pycom15g07220
MYB Family

bHLH-MYC and R2R3-MYB transcription factors N-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0014672
Physical Location & Seq
Forward (+)
4425851 .. 4427650
1800 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1113 bp
ATGGAAACTGGACTTCCCATGTTTAATTGTCTCTTGCAGCACACGCTGAGGAACCTCTGTTCATGTTCAGATTCTTCTTCCAATCCTTCCAAATGGGTTTATGCTGTCTTCTGGAGAATCTTGCCTCGGAACTATCCTCCCCCAAAGTGGGATTATGGAGGGAGTGCTCTTGATCGATCCAAAGGAAACGAACGGAACTGGATTCTTGTTTGGGAAGATGGGTTCTGTGATTTCTATGAATGTGAGCAAGCAGGAAGTGGGTACATCAAGGGGAGGTTTGGAGCTGATGTCTTCTTCAAAATGTCACATGAAGTCTACAATCTTGGAGAAGGATTAGTGGGGAAAGTAGCGGCAGAAAATAGTCACAAATGGGTGTTCAGAGATGCACCAAATGACGGTGATCCTACCTTCATTTCCTCCTGGAATGCATCCACTGAACCTCAACCAAGGGCATGGGAATTTCAATTCCAATCAGGCATACAGACCATTGCAATCATTTCTGTTAGAGAAGGCATAATTCAACTTGGCTCCTTCGATAAGATATTGGAAGATCTTAATCTTGTGATCAGCATACAAAGGAAACTCAGCTACCTCCAGAGCATACCAGGAGTTTTTGCCATGCAAAGACCTTACCTACCAATCCAACATCCCTACATCCTCAAACCAAATCCTCAGATGATTGCAAACCATGATCAAACAGCTTTATCAGTCTACGAAAAGCGCCAACTGACCGGCGCGAAAAGATTGTTCAACGAAGTCCCTGATGATTCCCAAACCAAGTCCATAAACTTGGGCTGGAACACCCCACAAAATGGACTTCCAGGATCACCACCTTCGCCAATTCTTCCTCTTCTGCCCTCTATTTCTTGCAGCCTTGGAGCTCTACTGTCGAAGCTACCTTCGGTTAATATCCCATGCTATAATTCTGGTGAAGCTCCTGACAGAGAAATGCTTATGAACAACATGAGCAACAGTGGCAACAATTGTGCAGACCAGATGCTGAAGGTTAGTGGTGGCATTACGAAAATAGAGCCATCCTGTCACTCGGATGTAGCTAATGAAGAAAAGCACAGTTCCATAAACCCTAATTTGGGTTTAGAAAATGAGGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bHLH-MYC_N

Protein Analysis

371

Amino Acids

41.19

Weight (kDa)

5.57

Isoelectric Point (pI)

47.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH-MYC_N PF14215 12 - 192 3.7e-25 bHLH-MYC and R2R3-MYB transcription factors N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014672)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g33720 FvH4_2g33720
malus_domestica MD08G1093800.v1.1
prunus_persica Prupe.1G430900_v2.0.a1 Prupe.1G430900_v2.0.a1 Prupe.1G430900_v2.0.a1
pyrus_communis pycom15g07220
rosa_chinensis RchiOBHm_Chr6g0308831
rosa_laevigata RLG00000010614
rosa_multiflora Rmu_sc0004046.1_g000008
rosa_roxburghii Rroxscaffold_7G00159880
rosa_rugosa Rorug06G0368400.1
rosa_samantha Rh6AG479900 Rh6BG489400 Rh6CG494900 Rh6DG480200
rosa_wichuraiana Rw6G041840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 812
AccI GTMKAC 2 cut(s) 315, 711
AccII CGCG 1 cut(s) 737
AciI CCGC 1 cut(s) 350
AclWI GGATC 3 cut(s) 171, 395, 832
AcsI RAATTY 1 cut(s) 458
AcuI CTGAAG 1 cut(s) 1022
AfaI GTAC 1 cut(s) 263
AfiI CCNNNNNNNGG 6 cut(s) 147, 148, 395, 812, 1090, 1091
AgsI TTSAA 4 cut(s) 298, 464, 521, 751
AjnI CCWGG 3 cut(s) 419, 604, 820
AloI GAACNNNNNNTCC 4 cut(s) 43, 75, 206, 238
AluBI AGCT 7 cut(s) 284, 588, 701, 881, 895, 935, 1055
AluI AGCT 7 cut(s) 284, 588, 701, 881, 895, 935, 1055
Alw21I GWGCWC 2 cut(s) 169, 883
Alw26I GTCTC 1 cut(s) 35
AlwI GGATC 3 cut(s) 171, 395, 832
AlwNI CAGNNNCTG 1 cut(s) 1000
ApeKI GCWGC 2 cut(s) 37, 870
ApoI RAATTY 1 cut(s) 458
AspLEI GCGC 2 cut(s) 723, 737
AsuHPI GGTGA 3 cut(s) 410, 819, 941
BanII GRGCYC 1 cut(s) 883
BbsI GAAGAC 2 cut(s) 100, 283
Bbv12I GWGCWC 2 cut(s) 169, 883
BbvCI CCTCAGC 1 cut(s) 47
BbvI GCAGC 2 cut(s) 49, 882
BccI CCATC 2 cut(s) 212, 1042
BciT130I CCWGG 3 cut(s) 421, 606, 822
BclI TGATCA 2 cut(s) 564, 691
BcoDI GTCTC 1 cut(s) 35
BfoI RGCGCY 1 cut(s) 724
BglII AGATCT 1 cut(s) 550
BisI GCNGC 3 cut(s) 38, 351, 871
BlsI GCNGC 3 cut(s) 39, 352, 872
Bme1390I CCNGG 3 cut(s) 421, 606, 822
BmiI GGNNCC 2 cut(s) 53, 529
BmrFI CCNGG 3 cut(s) 421, 606, 822
BmsI GCATC 3 cut(s) 373, 437, 987
BpiI GAAGAC 2 cut(s) 100, 283
BpmI CTGGAG 2 cut(s) 133, 578
Bpu10I CCTNAGC 1 cut(s) 47
Bsa29I ATCGAT 1 cut(s) 175
BsaBI GATNNNNATC 1 cut(s) 555
BsaJI CCNNGG 3 cut(s) 125, 446, 874
BsaXI ACNNNNNCTCC 2 cut(s) 273, 303
Bsc4I CCNNNNNNNGG 6 cut(s) 147, 148, 395, 812, 1090, 1091
Bse118I RCCGGY 1 cut(s) 731
Bse1I ACTGG 2 cut(s) 13, 203
Bse3DI GCAATG 1 cut(s) 486
Bse8I GATNNNNATC 1 cut(s) 555
BseBI CCWGG 3 cut(s) 421, 606, 822
BseCI ATCGAT 1 cut(s) 175
BseDI CCNNGG 3 cut(s) 125, 446, 874
BseGI GGATG 5 cut(s) 428, 646, 654, 1034, 1054
BseJI GATNNNNATC 1 cut(s) 555
BseLI CCNNNNNNNGG 6 cut(s) 147, 148, 395, 812, 1090, 1091
BseMI GCAATG 1 cut(s) 486
BseMII CTCAG 3 cut(s) 38, 598, 686
BseNI ACTGG 2 cut(s) 13, 203
BseXI GCAGC 2 cut(s) 49, 882
BsgI GTGCAG 1 cut(s) 1008
Bsh1236I CGCG 1 cut(s) 737
BshVI ATCGAT 1 cut(s) 175
BsiHKAI GWGCWC 2 cut(s) 169, 883
BsiSI CCGG 1 cut(s) 732
BslFI GGGAC 1 cut(s) 743
BslI CCNNNNNNNGG 6 cut(s) 147, 148, 395, 812, 1090, 1091
BsmAI GTCTC 1 cut(s) 35
BsmFI GGGAC 1 cut(s) 743
BsmI GAATGC 1 cut(s) 430
Bsp1286I GDGCHC 2 cut(s) 169, 883
Bsp143I GATC 7 cut(s) 172, 176, 400, 550, 564, 691, 824
BspACI CCGC 1 cut(s) 350
BspCNI CTCAG 3 cut(s) 39, 597, 685
BspDI ATCGAT 1 cut(s) 175
BspFNI CGCG 1 cut(s) 737
BspLI GGNNCC 2 cut(s) 53, 529
BspPI GGATC 3 cut(s) 171, 395, 832
BsrDI GCAATG 1 cut(s) 486
BsrFI RCCGGY 1 cut(s) 731
BsrI ACTGG 2 cut(s) 13, 203
BssAI RCCGGY 1 cut(s) 731
BssECI CCNNGG 3 cut(s) 125, 446, 874
BssMI GATC 7 cut(s) 172, 176, 400, 550, 564, 691, 824
BssT1I CCWWGG 2 cut(s) 446, 874
Bst2UI CCWGG 3 cut(s) 421, 606, 822
Bst4CI ACNGT 4 cut(s) 398, 888, 974, 1073
Bst6I CTCTTC 1 cut(s) 855
BstC8I GCNNGC 1 cut(s) 249
BstDEI CTNAG 3 cut(s) 47, 584, 672
BstF5I GGATG 5 cut(s) 428, 646, 654, 1034, 1054
BstFNI CGCG 1 cut(s) 737
BstH2I RGCGCY 1 cut(s) 724
BstHHI GCGC 2 cut(s) 723, 737
BstKTI GATC 7 cut(s) 175, 179, 403, 553, 567, 694, 827
BstMAI GTCTC 1 cut(s) 35
BstMBI GATC 7 cut(s) 172, 176, 400, 550, 564, 691, 824
BstMWI GCNNNNNNNGC 2 cut(s) 43, 975
BstNI CCWGG 3 cut(s) 421, 606, 822
BstSCI CCNGG 3 cut(s) 419, 604, 820
BstUI CGCG 1 cut(s) 737
BstV1I GCAGC 2 cut(s) 49, 882
BstV2I GAAGAC 2 cut(s) 100, 283
BstX2I RGATCY 1 cut(s) 550
BstXI CCANNNNNNTGG 2 cut(s) 453, 790
BstYI RGATCY 1 cut(s) 550
Bsu15I ATCGAT 1 cut(s) 175
BsuTUI ATCGAT 1 cut(s) 175
BtsCI GGATG 5 cut(s) 428, 646, 654, 1034, 1054
BtsIMutI CAGTG 2 cut(s) 432, 979
Cac8I GCNNGC 1 cut(s) 249
CaiI CAGNNNCTG 1 cut(s) 1000
CfoI GCGC 2 cut(s) 723, 737
Cfr10I RCCGGY 1 cut(s) 731
ClaI ATCGAT 1 cut(s) 175
Csp6I GTAC 1 cut(s) 262
CviAII CATG 8 cut(s) 19, 63, 308, 453, 619, 689, 915, 964
CviQI GTAC 1 cut(s) 262
DdeI CTNAG 3 cut(s) 47, 584, 672
DpnI GATC 7 cut(s) 174, 178, 402, 552, 566, 693, 826
DpnII GATC 7 cut(s) 172, 176, 400, 550, 564, 691, 824
Eam1104I CTCTTC 1 cut(s) 855
EarI CTCTTC 1 cut(s) 855
Ecl136II GAGCTC 1 cut(s) 881
Eco130I CCWWGG 2 cut(s) 446, 874
Eco24I GRGCYC 1 cut(s) 883
Eco53kI GAGCTC 1 cut(s) 881
Eco57I CTGAAG 1 cut(s) 1022
EcoICRI GAGCTC 1 cut(s) 881
EcoRII CCWGG 3 cut(s) 419, 604, 820
EcoT14I CCWWGG 2 cut(s) 446, 874
EcoT22I ATGCAT 1 cut(s) 430
EcoT38I GRGCYC 1 cut(s) 883
ErhI CCWWGG 2 cut(s) 446, 874
FaeI CATG 8 cut(s) 22, 66, 311, 456, 622, 692, 918, 967
FaqI GGGAC 1 cut(s) 743
FatI CATG 8 cut(s) 18, 62, 307, 452, 618, 688, 914, 963
FbaI TGATCA 2 cut(s) 564, 691
FblI GTMKAC 2 cut(s) 315, 711
Fnu4HI GCNGC 3 cut(s) 38, 351, 871
FokI GGATG 5 cut(s) 415, 633, 641, 1021, 1061
FriOI GRGCYC 1 cut(s) 883
Fsp4HI GCNGC 3 cut(s) 38, 351, 871
GlaI GCGC 2 cut(s) 722, 736
GluI GCNGC 3 cut(s) 38, 351, 871
GsuI CTGGAG 2 cut(s) 133, 578
HaeII RGCGCY 1 cut(s) 724
HapII CCGG 1 cut(s) 732
HhaI GCGC 2 cut(s) 723, 737
Hin1II CATG 8 cut(s) 22, 66, 311, 456, 622, 692, 918, 967
Hin6I GCGC 2 cut(s) 721, 735
HinP1I GCGC 2 cut(s) 721, 735
HinfI GANTC 4 cut(s) 71, 117, 202, 767
HpaII CCGG 1 cut(s) 732
HphI GGTGA 3 cut(s) 410, 819, 941
Hpy166II GTNNAC 2 cut(s) 316, 712
Hpy188I TCNGA 5 cut(s) 70, 129, 380, 675, 1048
Hpy188III TCNNGA 4 cut(s) 112, 170, 595, 938
Hpy8I GTNNAC 2 cut(s) 316, 712
HpyAV CCTTC 8 cut(s) 96, 323, 418, 503, 541, 843, 909, 997
HpyCH4III ACNGT 4 cut(s) 398, 888, 974, 1073
HpyCH4V TGCA 8 cut(s) 37, 386, 428, 491, 622, 683, 870, 989
HpyF10VI GCNNNNNNNGC 2 cut(s) 43, 975
HpyF3I CTNAG 3 cut(s) 47, 584, 672
Hsp92II CATG 8 cut(s) 22, 66, 311, 456, 622, 692, 918, 967
HspAI GCGC 2 cut(s) 721, 735
Ksp22I TGATCA 2 cut(s) 564, 691
Kzo9I GATC 7 cut(s) 172, 176, 400, 550, 564, 691, 824
LmnI GCTCC 4 cut(s) 281, 533, 878, 940
Lsp1109I GCAGC 2 cut(s) 49, 882
LweI GCATC 3 cut(s) 373, 437, 987
MaeIII GTNAC 3 cut(s) 303, 362, 1040
MalI GATC 7 cut(s) 174, 178, 402, 552, 566, 693, 826
MboI GATC 7 cut(s) 172, 176, 400, 550, 564, 691, 824
MfeI CAATTG 1 cut(s) 982
MflI RGATCY 1 cut(s) 550
MhlI GDGCHC 2 cut(s) 169, 883
MluCI AATT 8 cut(s) 25, 458, 464, 516, 840, 922, 982, 1087
MmeI TCCRAC 1 cut(s) 667
Mph1103I ATGCAT 1 cut(s) 430
MseI TTAA 3 cut(s) 24, 555, 906
MslI CAYNNNNRTG 1 cut(s) 1047
MspI CCGG 1 cut(s) 732
MspR9I CCNGG 3 cut(s) 421, 606, 822
MunI CAATTG 1 cut(s) 982
Mva1269I GAATGC 1 cut(s) 430
MvaI CCWGG 3 cut(s) 421, 606, 822
MvnI CGCG 1 cut(s) 737
MwoI GCNNNNNNNGC 2 cut(s) 43, 975
NdeII GATC 7 cut(s) 172, 176, 400, 550, 564, 691, 824
NlaIII CATG 8 cut(s) 22, 66, 311, 456, 622, 692, 918, 967
NlaIV GGNNCC 2 cut(s) 53, 529
NmuCI GTSAC 3 cut(s) 303, 362, 1040
NsiI ATGCAT 1 cut(s) 430
PctI GAATGC 1 cut(s) 430
PfeI GAWTC 4 cut(s) 71, 117, 202, 767
PflMI CCANNNNNTGG 1 cut(s) 812
PfoI TCCNGGA 2 cut(s) 419, 820
PkrI GCNGC 3 cut(s) 39, 352, 872
Psp124BI GAGCTC 1 cut(s) 883
Psp6I CCWGG 3 cut(s) 419, 604, 820
PspGI CCWGG 3 cut(s) 419, 604, 820
PspN4I GGNNCC 2 cut(s) 53, 529
PstNI CAGNNNCTG 1 cut(s) 1000
PsuI RGATCY 1 cut(s) 550
RsaI GTAC 1 cut(s) 263
RsaNI GTAC 1 cut(s) 262
RseI CAYNNNNRTG 1 cut(s) 1047
SacI GAGCTC 1 cut(s) 883
SaqAI TTAA 3 cut(s) 24, 555, 906
SatI GCNGC 3 cut(s) 38, 351, 871
Sau3AI GATC 7 cut(s) 172, 176, 400, 550, 564, 691, 824
ScrFI CCNGG 3 cut(s) 421, 606, 822
SduI GDGCHC 2 cut(s) 169, 883
SfaNI GCATC 3 cut(s) 373, 437, 987
SmiMI CAYNNNNRTG 1 cut(s) 1047
Sse9I AATT 8 cut(s) 25, 458, 464, 516, 840, 922, 982, 1087
SsiI CCGC 1 cut(s) 350
SstI GAGCTC 1 cut(s) 883
StyD4I CCNGG 3 cut(s) 419, 604, 820
StyI CCWWGG 2 cut(s) 446, 874
TaaI ACNGT 4 cut(s) 398, 888, 974, 1073
TaqI TCGA 3 cut(s) 175, 534, 890
TasI AATT 8 cut(s) 25, 458, 464, 516, 840, 922, 982, 1087
TauI GCSGC 1 cut(s) 353
TfiI GAWTC 4 cut(s) 71, 117, 202, 767
Tru1I TTAA 3 cut(s) 24, 555, 906
Tru9I TTAA 3 cut(s) 24, 555, 906
TscAI CASTG 2 cut(s) 439, 979
TseFI GTSAC 3 cut(s) 303, 362, 1040
TseI GCWGC 2 cut(s) 37, 870
Tsp45I GTSAC 3 cut(s) 303, 362, 1040
TspDTI ATGAA 6 cut(s) 51, 252, 324, 400, 971, 1074
TspGWI ACGGA 1 cut(s) 208
TspRI CASTG 2 cut(s) 439, 979
Van91I CCANNNNNTGG 1 cut(s) 812
XapI RAATTY 1 cut(s) 458
XmiI GTMKAC 2 cut(s) 315, 711
Zsp2I ATGCAT 1 cut(s) 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.