pycom15g06640

strigolactone esterase DAD2

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Reverse (-)
4075670 .. 4076568
899 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 801 bp
ATGGTCAACACAATCCTCGAGGCTCTCAACGTCCGAGTCGTCGGCTCAGGCGACAGGTACGTCGTCTTCGCCCACGGCTTCGGCACCGACCAGTCCGCCTGGCAGCGCATTCTCCAGTTCTTCACGCCCTACTACCGCGTCATTCTCTACGACCTCGTCTGCGCCGGCAGCGTCAACCCGGACTACTTCGACTTCCGCCGTTACACCACCCTCGACGCCTATGTCGACGACCTCCTCAACATTCTCGACGCCCTCGGCGTCAACCACTGCGCCTATGTTGGCCACTCCGTCTCCGCCATGATCGGCATCCTCGCCTCCATCCGCCGCCCCGAACTCTTCTCCAAGCTCGTCCTCATCGGCGCTTCCCCAAGGTTCTTGAACGATGGAGATTACCATGGAGGATTCGAGCAAGAGGAGATTGAGAAAGTGTTTTCTGCAATGGAGGCGAACTACGCGGCGTGGGTCAGCGGCTTCGCGCCGCTAGCCGTCGGGGCCGACGTTCCGACGGTGGTCCGAGAATTCAGCCGGACCCTGTTCAACATGCGACCGGACATCACGCTTTTCGTGTCTCGGGCCGTATTCAACAGCGATTTGAGGGGGGTTTTGGGGCTGGTGCGGGTGCCGTGCTGCATAATCCAGACCTCGAAGGACGTGTCCGTACCGGGGTCAGTGGCGAACTACCTGAGGGACCACCTGGGCGGGCGGAACACGGTGGTGATGCTGGAAACGGAGGGACACTTGCCGCATCTGAGCGCGCCGGGTCTGCTGGCTAGGAAGCTCCGCCACGCCCTTGCGTCGTAG

Protein Analysis

267

Amino Acids

29.37

Weight (kDa)

6.23

Isoelectric Point (pI)

34.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_6 PF12697 21 - 258 2.4e-14 Alpha/beta hydrolase family
Abhydrolase_1 PF00561 21 - 132 7.1e-10 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012366)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 59, 221
AbsI CCTCGAGG 1 cut(s) 17
AccB1I GGYRCC 2 cut(s) 83, 619
AccI GTMKAC 1 cut(s) 225
AccII CGCG 4 cut(s) 138, 455, 476, 755
AcoI YGGCCR 1 cut(s) 280
AcsI RAATTY 1 cut(s) 518
AcyI GRCGYC 3 cut(s) 216, 249, 258
AfaI GTAC 2 cut(s) 59, 660
AfiI CCNNNNNNNGG 1 cut(s) 663
AflIII ACRYGT 1 cut(s) 651
AgsI TTSAA 3 cut(s) 379, 538, 583
AjiI CACGTC 1 cut(s) 652
AjnI CCWGG 2 cut(s) 98, 693
AleI CACNNNNGTG 1 cut(s) 713
AluBI AGCT 2 cut(s) 346, 778
AluI AGCT 2 cut(s) 346, 778
Alw26I GTCTC 2 cut(s) 295, 573
Ama87I CYCGRG 2 cut(s) 17, 570
AoxI GGCC 3 cut(s) 280, 492, 573
ApeKI GCWGC 3 cut(s) 103, 168, 627
ApoI RAATTY 1 cut(s) 518
ArsI GACNNNNNNTTYG 2 cut(s) 638, 670
AspLEI GCGC 7 cut(s) 108, 164, 272, 362, 478, 755, 757
AspS9I GGNCC 5 cut(s) 492, 511, 528, 573, 688
AsuC2I CCSGG 3 cut(s) 179, 663, 759
AsuHPI GGTGA 1 cut(s) 727
AsuNHI GCTAGC 1 cut(s) 481
AvaI CYCGRG 2 cut(s) 17, 570
AvaII GGWCC 3 cut(s) 511, 528, 688
AxyI CCTNAGG 1 cut(s) 683
BalI TGGCCA 1 cut(s) 282
BanI GGYRCC 2 cut(s) 83, 619
BarI GAAGNNNNNNTAC 2 cut(s) 50, 82
BbsI GAAGAC 1 cut(s) 58
BbvI GCAGC 3 cut(s) 115, 180, 614
BccI CCATC 2 cut(s) 326, 377
BceAI ACGGC 5 cut(s) 91, 183, 470, 560, 607
BciT130I CCWGG 2 cut(s) 100, 695
BcnI CCSGG 3 cut(s) 179, 663, 759
BcoDI GTCTC 2 cut(s) 295, 573
BfaI CTAG 2 cut(s) 482, 771
BfoI RGCGCY 1 cut(s) 363
BglI GCCNNNNNGGC 1 cut(s) 491
BisI GCNGC 8 cut(s) 104, 169, 325, 456, 469, 479, 628, 743
BlsI GCNGC 8 cut(s) 105, 170, 326, 457, 470, 480, 629, 744
Bme1390I CCNGG 5 cut(s) 100, 179, 663, 695, 759
Bme18I GGWCC 3 cut(s) 511, 528, 688
BmeT110I CYCGRG 2 cut(s) 17, 570
BmgBI CACGTC 1 cut(s) 652
BmgT120I GGNCC 5 cut(s) 492, 511, 528, 573, 688
BmiI GGNNCC 5 cut(s) 85, 493, 530, 621, 689
BmrFI CCNGG 5 cut(s) 100, 179, 663, 695, 759
BmsI GCATC 3 cut(s) 315, 708, 754
BmtI GCTAGC 1 cut(s) 485
BoxI GACNNNNGTC 1 cut(s) 509
BpiI GAAGAC 1 cut(s) 58
BpmI CTGGAG 1 cut(s) 98
Bpu10I CCTNAGC 1 cut(s) 46
BpuMI CCSGG 3 cut(s) 179, 663, 759
BsaBI GATNNNNATC 1 cut(s) 305
BsaHI GRCGYC 3 cut(s) 216, 249, 258
BsaJI CCNNGG 6 cut(s) 73, 253, 368, 394, 662, 694
BsaWI WCCGGW 1 cut(s) 547
BsaXI ACNNNNNCTCC 2 cut(s) 275, 305
Bsc4I CCNNNNNNNGG 1 cut(s) 663
Bse118I RCCGGY 1 cut(s) 164
Bse1I ACTGG 2 cut(s) 91, 115
Bse21I CCTNAGG 1 cut(s) 683
Bse3DI GCAATG 1 cut(s) 444
Bse8I GATNNNNATC 1 cut(s) 305
BseBI CCWGG 2 cut(s) 100, 695
BseDI CCNNGG 6 cut(s) 73, 253, 368, 394, 662, 694
BseGI GGATG 2 cut(s) 306, 318
BseJI GATNNNNATC 1 cut(s) 305
BseLI CCNNNNNNNGG 1 cut(s) 663
BseMI GCAATG 1 cut(s) 444
BseMII CTCAG 3 cut(s) 60, 674, 740
BseNI ACTGG 2 cut(s) 91, 115
BsePI GCGCGC 1 cut(s) 753
BseRI GAGGAG 2 cut(s) 224, 428
BseXI GCAGC 3 cut(s) 115, 180, 614
Bsh1236I CGCG 4 cut(s) 138, 455, 476, 755
Bsh1285I CGRYCG 1 cut(s) 548
BshFI GGCC 3 cut(s) 282, 494, 575
BshNI GGYRCC 2 cut(s) 83, 619
BsiEI CGRYCG 1 cut(s) 548
BsiHKCI CYCGRG 2 cut(s) 17, 570
BsiSI CCGG 6 cut(s) 165, 179, 526, 548, 662, 758
BslFI GGGAC 2 cut(s) 701, 747
BslI CCNNNNNNNGG 1 cut(s) 663
BsmAI GTCTC 2 cut(s) 295, 573
BsmBI CGTCTC 1 cut(s) 295
BsmFI GGGAC 2 cut(s) 701, 747
BsmI GAATGC 1 cut(s) 108
BsnI GGCC 3 cut(s) 282, 494, 575
BsoBI CYCGRG 2 cut(s) 17, 570
Bsp143I GATC 1 cut(s) 300
Bsp19I CCATGG 1 cut(s) 394
BspANI GGCC 3 cut(s) 282, 494, 575
BspCNI CTCAG 3 cut(s) 59, 675, 741
BspFNI CGCG 4 cut(s) 138, 455, 476, 755
BspLI GGNNCC 5 cut(s) 85, 493, 530, 621, 689
BspOI GCTAGC 1 cut(s) 485
BspT107I GGYRCC 2 cut(s) 83, 619
BsrDI GCAATG 1 cut(s) 444
BsrFI RCCGGY 1 cut(s) 164
BsrI ACTGG 2 cut(s) 91, 115
BssAI RCCGGY 1 cut(s) 164
BssECI CCNNGG 6 cut(s) 73, 253, 368, 394, 662, 694
BssHII GCGCGC 1 cut(s) 753
BssMI GATC 1 cut(s) 300
BssNI GRCGYC 3 cut(s) 216, 249, 258
BssT1I CCWWGG 2 cut(s) 368, 394
Bst2UI CCWGG 2 cut(s) 100, 695
Bst4CI ACNGT 2 cut(s) 508, 712
Bst6I CTCTTC 1 cut(s) 341
BstACI GRCGYC 3 cut(s) 216, 249, 258
BstC8I GCNNGC 5 cut(s) 166, 483, 701, 755, 768
BstDEI CTNAG 3 cut(s) 46, 683, 749
BstDSI CCRYGG 2 cut(s) 73, 394
BstF5I GGATG 2 cut(s) 306, 318
BstFNI CGCG 4 cut(s) 138, 455, 476, 755
BstH2I RGCGCY 1 cut(s) 363
BstHHI GCGC 7 cut(s) 108, 164, 272, 362, 478, 755, 757
BstKTI GATC 1 cut(s) 303
BstMAI GTCTC 2 cut(s) 295, 573
BstMBI GATC 1 cut(s) 300
BstMCI CGRYCG 1 cut(s) 548
BstMWI GCNNNNNNNGC 6 cut(s) 168, 443, 452, 482, 491, 763
BstNI CCWGG 2 cut(s) 100, 695
BstNSI RCATGY 1 cut(s) 544
BstPAI GACNNNNGTC 1 cut(s) 509
BstSCI CCNGG 5 cut(s) 98, 177, 661, 693, 757
BstUI CGCG 4 cut(s) 138, 455, 476, 755
BstV1I GCAGC 3 cut(s) 115, 180, 614
BstV2I GAAGAC 1 cut(s) 58
Bsu36I CCTNAGG 1 cut(s) 683
BsuRI GGCC 3 cut(s) 282, 494, 575
BtgI CCRYGG 2 cut(s) 73, 394
BtrI CACGTC 1 cut(s) 652
BtsCI GGATG 2 cut(s) 306, 318
BtsI GCAGTG 1 cut(s) 265
BtsIMutI CAGTG 2 cut(s) 265, 675
Cac8I GCNNGC 5 cut(s) 166, 483, 701, 755, 768
CfoI GCGC 7 cut(s) 108, 164, 272, 362, 478, 755, 757
Cfr10I RCCGGY 1 cut(s) 164
Cfr13I GGNCC 5 cut(s) 492, 511, 528, 573, 688
CseI GACGC 6 cut(s) 127, 160, 224, 247, 257, 783
Csp6I GTAC 2 cut(s) 58, 659
CviAII CATG 3 cut(s) 298, 395, 541
CviQI GTAC 2 cut(s) 58, 659
DdeI CTNAG 3 cut(s) 46, 683, 749
DpnI GATC 1 cut(s) 302
DpnII GATC 1 cut(s) 300
DrdI GACNNNNNNGTC 2 cut(s) 59, 221
DseDI GACNNNNNNGTC 2 cut(s) 59, 221
EaeI YGGCCR 1 cut(s) 280
Eam1104I CTCTTC 1 cut(s) 341
EarI CTCTTC 1 cut(s) 341
EciI GGCGGA 6 cut(s) 85, 185, 283, 311, 718, 770
Eco130I CCWWGG 2 cut(s) 368, 394
Eco47I GGWCC 3 cut(s) 511, 528, 688
Eco81I CCTNAGG 1 cut(s) 683
Eco88I CYCGRG 2 cut(s) 17, 570
EcoRI GAATTC 1 cut(s) 518
EcoRII CCWGG 2 cut(s) 98, 693
EcoT14I CCWWGG 2 cut(s) 368, 394
ErhI CCWWGG 2 cut(s) 368, 394
Esp3I CGTCTC 1 cut(s) 295
FaeI CATG 3 cut(s) 301, 398, 544
FaiI YATR 6 cut(s) 222, 276, 299, 396, 542, 632
FaqI GGGAC 2 cut(s) 701, 747
FatI CATG 3 cut(s) 297, 394, 540
FauI CCCGC 2 cut(s) 609, 692
FblI GTMKAC 1 cut(s) 225
Fnu4HI GCNGC 8 cut(s) 104, 169, 325, 456, 469, 479, 628, 743
FokI GGATG 2 cut(s) 293, 305
Fsp4HI GCNGC 8 cut(s) 104, 169, 325, 456, 469, 479, 628, 743
FspBI CTAG 2 cut(s) 482, 771
GlaI GCGC 7 cut(s) 107, 163, 271, 361, 477, 754, 756
GluI GCNGC 8 cut(s) 104, 169, 325, 456, 469, 479, 628, 743
GsuI CTGGAG 1 cut(s) 98
HaeII RGCGCY 1 cut(s) 363
HaeIII GGCC 3 cut(s) 282, 494, 575
HapII CCGG 6 cut(s) 165, 179, 526, 548, 662, 758
HgaI GACGC 6 cut(s) 127, 160, 224, 247, 257, 783
HhaI GCGC 7 cut(s) 108, 164, 272, 362, 478, 755, 757
Hin1I GRCGYC 3 cut(s) 216, 249, 258
Hin1II CATG 3 cut(s) 301, 398, 544
Hin6I GCGC 7 cut(s) 106, 162, 270, 360, 476, 753, 755
HinP1I GCGC 7 cut(s) 106, 162, 270, 360, 476, 753, 755
HincII GTYRAC 4 cut(s) 7, 175, 226, 262
HindII GTYRAC 4 cut(s) 7, 175, 226, 262
HinfI GANTC 2 cut(s) 36, 402
HpaII CCGG 6 cut(s) 165, 179, 526, 548, 662, 758
HphI GGTGA 1 cut(s) 727
Hpy166II GTNNAC 4 cut(s) 7, 175, 226, 262
Hpy188I TCNGA 4 cut(s) 35, 504, 515, 750
Hpy188III TCNNGA 3 cut(s) 245, 376, 637
Hpy8I GTNNAC 4 cut(s) 7, 175, 226, 262
Hpy99I CGWCG 9 cut(s) 44, 65, 218, 230, 251, 491, 500, 508, 799
HpyAV CCTTC 1 cut(s) 640
HpyCH4III ACNGT 2 cut(s) 508, 712
HpyCH4IV ACGT 4 cut(s) 30, 60, 498, 651
HpyCH4V TGCA 2 cut(s) 437, 630
HpyF10VI GCNNNNNNNGC 6 cut(s) 168, 443, 452, 482, 491, 763
HpyF3I CTNAG 3 cut(s) 46, 683, 749
HpySE526I ACGT 4 cut(s) 30, 60, 498, 651
Hsp92I GRCGYC 3 cut(s) 216, 249, 258
Hsp92II CATG 3 cut(s) 301, 398, 544
HspAI GCGC 7 cut(s) 106, 162, 270, 360, 476, 753, 755
KroI GCCGGC 1 cut(s) 164
KroNI GCCGGC 1 cut(s) 166
Kzo9I GATC 1 cut(s) 300
LmnI GCTCC 1 cut(s) 783
Lsp1109I GCAGC 3 cut(s) 115, 180, 614
LweI GCATC 3 cut(s) 315, 708, 754
MaeI CTAG 2 cut(s) 482, 771
MaeII ACGT 4 cut(s) 30, 60, 498, 651
MaeIII GTNAC 1 cut(s) 200
MalI GATC 1 cut(s) 302
MboI GATC 1 cut(s) 300
MboII GAAGA 3 cut(s) 58, 112, 328
MlsI TGGCCA 1 cut(s) 282
MluCI AATT 1 cut(s) 518
MluNI TGGCCA 1 cut(s) 282
MlyI GAGTC 1 cut(s) 45
MmeI TCCRAC 1 cut(s) 527
Mox20I TGGCCA 1 cut(s) 282
MroNI GCCGGC 1 cut(s) 164
MscI TGGCCA 1 cut(s) 282
MslI CAYNNNNRTG 1 cut(s) 713
Msp20I TGGCCA 1 cut(s) 282
MspA1I CMGCKG 1 cut(s) 468
MspI CCGG 6 cut(s) 165, 179, 526, 548, 662, 758
MspR9I CCNGG 5 cut(s) 100, 179, 663, 695, 759
Mva1269I GAATGC 1 cut(s) 108
MvaI CCWGG 2 cut(s) 100, 695
MvnI CGCG 4 cut(s) 138, 455, 476, 755
MwoI GCNNNNNNNGC 6 cut(s) 168, 443, 452, 482, 491, 763
NaeI GCCGGC 1 cut(s) 166
NciI CCSGG 3 cut(s) 179, 663, 759
NcoI CCATGG 1 cut(s) 394
NdeII GATC 1 cut(s) 300
NgoMIV GCCGGC 1 cut(s) 164
NheI GCTAGC 1 cut(s) 481
NlaIII CATG 3 cut(s) 301, 398, 544
NlaIV GGNNCC 5 cut(s) 85, 493, 530, 621, 689
NmeAIII GCCGAG 1 cut(s) 234
NspI RCATGY 1 cut(s) 544
OliI CACNNNNGTG 1 cut(s) 713
PaeR7I CTCGAG 1 cut(s) 17
PauI GCGCGC 1 cut(s) 753
PcsI WCGNNNNNNNCGW 5 cut(s) 36, 48, 222, 255, 495
PctI GAATGC 1 cut(s) 108
PdiI GCCGGC 1 cut(s) 166
PfeI GAWTC 1 cut(s) 402
PflFI GACNNNGTC 1 cut(s) 155
PkrI GCNGC 8 cut(s) 105, 170, 326, 457, 470, 480, 629, 744
PleI GAGTC 1 cut(s) 44
PpsI GAGTC 1 cut(s) 44
PshAI GACNNNNGTC 1 cut(s) 509
Psp6I CCWGG 2 cut(s) 98, 693
PspGI CCWGG 2 cut(s) 98, 693
PspN4I GGNNCC 5 cut(s) 85, 493, 530, 621, 689
PspPI GGNCC 5 cut(s) 492, 511, 528, 573, 688
PspXI VCTCGAGB 1 cut(s) 17
PsyI GACNNNGTC 1 cut(s) 155
PteI GCGCGC 1 cut(s) 753
RsaI GTAC 2 cut(s) 59, 660
RsaNI GTAC 2 cut(s) 58, 659
RseI CAYNNNNRTG 1 cut(s) 713
SalI GTCGAC 1 cut(s) 224
SatI GCNGC 8 cut(s) 104, 169, 325, 456, 469, 479, 628, 743
Sau3AI GATC 1 cut(s) 300
Sau96I GGNCC 5 cut(s) 492, 511, 528, 573, 688
SchI GAGTC 1 cut(s) 45
ScrFI CCNGG 5 cut(s) 100, 179, 663, 695, 759
SfaNI GCATC 3 cut(s) 315, 708, 754
Sfr274I CTCGAG 1 cut(s) 17
SinI GGWCC 3 cut(s) 511, 528, 688
SlaI CTCGAG 1 cut(s) 17
SmiMI CAYNNNNRTG 1 cut(s) 713
SmlI CTYRAG 1 cut(s) 17
SmoI CTYRAG 1 cut(s) 17
Sse9I AATT 1 cut(s) 518
SspMI CTAG 2 cut(s) 482, 771
StyD4I CCNGG 5 cut(s) 98, 177, 661, 693, 757
StyI CCWWGG 2 cut(s) 368, 394
TaaI ACNGT 2 cut(s) 508, 712
TaiI ACGT 4 cut(s) 33, 63, 501, 654
TaqI TCGA 7 cut(s) 18, 189, 213, 225, 246, 405, 644
TasI AATT 1 cut(s) 518
TauI GCSGC 5 cut(s) 327, 458, 471, 481, 745
TfiI GAWTC 1 cut(s) 402
TscAI CASTG 2 cut(s) 272, 675
TseI GCWGC 3 cut(s) 103, 168, 627
TspGWI ACGGA 3 cut(s) 277, 646, 743
TspRI CASTG 2 cut(s) 272, 675
Tth111I GACNNNGTC 1 cut(s) 155
VpaK11BI GGWCC 3 cut(s) 511, 528, 688
XapI RAATTY 1 cut(s) 518
XceI RCATGY 1 cut(s) 544
XhoI CTCGAG 1 cut(s) 17
XmiI GTMKAC 1 cut(s) 225
XspI CTAG 2 cut(s) 482, 771
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.