 2833420

Gene Structure 3036 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGAGGATTAAGCGGTTCGGATTCATGGATTTCGATGAAGGATCTCCATACAATTCACATTTTAGTTCATTTGCGGATAATTCATTGCAACGGTGTAGATACTTTCATGTTCCCGGAAGTTTAGCTCTTGAAGGAGCATTTAACCACATCTCTAAACTTGCTGGTTCTTTACTATTCTTCTTCTCTAGTGGACCCAATACAAATGCTACTAGAGATATAGAGGGTAATTTGCATGATTCTGAACCTGGAAGCTCCACGTCTTATCCACAAGTTAAACATTTTACTTCTGGTCGACATAATCTTAGAGGATTTCACTTTGGATTTGCATCAAGAGGAGAATCTGCTAATGCAGTGATTTTTGGAAAGATTTCGGCTTTTGTAATGCAATTCCTACACAGAGAAGCTGAAAAGCTACATTCACATCCCTTGCTCTCGTTAGCTGCTGGACTTGTACCTCCTTTTGGCAGCTTATCTTCAAATATACTAGCTGTTCCATTGGAGACTACGGATGTCTTGGATCAAAGGCCTTGTGAGGTTGGGCATCACAGATGTGATGGATTACCAATTCCCGACTTGAACTGGAGAAGACATGCAGTGGAACCTATTACTGGCACTGAGTTTCCTATGATTTTGGACGATGTTTTAATAGGGGAGAGTAATTCCAGTTTAAGTTCAGAGGTCCTTGTGGGAACCGGATCCAAAACAATGACAATAATCAAAATAAAATCTCTGAAGGTCTATGCATTTGGGTTCTATATCCATCCTCACTCTGTTTGCAAGAAGTTGGGGCCAAAATATGCTTCCATTTCAGTAGATGAACTAAACAAGTGCCATGATTTCTATGAAGATCTTCTCAGGGCGGATATTGATATGACAGTTAGGCTTGTGGTTAATTGCAATGGGATGAAAATCAATACTGTGAGAGATGCCTTTGAGAAATCCCTTCGAGCTCGATTGGTGAAGGCGAACCCAGAGACCGACTATCATTGCATAAGAACATTTGGTTCAAACTTCACACAAGATATTCCTTTGCCAGTGGGAACAACAATTGATTTCCAACGTACAGCTGATGGAAACTTAATTACTAAAATTGAAGGTAATCAGATTGGAGCAGTCCACAGCAAGGATCTATGCACTCAGCAGTGCCAGATGCTGAAGACGTTGATTGGACTGGAAGGCCTCACAAAAGCAATCAGAGCCTGCTGCAAAAGTTTAAAGGCTTGGCTGGGGTCTCGCCGGCTTCTAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005504 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0008150 GO:0008152 GO:0008289 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0019752 GO:0031406 GO:0032787 GO:0033293 GO:0036094 GO:0043167 GO:0043168 GO:0043177 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chalcone_2

Protein Analysis

417

Amino Acids

46.11

Weight (kDa)

8.24

Isoelectric Point (pI)

31.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chalcone	PF02431	220 - 401	3e-06	Chalcone-flavanone isomerase
Chalcone_2	PF16035	227 - 378	1.3e-14	Chalcone isomerase like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26310 AT2G26310 AT2G26310 AT2G26310 AT2G26310
fragaria_vesca	FvH4_2g30870 FvH4_2g30870 FvH4_2g30870 FvH4_2g30870 FvH4_2g30870
malus_domestica	MD08G1072900.v1.1 MD15G1048900.v1.1
prunus_persica	Prupe.1G403200_v2.0.a1 Prupe.1G403200_v2.0.a1
pyrus_communis	pycom08g06030 pycom15g04770
rosa_chinensis	RchiOBHm_Chr6g0311981
rosa_laevigata	RLG00000010364
rosa_multiflora	Rmu_sc0005381.1_g000005
rosa_roxburghii	Rroxscaffold_7G00157170
rosa_rugosa	Rorug06G0391700 Rorug06G0391700 Rorug06G0391800 Rorug06G0391800
rosa_samantha	Rh6AG508300 Rh6BG519600 Rh6CG525400 Rh6DG511000
rosa_wichuraiana	Rw6G044250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	292
AciI	CCGC	3 cut(s)	13, 74, 860
AclWI	GGATC	5 cut(s)	49, 525, 690, 703, 1134
AcuI	CTGAAG	2 cut(s)	752, 1175
AfaI	GTAC	2 cut(s)	453, 1063
AfiI	CCNNNNNNNGG	3 cut(s)	461, 608, 1123
AgsI	TTSAA	5 cut(s)	131, 477, 577, 1008, 1094
AjiI	CACGTC	1 cut(s)	258
AjnI	CCWGG	1 cut(s)	244
AjuI	GAANNNNNNNTTGG	2 cut(s)	784, 816
AleI	CACNNNNGTG	1 cut(s)	549
AluBI	AGCT	9 cut(s)	125, 252, 404, 412, 440, 468, 488, 950, 1067
AluI	AGCT	9 cut(s)	125, 252, 404, 412, 440, 468, 488, 950, 1067
Alw21I	GWGCWC	1 cut(s)	952
Alw26I	GTCTC	3 cut(s)	494, 968, 1236
AlwI	GGATC	5 cut(s)	49, 525, 690, 703, 1134
AlwNI	CAGNNNCTG	2 cut(s)	1153, 1200
AoxI	GGCC	3 cut(s)	524, 788, 1177
ApeKI	GCWGC	3 cut(s)	440, 465, 1203
Asp700I	GAANNNNTTC	2 cut(s)	367, 849
AspS9I	GGNCC	3 cut(s)	191, 679, 788
AsuC2I	CCSGG	1 cut(s)	114
AsuHPI	GGTGA	1 cut(s)	970
AvaII	GGWCC	2 cut(s)	191, 679
BamHI	GGATCC	1 cut(s)	695
BanII	GRGCYC	1 cut(s)	952
BbsI	GAAGAC	2 cut(s)	592, 1163
Bbv12I	GWGCWC	1 cut(s)	952
BbvI	GCAGC	3 cut(s)	427, 477, 1190
BccI	CCATC	3 cut(s)	548, 768, 1064
BciT130I	CCWGG	1 cut(s)	246
BcnI	CCSGG	1 cut(s)	114
BcoDI	GTCTC	3 cut(s)	494, 968, 1236
BfaI	CTAG	4 cut(s)	186, 210, 485, 1244
BglII	AGATCT	1 cut(s)	847
BisI	GCNGC	3 cut(s)	441, 466, 1204
BlsI	GCNGC	3 cut(s)	442, 467, 1205
Bme1390I	CCNGG	2 cut(s)	114, 246
Bme18I	GGWCC	2 cut(s)	191, 679
BmgBI	CACGTC	1 cut(s)	258
BmgT120I	GGNCC	3 cut(s)	191, 679, 788
BmiI	GGNNCC	5 cut(s)	193, 600, 691, 697, 789
BmrFI	CCNGG	2 cut(s)	114, 246
BmsI	GCATC	4 cut(s)	335, 550, 916, 1140
BpiI	GAAGAC	2 cut(s)	592, 1163
BpmI	CTGGAG	1 cut(s)	601
BpuMI	CCSGG	1 cut(s)	114
BsaBI	GATNNNNATC	2 cut(s)	325, 908
BsaI	GGTCTC	2 cut(s)	968, 1236
BsaWI	WCCGGW	1 cut(s)	692
Bsc4I	CCNNNNNNNGG	3 cut(s)	461, 608, 1123
Bse118I	RCCGGY	1 cut(s)	1236
Bse1I	ACTGG	5 cut(s)	584, 613, 663, 1034, 1176
Bse3DI	GCAATG	3 cut(s)	83, 904, 985
Bse8I	GATNNNNATC	2 cut(s)	325, 908
BseBI	CCWGG	1 cut(s)	246
BseGI	GGATG	4 cut(s)	421, 514, 760, 909
BseJI	GATNNNNATC	2 cut(s)	325, 908
BseLI	CCNNNNNNNGG	3 cut(s)	461, 608, 1123
BseMI	GCAATG	3 cut(s)	83, 904, 985
BseMII	CTCAG	3 cut(s)	606, 868, 1151
BseNI	ACTGG	5 cut(s)	584, 613, 663, 1034, 1176
BseRI	GAGGAG	1 cut(s)	348
BseXI	GCAGC	3 cut(s)	427, 477, 1190
BseYI	CCCAGC	1 cut(s)	1225
BshFI	GGCC	3 cut(s)	526, 790, 1179
BsiHKAI	GWGCWC	1 cut(s)	952
BsiSI	CCGG	3 cut(s)	114, 693, 1237
BslI	CCNNNNNNNGG	3 cut(s)	461, 608, 1123
BsmAI	GTCTC	3 cut(s)	494, 968, 1236
BsnI	GGCC	3 cut(s)	526, 790, 1179
Bso31I	GGTCTC	2 cut(s)	968, 1236
Bsp1286I	GDGCHC	1 cut(s)	952
Bsp143I	GATC	5 cut(s)	41, 517, 695, 847, 1126
BspACI	CCGC	3 cut(s)	13, 74, 860
BspANI	GGCC	3 cut(s)	526, 790, 1179
BspCNI	CTCAG	3 cut(s)	607, 867, 1150
BspLI	GGNNCC	5 cut(s)	193, 600, 691, 697, 789
BspPI	GGATC	5 cut(s)	49, 525, 690, 703, 1134
BspTNI	GGTCTC	2 cut(s)	968, 1236
BsrDI	GCAATG	3 cut(s)	83, 904, 985
BsrFI	RCCGGY	1 cut(s)	1236
BsrI	ACTGG	5 cut(s)	584, 613, 663, 1034, 1176
BssAI	RCCGGY	1 cut(s)	1236
BssMI	GATC	5 cut(s)	41, 517, 695, 847, 1126
Bst2UI	CCWGG	1 cut(s)	246
Bst4CI	ACNGT	3 cut(s)	93, 877, 919
BstC8I	GCNNGC	2 cut(s)	1201, 1238
BstDEI	CTNAG	4 cut(s)	302, 615, 854, 1137
BstF5I	GGATG	4 cut(s)	421, 514, 760, 909
BstKTI	GATC	5 cut(s)	44, 520, 698, 850, 1129
BstMAI	GTCTC	3 cut(s)	494, 968, 1236
BstMBI	GATC	5 cut(s)	41, 517, 695, 847, 1126
BstMWI	GCNNNNNNNGC	1 cut(s)	1196
BstNI	CCWGG	1 cut(s)	246
BstNSI	RCATGY	1 cut(s)	593
BstSCI	CCNGG	2 cut(s)	112, 244
BstV1I	GCAGC	3 cut(s)	427, 477, 1190
BstV2I	GAAGAC	2 cut(s)	592, 1163
BstX2I	RGATCY	4 cut(s)	41, 695, 847, 1126
BstYI	RGATCY	4 cut(s)	41, 695, 847, 1126
BsuRI	GGCC	3 cut(s)	526, 790, 1179
BtrI	CACGTC	1 cut(s)	258
BtsCI	GGATG	4 cut(s)	421, 514, 760, 909
BtsI	GCAGTG	3 cut(s)	357, 600, 1148
BtsIMutI	CAGTG	5 cut(s)	357, 600, 612, 1041, 1148
Cac8I	GCNNGC	2 cut(s)	1201, 1238
CaiI	CAGNNNCTG	2 cut(s)	1153, 1200
Cfr10I	RCCGGY	1 cut(s)	1236
Cfr13I	GGNCC	3 cut(s)	191, 679, 788
Csp6I	GTAC	2 cut(s)	452, 1062
CviAII	CATG	5 cut(s)	25, 107, 233, 590, 833
CviQI	GTAC	2 cut(s)	452, 1062
DdeI	CTNAG	4 cut(s)	302, 615, 854, 1137
DpnI	GATC	5 cut(s)	43, 519, 697, 849, 1128
DpnII	GATC	5 cut(s)	41, 517, 695, 847, 1126
DraI	TTTAAA	1 cut(s)	1215
EciI	GGCGGA	1 cut(s)	875
Ecl136II	GAGCTC	1 cut(s)	950
Eco147I	AGGCCT	2 cut(s)	526, 1179
Eco24I	GRGCYC	1 cut(s)	952
Eco31I	GGTCTC	2 cut(s)	968, 1236
Eco47I	GGWCC	2 cut(s)	191, 679
Eco53kI	GAGCTC	1 cut(s)	950
Eco57I	CTGAAG	2 cut(s)	752, 1175
EcoICRI	GAGCTC	1 cut(s)	950
EcoO109I	RGGNCCY	1 cut(s)	679
EcoRII	CCWGG	1 cut(s)	244
EcoT22I	ATGCAT	1 cut(s)	745
EcoT38I	GRGCYC	1 cut(s)	952
FaeI	CATG	5 cut(s)	28, 110, 236, 593, 836
FatI	CATG	5 cut(s)	24, 106, 232, 589, 832
FblI	GTMKAC	1 cut(s)	292
Fnu4HI	GCNGC	3 cut(s)	441, 466, 1204
FokI	GGATG	4 cut(s)	408, 521, 747, 916
FriOI	GRGCYC	1 cut(s)	952
Fsp4HI	GCNGC	3 cut(s)	441, 466, 1204
FspBI	CTAG	4 cut(s)	186, 210, 485, 1244
GluI	GCNGC	3 cut(s)	441, 466, 1204
GsaI	CCCAGC	1 cut(s)	1229
GsuI	CTGGAG	1 cut(s)	601
HaeIII	GGCC	3 cut(s)	526, 790, 1179
HapII	CCGG	3 cut(s)	114, 693, 1237
Hin1II	CATG	5 cut(s)	28, 110, 236, 593, 836
HincII	GTYRAC	1 cut(s)	293
HindII	GTYRAC	1 cut(s)	293
HinfI	GANTC	3 cut(s)	21, 236, 338
HpaII	CCGG	3 cut(s)	114, 693, 1237
HphI	GGTGA	1 cut(s)	970
Hpy166II	GTNNAC	3 cut(s)	191, 293, 1117
Hpy188I	TCNGA	6 cut(s)	20, 241, 676, 732, 1104, 1196
Hpy188III	TCNNGA	4 cut(s)	128, 330, 569, 1244
Hpy8I	GTNNAC	3 cut(s)	191, 293, 1117
HpyAV	CCTTC	7 cut(s)	32, 125, 727, 953, 955, 1088, 1169
HpyCH4III	ACNGT	3 cut(s)	93, 877, 919
HpyCH4IV	ACGT	3 cut(s)	257, 1060, 1160
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1196
HpyF3I	CTNAG	4 cut(s)	302, 615, 854, 1137
HpySE526I	ACGT	3 cut(s)	257, 1060, 1160
Hsp92II	CATG	5 cut(s)	28, 110, 236, 593, 836
KroI	GCCGGC	1 cut(s)	1236
KroNI	GCCGGC	1 cut(s)	1238
Kzo9I	GATC	5 cut(s)	41, 517, 695, 847, 1126
LmnI	GCTCC	3 cut(s)	134, 257, 1109
Lsp1109I	GCAGC	3 cut(s)	427, 477, 1190
LweI	GCATC	4 cut(s)	335, 550, 916, 1140
MaeI	CTAG	4 cut(s)	186, 210, 485, 1244
MaeII	ACGT	3 cut(s)	257, 1060, 1160
MalI	GATC	5 cut(s)	43, 519, 697, 849, 1128
MboI	GATC	5 cut(s)	41, 517, 695, 847, 1126
MboII	GAAGA	7 cut(s)	169, 172, 465, 597, 842, 857, 1168
MfeI	CAATTG	1 cut(s)	1047
MflI	RGATCY	4 cut(s)	41, 695, 847, 1126
MhlI	GDGCHC	1 cut(s)	952
MmeI	TCCRAC	1 cut(s)	1081
MnlI	CCTC	8 cut(s)	214, 299, 326, 465, 526, 670, 774, 1190
Mph1103I	ATGCAT	1 cut(s)	745
MroNI	GCCGGC	1 cut(s)	1236
MroXI	GAANNNNTTC	2 cut(s)	367, 849
MseI	TTAA	8 cut(s)	9, 141, 273, 644, 668, 891, 1079, 1214
MslI	CAYNNNNRTG	1 cut(s)	549
MspA1I	CMGCKG	1 cut(s)	1067
MspI	CCGG	3 cut(s)	114, 693, 1237
MspR9I	CCNGG	2 cut(s)	114, 246
MunI	CAATTG	1 cut(s)	1047
MvaI	CCWGG	1 cut(s)	246
MwoI	GCNNNNNNNGC	1 cut(s)	1196
NaeI	GCCGGC	1 cut(s)	1238
NciI	CCSGG	1 cut(s)	114
NdeII	GATC	5 cut(s)	41, 517, 695, 847, 1126
NgoMIV	GCCGGC	1 cut(s)	1236
NlaIII	CATG	5 cut(s)	28, 110, 236, 593, 836
NlaIV	GGNNCC	5 cut(s)	193, 600, 691, 697, 789
NsiI	ATGCAT	1 cut(s)	745
NspI	RCATGY	1 cut(s)	593
OliI	CACNNNNGTG	1 cut(s)	549
PceI	AGGCCT	2 cut(s)	526, 1179
PdiI	GCCGGC	1 cut(s)	1238
PdmI	GAANNNNTTC	2 cut(s)	367, 849
PfeI	GAWTC	3 cut(s)	21, 236, 338
PfoI	TCCNGGA	1 cut(s)	112
PkrI	GCNGC	3 cut(s)	442, 467, 1205
PpuMI	RGGWCCY	1 cut(s)	679
Psp124BI	GAGCTC	1 cut(s)	952
Psp5II	RGGWCCY	1 cut(s)	679
Psp6I	CCWGG	1 cut(s)	244
PspFI	CCCAGC	1 cut(s)	1225
PspGI	CCWGG	1 cut(s)	244
PspN4I	GGNNCC	5 cut(s)	193, 600, 691, 697, 789
PspPI	GGNCC	3 cut(s)	191, 679, 788
PspPPI	RGGWCCY	1 cut(s)	679
PstNI	CAGNNNCTG	2 cut(s)	1153, 1200
PsuI	RGATCY	4 cut(s)	41, 695, 847, 1126
PvuII	CAGCTG	1 cut(s)	1067
RsaI	GTAC	2 cut(s)	453, 1063
RsaNI	GTAC	2 cut(s)	452, 1062
RseI	CAYNNNNRTG	1 cut(s)	549
SacI	GAGCTC	1 cut(s)	952
SalI	GTCGAC	1 cut(s)	291
SaqAI	TTAA	8 cut(s)	9, 141, 273, 644, 668, 891, 1079, 1214
SatI	GCNGC	3 cut(s)	441, 466, 1204
Sau3AI	GATC	5 cut(s)	41, 517, 695, 847, 1126
Sau96I	GGNCC	3 cut(s)	191, 679, 788
ScrFI	CCNGG	2 cut(s)	114, 246
SduI	GDGCHC	1 cut(s)	952
SfaNI	GCATC	4 cut(s)	335, 550, 916, 1140
SinI	GGWCC	2 cut(s)	191, 679
SmiMI	CAYNNNNRTG	1 cut(s)	549
SseBI	AGGCCT	2 cut(s)	526, 1179
SsiI	CCGC	3 cut(s)	13, 74, 860
SspMI	CTAG	4 cut(s)	186, 210, 485, 1244
SstI	GAGCTC	1 cut(s)	952
StuI	AGGCCT	2 cut(s)	526, 1179
StyD4I	CCNGG	2 cut(s)	112, 244
TaaI	ACNGT	3 cut(s)	93, 877, 919
TaiI	ACGT	3 cut(s)	260, 1063, 1163
TaqI	TCGA	4 cut(s)	33, 292, 946, 952
TaqII	GACCGA	1 cut(s)	992
TfiI	GAWTC	3 cut(s)	21, 236, 338
Tru1I	TTAA	8 cut(s)	9, 141, 273, 644, 668, 891, 1079, 1214
Tru9I	TTAA	8 cut(s)	9, 141, 273, 644, 668, 891, 1079, 1214
TscAI	CASTG	5 cut(s)	357, 600, 619, 1041, 1148
TseI	GCWGC	3 cut(s)	440, 465, 1203
TspDTI	ATGAA	8 cut(s)	13, 51, 57, 72, 95, 831, 858, 920
TspGWI	ACGGA	1 cut(s)	521
TspRI	CASTG	5 cut(s)	357, 600, 619, 1041, 1148
VpaK11BI	GGWCC	2 cut(s)	191, 679
XbaI	TCTAGA	1 cut(s)	1243
XceI	RCATGY	1 cut(s)	593
XmiI	GTMKAC	1 cut(s)	292
XmnI	GAANNNNTTC	2 cut(s)	367, 849
XspI	CTAG	4 cut(s)	186, 210, 485, 1244
Zsp2I	ATGCAT	1 cut(s)	745

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.