Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0005367

Physical Location & Seq

Genomic Coordinates Reverse (-)

5076422 .. 5077598

Gene Structure 1177 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGGGTCAGATGTGCAGTCCGTTGGTTTTCTAGATACCTTAAAAATGGAGAGGGTTAGGACAATTCTAACCCATACATATCCTTATCCGCATGAACATTCCCGTCATGCCGTAATTGCTGTTGTTGTCGGTTGCCTCTTTTTTATCTCATCCGACAACATCAACACCCTTATAGAAAAGTTAGACAACAATATTAAATGGTGGTCTATGTATGCATGCTTGCTGGGTTTCTTCTATTTCTTTTCGTCCCCATTTATAGGGAAGACTATCAAACCGAGCTATTCAAATTTCAGTAGGTGGTATATACTCTGGATTCTAGTTGCGGCTGTCTATCATCTTCCTAGTTTTCAATCAATGGGAGTTGATATGAGGATGAATCTGTCTTTGGGCTTTAATGTATTTGTCACTTCTGTTTTGTTTCTTCTTTTCTTCCACATTATATTCATTGGCCTTTGGTACATTGGTCTCGTGTCGCGTGTTGCTGGAAGGAGGCCAGCAATTTTGACCATTCTCCAAAATTGTGCTGTTCTTAGCGTAGCCTGCTGTGTGTTTTATAGTCATTGTGGCAACCGTGCTATTCTGAGAGATAGACAACTGGTGCGACGAAACTCTTGGTTTAATTTCTGGAAGAAAGATGAGAGGAACACATGGCTTTCGAAGTTCCTCCGAATGAATGAGTTGAAAGATCGATCTGCTCATCTTGGTTTGCTCCAGTTGGATCTGCAAGTGATTATCCACTTTTGTCCAAATGGGTCATTTATGGTGAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos

Protein Analysis

257

Amino Acids

29.78

Weight (kDa)

9.53

Isoelectric Point (pI)

55.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005367)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11800 AT4G23000 AT4G23000
fragaria_vesca	FvH4_2g34860 FvH4_2g34860 FvH4_2g34860 FvH4_2g34860 FvH4_2g34860 FvH4_2g34860 FvH4_2g34860
malus_domestica	MD00G1187500.v1.1 MD08G1106200.v1.1 MD15G1086800.v1.1
prunus_persica	Prupe.1G440500_v2.0.a1 Prupe.1G440500_v2.0.a1
pyrus_communis	pycom08g08730 pycom15g08170
rosa_chinensis	RchiOBHm_Chr6g0307181
rosa_laevigata	RLG00000010729
rosa_multiflora	Rmu_sc0000031.1_g000003
rosa_roxburghii	Rroxscaffold_7G00161100
rosa_rugosa	Rorug06G0357300 Rorug06G0357400 Rorug06G0357500
rosa_samantha	Rh6AG468100 Rh6BG432400 Rh6CG483300 Rh6DG469800
rosa_wichuraiana	Rw6G040790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	475
AciI	CCGC	2 cut(s)	89, 323
AclWI	GGATC	1 cut(s)	726
AcsI	RAATTY	1 cut(s)	286
AfaI	GTAC	1 cut(s)	458
AfiI	CCNNNNNNNGG	1 cut(s)	257
AgsI	TTSAA	3 cut(s)	285, 350, 682
AjuI	GAANNNNNNNTTGG	2 cut(s)	368, 400
AluBI	AGCT	1 cut(s)	279
AluI	AGCT	1 cut(s)	279
Alw26I	GTCTC	1 cut(s)	470
AlwI	GGATC	1 cut(s)	726
AoxI	GGCC	2 cut(s)	448, 491
ApoI	RAATTY	1 cut(s)	286
AsuII	TTCGAA	1 cut(s)	656
BaeI	ACNNNNGTAYC	2 cut(s)	448, 481
BauI	CACGAG	1 cut(s)	467
BbsI	GAAGAC	1 cut(s)	269
BceAI	ACGGC	1 cut(s)	95
BcoDI	GTCTC	1 cut(s)	470
BfaI	CTAG	3 cut(s)	32, 317, 342
BisI	GCNGC	1 cut(s)	324
BlsI	GCNGC	1 cut(s)	325
BpiI	GAAGAC	1 cut(s)	269
BpmI	CTGGAG	1 cut(s)	695
Bpu14I	TTCGAA	1 cut(s)	656
Bsa29I	ATCGAT	1 cut(s)	688
BsaI	GGTCTC	1 cut(s)	470
Bsc4I	CCNNNNNNNGG	1 cut(s)	257
Bse1I	ACTGG	2 cut(s)	600, 712
BseCI	ATCGAT	1 cut(s)	688
BseGI	GGATG	2 cut(s)	149, 378
BseLI	CCNNNNNNNGG	1 cut(s)	257
BseMII	CTCAG	1 cut(s)	572
BseNI	ACTGG	2 cut(s)	600, 712
BseYI	CCCAGC	1 cut(s)	223
BsgI	GTGCAG	1 cut(s)	35
Bsh1236I	CGCG	1 cut(s)	475
BshFI	GGCC	2 cut(s)	450, 493
BshVI	ATCGAT	1 cut(s)	688
BslFI	GGGAC	1 cut(s)	232
BslI	CCNNNNNNNGG	1 cut(s)	257
BsmAI	GTCTC	1 cut(s)	470
BsmFI	GGGAC	1 cut(s)	232
BsnI	GGCC	2 cut(s)	450, 493
Bso31I	GGTCTC	1 cut(s)	470
Bsp119I	TTCGAA	1 cut(s)	656
Bsp143I	GATC	3 cut(s)	685, 689, 718
BspACI	CCGC	2 cut(s)	89, 323
BspANI	GGCC	2 cut(s)	450, 493
BspCNI	CTCAG	1 cut(s)	573
BspDI	ATCGAT	1 cut(s)	688
BspFNI	CGCG	1 cut(s)	475
BspPI	GGATC	1 cut(s)	726
BspT104I	TTCGAA	1 cut(s)	656
BspTNI	GGTCTC	1 cut(s)	470
BsrI	ACTGG	2 cut(s)	600, 712
BssMI	GATC	3 cut(s)	685, 689, 718
BssSI	CACGAG	1 cut(s)	467
Bst2BI	CACGAG	1 cut(s)	467
Bst4CI	ACNGT	1 cut(s)	572
BstBI	TTCGAA	1 cut(s)	656
BstC8I	GCNNGC	4 cut(s)	217, 221, 495, 541
BstDEI	CTNAG	2 cut(s)	530, 581
BstF5I	GGATG	2 cut(s)	149, 378
BstFNI	CGCG	1 cut(s)	475
BstKTI	GATC	3 cut(s)	688, 692, 721
BstMAI	GTCTC	1 cut(s)	470
BstMBI	GATC	3 cut(s)	685, 689, 718
BstMWI	GCNNNNNNNGC	2 cut(s)	116, 540
BstNSI	RCATGY	1 cut(s)	219
BstUI	CGCG	1 cut(s)	475
BstV2I	GAAGAC	1 cut(s)	269
BstX2I	RGATCY	1 cut(s)	718
BstYI	RGATCY	1 cut(s)	718
Bsu15I	ATCGAT	1 cut(s)	688
BsuRI	GGCC	2 cut(s)	450, 493
BsuTUI	ATCGAT	1 cut(s)	688
BtsCI	GGATG	2 cut(s)	149, 378
Cac8I	GCNNGC	4 cut(s)	217, 221, 495, 541
ClaI	ATCGAT	1 cut(s)	688
Csp6I	GTAC	1 cut(s)	457
CviAII	CATG	4 cut(s)	92, 107, 216, 648
CviJI	RGCY	7 cut(s)	279, 326, 390, 450, 493, 539, 652
CviKI_1	RGCY	7 cut(s)	279, 326, 390, 450, 493, 539, 652
CviQI	GTAC	1 cut(s)	457
DdeI	CTNAG	2 cut(s)	530, 581
DpnI	GATC	3 cut(s)	687, 691, 720
DpnII	GATC	3 cut(s)	685, 689, 718
Eco31I	GGTCTC	1 cut(s)	470
EcoT22I	ATGCAT	1 cut(s)	217
FaeI	CATG	4 cut(s)	95, 110, 219, 651
FaqI	GGGAC	1 cut(s)	232
FatI	CATG	4 cut(s)	91, 106, 215, 647
Fnu4HI	GCNGC	1 cut(s)	324
FokI	GGATG	2 cut(s)	136, 385
Fsp4HI	GCNGC	1 cut(s)	324
FspBI	CTAG	3 cut(s)	32, 317, 342
GluI	GCNGC	1 cut(s)	324
GsaI	CCCAGC	1 cut(s)	227
GsuI	CTGGAG	1 cut(s)	695
HaeIII	GGCC	2 cut(s)	450, 493
Hin1II	CATG	4 cut(s)	95, 110, 219, 651
HinfI	GANTC	2 cut(s)	313, 376
Hpy188I	TCNGA	4 cut(s)	10, 154, 582, 668
Hpy188III	TCNNGA	3 cut(s)	32, 310, 625
Hpy99I	CGWCG	1 cut(s)	606
HpyAV	CCTTC	1 cut(s)	480
HpyCH4III	ACNGT	1 cut(s)	572
HpyCH4V	TGCA	3 cut(s)	16, 215, 724
HpyF10VI	GCNNNNNNNGC	2 cut(s)	116, 540
HpyF3I	CTNAG	2 cut(s)	530, 581
Hsp92II	CATG	4 cut(s)	95, 110, 219, 651
Kzo9I	GATC	3 cut(s)	685, 689, 718
LmnI	GCTCC	1 cut(s)	714
LpnPI	CCDG	8 cut(s)	209, 295, 468, 507, 553, 581, 610, 725
MaeI	CTAG	3 cut(s)	32, 317, 342
MaeIII	GTNAC	1 cut(s)	403
MalI	GATC	3 cut(s)	687, 691, 720
MboI	GATC	3 cut(s)	685, 689, 718
MboII	GAAGA	6 cut(s)	223, 274, 329, 413, 421, 640
MflI	RGATCY	1 cut(s)	718
MluCI	AATT	6 cut(s)	63, 114, 286, 498, 517, 619
MmeI	TCCRAC	2 cut(s)	177, 696
MnlI	CCTC	6 cut(s)	45, 146, 363, 483, 633, 674
Mph1103I	ATGCAT	1 cut(s)	217
MseI	TTAA	4 cut(s)	41, 195, 393, 618
MvnI	CGCG	1 cut(s)	475
MwoI	GCNNNNNNNGC	2 cut(s)	116, 540
NdeII	GATC	3 cut(s)	685, 689, 718
NlaIII	CATG	4 cut(s)	95, 110, 219, 651
NmuCI	GTSAC	1 cut(s)	403
NsiI	ATGCAT	1 cut(s)	217
NspI	RCATGY	1 cut(s)	219
NspV	TTCGAA	1 cut(s)	656
PaeI	GCATGC	1 cut(s)	219
PfeI	GAWTC	2 cut(s)	313, 376
PkrI	GCNGC	1 cut(s)	325
PspFI	CCCAGC	1 cut(s)	223
PsuI	RGATCY	1 cut(s)	718
RsaI	GTAC	1 cut(s)	458
RsaNI	GTAC	1 cut(s)	457
SaqAI	TTAA	4 cut(s)	41, 195, 393, 618
SatI	GCNGC	1 cut(s)	324
Sau3AI	GATC	3 cut(s)	685, 689, 718
SetI	ASST	3 cut(s)	41, 281, 299
SfuI	TTCGAA	1 cut(s)	656
SphI	GCATGC	1 cut(s)	219
Sse9I	AATT	6 cut(s)	63, 114, 286, 498, 517, 619
SsiI	CCGC	2 cut(s)	89, 323
SspI	AATATT	1 cut(s)	193
SspMI	CTAG	3 cut(s)	32, 317, 342
TaaI	ACNGT	1 cut(s)	572
TaqI	TCGA	2 cut(s)	656, 688
TasI	AATT	6 cut(s)	63, 114, 286, 498, 517, 619
TauI	GCSGC	1 cut(s)	326
TfiI	GAWTC	2 cut(s)	313, 376
Tru1I	TTAA	4 cut(s)	41, 195, 393, 618
Tru9I	TTAA	4 cut(s)	41, 195, 393, 618
TseFI	GTSAC	1 cut(s)	403
Tsp45I	GTSAC	1 cut(s)	403
TspDTI	ATGAA	4 cut(s)	108, 389, 433, 686
TspGWI	ACGGA	1 cut(s)	10
XapI	RAATTY	1 cut(s)	286
XbaI	TCTAGA	1 cut(s)	31
XceI	RCATGY	1 cut(s)	219
XspI	CTAG	3 cut(s)	32, 317, 342
Zsp2I	ATGCAT	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.