pycom15g04940

DnaJ molecular chaperone homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0014099
Physical Location & Seq
Reverse (-)
2972931 .. 2974555
1625 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 669 bp
ATGGCTATGTCATCTTCCACCTCTACAATATATACTGCCCAGAAAAGCTTTCATATTACTAATCCAACTCGTAAGATTGGCTGTGCATTTTCGAACTCCATAAGGTTTGTGTCTAAACCGCGCGGGTTTTGCATTATTAGGAGCTCCGGCGATGCATCGGCAGAGACTGTTACGACCGAAGCCAATACAGGAAGCTCCATTGAAGTTCCGACAGAACCGCCTTCTCTGATTTCTGCTCTCAACGTCGAACGGGCTCTTCGTGGCATACCAATTACAGATGTTGATCACTATGGCAGGCTTGGACTTCAAAGAGGATGCTCCTATGATGAGGTTTCAGTTGCATACAAAGCCAAGCTTGACAAGCTAATGAGCCAGGAGTTAGAAGAAGAGGAGCTAAACAAGAATTTGGAACCTTTAAAAGAGTCGTACACAATCTTGTCATCGGGGGATGAACGAAGATTTTACGACTGGAGCCTGGCCAGGAGCGCAAACCCGGACGGGTACATTTGGCCTTATGAGGTTGAGAAAACCAGACCGGCCGAAGGAACTCCGCCGCCAGTGGGGGAACCAGAGGATCCGGGGCCGACGAGGTTGGTGGGGTACTTCATATTGGGATGGTTGATATTGTCCATCGTATTATCCATCGCCCTTAACCGATCGAGCCCTTAA

Protein Analysis

223

Amino Acids

24.45

Weight (kDa)

5.22

Isoelectric Point (pI)

55.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014099)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G21430 AT5G21430
fragaria_vesca FvH4_2g31130
malus_domestica MD15G1051600.v1.1
prunus_persica Prupe.1G405600_v2.0.a1 Prupe.1G405600_v2.0.a1
pyrus_communis pycom15g04940
rosa_chinensis RchiOBHm_Chr6g0311651
rosa_laevigata RLG00000010384
rosa_multiflora Rmu_sc0002888.1_g000007
rosa_roxburghii Rroxscaffold_7G00157410
rosa_rugosa Rorug06G0390300
rosa_samantha Rh6AG505600 Rh6BG516400 Rh6CG522300 Rh6DG508100
rosa_wichuraiana Rw6G044010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 121, 123
AciI CCGC 5 cut(s) 119, 123, 218, 551, 554
AclWI GGATC 2 cut(s) 569, 582
AcoI YGGCCR 2 cut(s) 477, 537
AcsI RAATTY 1 cut(s) 403
AfaI GTAC 3 cut(s) 428, 503, 602
AfiI CCNNNNNNNGG 2 cut(s) 542, 560
AgsI TTSAA 2 cut(s) 203, 308
AjnI CCWGG 3 cut(s) 372, 474, 479
AluBI AGCT 6 cut(s) 48, 144, 195, 355, 364, 394
AluI AGCT 6 cut(s) 48, 144, 195, 355, 364, 394
Alw21I GWGCWC 1 cut(s) 146
Alw26I GTCTC 1 cut(s) 158
AlwI GGATC 2 cut(s) 569, 582
AlwNI CAGNNNCTG 1 cut(s) 167
AoxI GGCC 4 cut(s) 477, 509, 537, 581
ApoI RAATTY 1 cut(s) 403
AspLEI GCGC 2 cut(s) 123, 488
AspS9I GGNCC 1 cut(s) 581
AsuC2I CCSGG 2 cut(s) 494, 579
AsuII TTCGAA 1 cut(s) 92
BalI TGGCCA 1 cut(s) 479
BamHI GGATCC 1 cut(s) 574
BanII GRGCYC 3 cut(s) 146, 256, 665
Bbv12I GWGCWC 1 cut(s) 146
BccI CCATC 3 cut(s) 609, 638, 650
BciT130I CCWGG 3 cut(s) 374, 476, 481
BclI TGATCA 1 cut(s) 283
BcnI CCSGG 2 cut(s) 494, 579
BcoDI GTCTC 1 cut(s) 158
BisI GCNGC 1 cut(s) 554
BlsI GCNGC 1 cut(s) 555
Bme1390I CCNGG 5 cut(s) 374, 476, 481, 494, 579
BmgT120I GGNCC 1 cut(s) 581
BmiI GGNNCC 5 cut(s) 411, 473, 567, 576, 582
BmrFI CCNGG 5 cut(s) 374, 476, 481, 494, 579
BmsI GCATC 3 cut(s) 142, 164, 305
BpmI CTGGAG 1 cut(s) 490
Bpu14I TTCGAA 1 cut(s) 92
BpuMI CCSGG 2 cut(s) 494, 579
BsaBI GATNNNNATC 1 cut(s) 282
BsaJI CCNNGG 1 cut(s) 578
Bsc4I CCNNNNNNNGG 2 cut(s) 542, 560
Bse118I RCCGGY 1 cut(s) 535
Bse1I ACTGG 2 cut(s) 473, 557
Bse8I GATNNNNATC 1 cut(s) 282
BseBI CCWGG 3 cut(s) 374, 476, 481
BseDI CCNNGG 1 cut(s) 578
BseGI GGATG 3 cut(s) 320, 454, 620
BseJI GATNNNNATC 1 cut(s) 282
BseLI CCNNNNNNNGG 2 cut(s) 542, 560
BseNI ACTGG 2 cut(s) 473, 557
BseRI GAGGAG 1 cut(s) 404
BseX3I CGGCCG 1 cut(s) 537
Bsh1236I CGCG 2 cut(s) 121, 123
Bsh1285I CGRYCG 3 cut(s) 177, 540, 659
BshFI GGCC 4 cut(s) 479, 511, 539, 583
BsiEI CGRYCG 3 cut(s) 177, 540, 659
BsiHKAI GWGCWC 1 cut(s) 146
BsiSI CCGG 4 cut(s) 147, 494, 536, 578
BslI CCNNNNNNNGG 2 cut(s) 542, 560
BsmAI GTCTC 1 cut(s) 158
BsnI GGCC 4 cut(s) 479, 511, 539, 583
Bsp119I TTCGAA 1 cut(s) 92
Bsp1286I GDGCHC 3 cut(s) 146, 256, 665
Bsp143I GATC 3 cut(s) 283, 574, 656
BspACI CCGC 5 cut(s) 119, 123, 218, 551, 554
BspANI GGCC 4 cut(s) 479, 511, 539, 583
BspFNI CGCG 2 cut(s) 121, 123
BspLI GGNNCC 5 cut(s) 411, 473, 567, 576, 582
BspPI GGATC 2 cut(s) 569, 582
BspQI GCTCTTC 1 cut(s) 261
BspT104I TTCGAA 1 cut(s) 92
BsrFI RCCGGY 1 cut(s) 535
BsrI ACTGG 2 cut(s) 473, 557
BssAI RCCGGY 1 cut(s) 535
BssECI CCNNGG 1 cut(s) 578
BssMI GATC 3 cut(s) 283, 574, 656
Bst2UI CCWGG 3 cut(s) 374, 476, 481
Bst4CI ACNGT 1 cut(s) 169
Bst6I CTCTTC 2 cut(s) 261, 381
BstBI TTCGAA 1 cut(s) 92
BstC8I GCNNGC 1 cut(s) 296
BstF5I GGATG 3 cut(s) 320, 454, 620
BstFNI CGCG 2 cut(s) 121, 123
BstHHI GCGC 2 cut(s) 123, 488
BstKTI GATC 3 cut(s) 286, 577, 659
BstMAI GTCTC 1 cut(s) 158
BstMBI GATC 3 cut(s) 283, 574, 656
BstMCI CGRYCG 3 cut(s) 177, 540, 659
BstMWI GCNNNNNNNGC 4 cut(s) 129, 347, 361, 485
BstNI CCWGG 3 cut(s) 374, 476, 481
BstSCI CCNGG 5 cut(s) 372, 474, 479, 492, 577
BstUI CGCG 2 cut(s) 121, 123
BstX2I RGATCY 1 cut(s) 574
BstYI RGATCY 1 cut(s) 574
BstZI CGGCCG 1 cut(s) 537
BsuRI GGCC 4 cut(s) 479, 511, 539, 583
BtgZI GCGATG 2 cut(s) 165, 628
BtsCI GGATG 3 cut(s) 320, 454, 620
BtsIMutI CAGTG 1 cut(s) 564
Cac8I GCNNGC 1 cut(s) 296
CaiI CAGNNNCTG 1 cut(s) 167
CfoI GCGC 2 cut(s) 123, 488
Cfr10I RCCGGY 1 cut(s) 535
Cfr13I GGNCC 1 cut(s) 581
Csp6I GTAC 3 cut(s) 427, 502, 601
CviQI GTAC 3 cut(s) 427, 502, 601
DpnI GATC 3 cut(s) 285, 576, 658
DpnII GATC 3 cut(s) 283, 574, 656
DraI TTTAAA 1 cut(s) 417
EaeI YGGCCR 2 cut(s) 477, 537
EagI CGGCCG 1 cut(s) 537
Eam1104I CTCTTC 2 cut(s) 261, 381
EarI CTCTTC 2 cut(s) 261, 381
EciI GGCGGA 1 cut(s) 540
Ecl136II GAGCTC 1 cut(s) 144
EclXI CGGCCG 1 cut(s) 537
Eco24I GRGCYC 3 cut(s) 146, 256, 665
Eco52I CGGCCG 1 cut(s) 537
Eco53kI GAGCTC 1 cut(s) 144
EcoICRI GAGCTC 1 cut(s) 144
EcoRII CCWGG 3 cut(s) 372, 474, 479
EcoT22I ATGCAT 1 cut(s) 157
EcoT38I GRGCYC 3 cut(s) 146, 256, 665
FalI AAGNNNNNCTT 2 cut(s) 339, 371
FauI CCCGC 1 cut(s) 116
FbaI TGATCA 1 cut(s) 283
Fnu4HI GCNGC 1 cut(s) 554
FokI GGATG 3 cut(s) 327, 461, 627
FriOI GRGCYC 3 cut(s) 146, 256, 665
Fsp4HI GCNGC 1 cut(s) 554
GlaI GCGC 2 cut(s) 122, 487
GluI GCNGC 1 cut(s) 554
GsuI CTGGAG 1 cut(s) 490
HaeIII GGCC 4 cut(s) 479, 511, 539, 583
HapII CCGG 4 cut(s) 147, 494, 536, 578
HhaI GCGC 2 cut(s) 123, 488
Hin6I GCGC 2 cut(s) 121, 486
HinP1I GCGC 2 cut(s) 121, 486
HindIII AAGCTT 2 cut(s) 46, 353
HinfI GANTC 1 cut(s) 422
HpaII CCGG 4 cut(s) 147, 494, 536, 578
Hpy166II GTNNAC 1 cut(s) 429
Hpy188I TCNGA 2 cut(s) 210, 228
Hpy8I GTNNAC 1 cut(s) 429
Hpy99I CGWCG 2 cut(s) 248, 589
HpyAV CCTTC 2 cut(s) 231, 536
HpyCH4III ACNGT 1 cut(s) 169
HpyCH4IV ACGT 1 cut(s) 243
HpyCH4V TGCA 4 cut(s) 86, 132, 155, 341
HpyF10VI GCNNNNNNNGC 4 cut(s) 129, 347, 361, 485
HpySE526I ACGT 1 cut(s) 243
HspAI GCGC 2 cut(s) 121, 486
Ksp22I TGATCA 1 cut(s) 283
Kzo9I GATC 3 cut(s) 283, 574, 656
LguI GCTCTTC 1 cut(s) 261
LmnI GCTCC 7 cut(s) 141, 149, 200, 323, 391, 471, 483
LweI GCATC 3 cut(s) 142, 164, 305
MaeII ACGT 1 cut(s) 243
MaeIII GTNAC 1 cut(s) 169
MalI GATC 3 cut(s) 285, 576, 658
MboI GATC 3 cut(s) 283, 574, 656
MboII GAAGA 5 cut(s) 6, 248, 395, 398, 468
MflI RGATCY 1 cut(s) 574
MhlI GDGCHC 3 cut(s) 146, 256, 665
MlsI TGGCCA 1 cut(s) 479
MluCI AATT 2 cut(s) 270, 403
MluNI TGGCCA 1 cut(s) 479
MlyI GAGTC 1 cut(s) 431
MmeI TCCRAC 2 cut(s) 89, 233
MnlI CCTC 7 cut(s) 31, 305, 322, 382, 511, 565, 582
Mox20I TGGCCA 1 cut(s) 479
Mph1103I ATGCAT 1 cut(s) 157
MscI TGGCCA 1 cut(s) 479
MseI TTAA 3 cut(s) 416, 651, 667
Msp20I TGGCCA 1 cut(s) 479
MspI CCGG 4 cut(s) 147, 494, 536, 578
MspR9I CCNGG 5 cut(s) 374, 476, 481, 494, 579
MvaI CCWGG 3 cut(s) 374, 476, 481
MvnI CGCG 2 cut(s) 121, 123
MwoI GCNNNNNNNGC 4 cut(s) 129, 347, 361, 485
NciI CCSGG 2 cut(s) 494, 579
NdeII GATC 3 cut(s) 283, 574, 656
NlaIV GGNNCC 5 cut(s) 411, 473, 567, 576, 582
NsiI ATGCAT 1 cut(s) 157
NspV TTCGAA 1 cut(s) 92
PciSI GCTCTTC 1 cut(s) 261
PcsI WCGNNNNNNNCGW 1 cut(s) 256
PkrI GCNGC 1 cut(s) 555
Ple19I CGATCG 1 cut(s) 659
PleI GAGTC 1 cut(s) 430
PpsI GAGTC 1 cut(s) 430
Psp124BI GAGCTC 1 cut(s) 146
Psp6I CCWGG 3 cut(s) 372, 474, 479
PspGI CCWGG 3 cut(s) 372, 474, 479
PspN4I GGNNCC 5 cut(s) 411, 473, 567, 576, 582
PspPI GGNCC 1 cut(s) 581
PstNI CAGNNNCTG 1 cut(s) 167
PsuI RGATCY 1 cut(s) 574
PvuI CGATCG 1 cut(s) 659
RsaI GTAC 3 cut(s) 428, 503, 602
RsaNI GTAC 3 cut(s) 427, 502, 601
SacI GAGCTC 1 cut(s) 146
SapI GCTCTTC 1 cut(s) 261
SaqAI TTAA 3 cut(s) 416, 651, 667
SatI GCNGC 1 cut(s) 554
Sau3AI GATC 3 cut(s) 283, 574, 656
Sau96I GGNCC 1 cut(s) 581
SchI GAGTC 1 cut(s) 431
ScrFI CCNGG 5 cut(s) 374, 476, 481, 494, 579
SduI GDGCHC 3 cut(s) 146, 256, 665
SfaNI GCATC 3 cut(s) 142, 164, 305
SfuI TTCGAA 1 cut(s) 92
Sse9I AATT 2 cut(s) 270, 403
SsiI CCGC 5 cut(s) 119, 123, 218, 551, 554
SstI GAGCTC 1 cut(s) 146
StyD4I CCNGG 5 cut(s) 372, 474, 479, 492, 577
TaaI ACNGT 1 cut(s) 169
TaiI ACGT 1 cut(s) 246
TaqI TCGA 3 cut(s) 92, 246, 659
TaqII GACCGA 1 cut(s) 191
TasI AATT 2 cut(s) 270, 403
TauI GCSGC 1 cut(s) 556
Tru1I TTAA 3 cut(s) 416, 651, 667
Tru9I TTAA 3 cut(s) 416, 651, 667
TscAI CASTG 1 cut(s) 564
TspDTI ATGAA 3 cut(s) 41, 465, 595
TspRI CASTG 1 cut(s) 564
XapI RAATTY 1 cut(s) 403
Zsp2I ATGCAT 1 cut(s) 157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.