pycom15g08800

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0017188
Physical Location & Seq
Forward (+)
5659248 .. 5660352
1105 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1032 bp
ATGGCCACACCACATCCTTACAACTTTCACCATCTTCCTCTGCTCTCCCTGCTCTCTCTCCTCTGCTCTCTCTCTCTCTCTCTCATCGGCAACAGAGTTAGACTCAGCACCCATGAAAACTCAGCACCCAAAGCTCAAAACGCATCTCTTCTCCTGCGGCTTCTTCCGCCACTGCACCCGCACCGTCCTCAGCCCCACAACCCCTCACCCTCCCCGCCCGACCCGTCAACCCACCACCACTGCCCCTCCAAACCCGACTCCGCCTCCTCTTCCTCCTCCACTTCCCAAAGCTTCACCCAGTGGAAATTCGATCTCCCGGACTCCCCCATCCTCCCTTACTCACAACCCGAACCCGACAGAAAACCCGAACCAACATCAAAACCGCCGCCGCCTCCGCCGCAACCCATTTCCTCCACTAACCTGCAGGAGCTCTTCCATGCAGCGGAGCTCCAGCTCAGCATCGGGTCATACCCGGAGCAGATCGCGGCGCTTCACCTTTTAGAACGCTCACTTGTTCCTTACCCGCCACCAGACCCGGTTTGCCCGCCCGAATTAATGCGCGGGGTAGTAAGAAATTTAAAAAACAAGGCGGCGGCAAAACCGGCAACGAAAATTTTGTTGGCACTTTGTCTGGCGGAGGGAAACCGTCACGTGGCGGTGGAGTCCGGTGCGGCTGCGGCGGTGGTGGAGACGGCATTGGAGTTGGAGGCTGCTTCGGCGGAGCGGTCCCTTGCGGCGTTGGAGCTGATGTGTACTGTGGCGGAGGGGGCGGCGGCGGTGAGGGCGCATGCAATGGCAGTGCCGGTTATGGTGATGATAATGGGAAGGACGTCAGCACGGGGTAAGGAGTATGCGATTGGTGTGCTGGCGGTGATATATGGTGGTGGGGACAATGAAGAGGCGGCGGAGGCTGTGACGGCGGCACCGCGGGAGGAGGTGGCGCGTGCGGTGGAGCTGGCTTTGCAAGGGGATTGTAGTGGCAGAGGGAGGAGGAAAGGGGCCCAGCTACTGAAGGTGCTTCAAGAGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

344

Amino Acids

36.55

Weight (kDa)

6.7

Isoelectric Point (pI)

54.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARM_PUB PF25598 184 - 342 6.5e-23 Plant U-box protein ARM repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017188)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G11550
fragaria_vesca FvH4_2g35860
malus_domestica MD15G1095700.v1.1
prunus_persica Prupe.1G450700_v2.0.a1
pyrus_communis pycom15g08800
rosa_chinensis RchiOBHm_Chr6g0305961
rosa_laevigata RLG00000010842
rosa_multiflora Rmu_sc0001809.1_g000055
rosa_rugosa Rorug06G0345700
rosa_samantha Rh6AG457500 Rh6BG443600 Rh6DG458000
rosa_wichuraiana Rw6G039910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 833
Acc36I ACCTGC 1 cut(s) 429
AccB1I GGYRCC 1 cut(s) 922
AccBSI CCGCTC 1 cut(s) 724
AccII CGCG 4 cut(s) 485, 561, 928, 943
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 3 cut(s) 305, 574, 612
AcuI CTGAAG 1 cut(s) 1031
AcvI CACGTG 1 cut(s) 652
AcyI GRCGYC 1 cut(s) 830
AdeI CACNNNGTG 1 cut(s) 300
AfaI GTAC 1 cut(s) 754
AfiI CCNNNNNNNGG 2 cut(s) 442, 652
AgsI TTSAA 1 cut(s) 1022
AjuI GAANNNNNNNTTGG 2 cut(s) 602, 634
AluBI AGCT 8 cut(s) 134, 291, 430, 448, 454, 745, 955, 1006
AluI AGCT 8 cut(s) 134, 291, 430, 448, 454, 745, 955, 1006
Alw21I GWGCWC 2 cut(s) 432, 450
Alw26I GTCTC 1 cut(s) 683
AlwNI CAGNNNCTG 1 cut(s) 1009
AoxI GGCC 2 cut(s) 3, 999
ApaI GGGCCC 1 cut(s) 1003
ApeKI GCWGC 3 cut(s) 440, 674, 710
ApoI RAATTY 3 cut(s) 305, 574, 612
AseI ATTAAT 1 cut(s) 554
AspLEI GCGC 4 cut(s) 490, 561, 787, 943
AspS9I GGNCC 3 cut(s) 726, 999, 1000
AsuC2I CCSGG 3 cut(s) 317, 473, 536
AsuHPI GGTGA 7 cut(s) 20, 198, 286, 485, 790, 823, 883
AvaII GGWCC 1 cut(s) 726
BaeGI GKGCMC 1 cut(s) 1003
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 922
BanII GRGCYC 3 cut(s) 432, 450, 1003
BbrPI CACGTG 1 cut(s) 652
Bbv12I GWGCWC 2 cut(s) 432, 450
BbvCI CCTCAGC 1 cut(s) 189
BbvI GCAGC 3 cut(s) 452, 661, 697
BccI CCATC 2 cut(s) 39, 335
BceAI ACGGC 2 cut(s) 708, 933
BcgI CGANNNNNNTGC 2 cut(s) 844, 878
BcnI CCSGG 3 cut(s) 317, 473, 536
BcoDI GTCTC 1 cut(s) 683
BfmI CTRYAG 1 cut(s) 422
BfoI RGCGCY 1 cut(s) 491
BfuAI ACCTGC 1 cut(s) 429
BlpI GCTNAGC 1 cut(s) 455
Bme1390I CCNGG 3 cut(s) 317, 473, 536
Bme18I GGWCC 1 cut(s) 726
BmgT120I GGNCC 3 cut(s) 726, 999, 1000
BmiI GGNNCC 4 cut(s) 728, 924, 1000, 1001
BmrFI CCNGG 3 cut(s) 317, 473, 536
BmrI ACTGGG 1 cut(s) 292
BmsI GCATC 2 cut(s) 152, 468
BmuI ACTGGG 1 cut(s) 292
BplI GAGNNNNNCTC 2 cut(s) 87, 119
BpmI CTGGAG 1 cut(s) 434
Bpu10I CCTNAGC 1 cut(s) 189
Bpu1102I GCTNAGC 1 cut(s) 455
BpuMI CCSGG 3 cut(s) 317, 473, 536
BsaAI YACGTR 1 cut(s) 652
BsaHI GRCGYC 1 cut(s) 830
BsaJI CCNNGG 1 cut(s) 926
BsaWI WCCGGW 1 cut(s) 665
BsaXI ACNNNNNCTCC 6 cut(s) 230, 248, 260, 278, 734, 764
Bsc4I CCNNNNNNNGG 2 cut(s) 442, 652
Bse118I RCCGGY 2 cut(s) 601, 802
Bse1I ACTGG 1 cut(s) 298
Bse3DI GCAATG 1 cut(s) 798
BseDI CCNNGG 1 cut(s) 926
BseGI GGATG 2 cut(s) 13, 327
BseLI CCNNNNNNNGG 2 cut(s) 442, 652
BseMI GCAATG 1 cut(s) 798
BseMII CTCAG 4 cut(s) 118, 135, 203, 469
BseNI ACTGG 1 cut(s) 298
BseRI GAGGAG 5 cut(s) 50, 256, 265, 947, 1003
BseSI GKGCMC 1 cut(s) 1003
BseXI GCAGC 3 cut(s) 452, 661, 697
BseYI CCCAGC 1 cut(s) 1002
BsgI GTGCAG 1 cut(s) 158
Bsh1236I CGCG 4 cut(s) 485, 561, 928, 943
BshFI GGCC 2 cut(s) 5, 1001
BshNI GGYRCC 1 cut(s) 922
BsiHKAI GWGCWC 2 cut(s) 432, 450
BsiSI CCGG 6 cut(s) 317, 473, 536, 602, 666, 803
BslFI GGGAC 2 cut(s) 712, 902
BslI CCNNNNNNNGG 2 cut(s) 442, 652
BsmAI GTCTC 1 cut(s) 683
BsmBI CGTCTC 1 cut(s) 683
BsmFI GGGAC 2 cut(s) 712, 902
BsnI GGCC 2 cut(s) 5, 1001
Bsp120I GGGCCC 1 cut(s) 999
Bsp1286I GDGCHC 3 cut(s) 432, 450, 1003
Bsp143I GATC 2 cut(s) 310, 480
Bsp1720I GCTNAGC 1 cut(s) 455
BspANI GGCC 2 cut(s) 5, 1001
BspCNI CTCAG 4 cut(s) 117, 134, 202, 468
BspFNI CGCG 4 cut(s) 485, 561, 928, 943
BspLI GGNNCC 4 cut(s) 728, 924, 1000, 1001
BspMAI CTGCAG 1 cut(s) 426
BspMI ACCTGC 1 cut(s) 429
BspQI GCTCTTC 1 cut(s) 437
BspT107I GGYRCC 1 cut(s) 922
BsrBI CCGCTC 1 cut(s) 724
BsrDI GCAATG 1 cut(s) 798
BsrFI RCCGGY 2 cut(s) 601, 802
BsrI ACTGG 1 cut(s) 298
BssAI RCCGGY 2 cut(s) 601, 802
BssECI CCNNGG 1 cut(s) 926
BssMI GATC 2 cut(s) 310, 480
BssNI GRCGYC 1 cut(s) 830
Bst4CI ACNGT 3 cut(s) 185, 647, 757
Bst6I CTCTTC 4 cut(s) 153, 274, 437, 891
BstACI GRCGYC 1 cut(s) 830
BstBAI YACGTR 1 cut(s) 652
BstC8I GCNNGC 5 cut(s) 545, 789, 867, 945, 957
BstDEI CTNAG 4 cut(s) 104, 121, 189, 455
BstDSI CCRYGG 1 cut(s) 926
BstF5I GGATG 2 cut(s) 13, 327
BstFNI CGCG 4 cut(s) 485, 561, 928, 943
BstH2I RGCGCY 1 cut(s) 491
BstHHI GCGC 4 cut(s) 490, 561, 787, 943
BstKTI GATC 2 cut(s) 313, 483
BstMAI GTCTC 1 cut(s) 683
BstMBI GATC 2 cut(s) 310, 480
BstNSI RCATGY 1 cut(s) 791
BstSCI CCNGG 3 cut(s) 315, 471, 534
BstSFI CTRYAG 1 cut(s) 422
BstSLI GKGCMC 1 cut(s) 1003
BstUI CGCG 4 cut(s) 485, 561, 928, 943
BstV1I GCAGC 3 cut(s) 452, 661, 697
BsuRI GGCC 2 cut(s) 5, 1001
BtgI CCRYGG 1 cut(s) 926
BtsCI GGATG 2 cut(s) 13, 327
BtsI GCAGTG 3 cut(s) 170, 238, 804
BtsIMutI CAGTG 4 cut(s) 170, 238, 305, 804
BveI ACCTGC 1 cut(s) 429
Cac8I GCNNGC 5 cut(s) 545, 789, 867, 945, 957
CaiI CAGNNNCTG 1 cut(s) 1009
CfoI GCGC 4 cut(s) 490, 561, 787, 943
Cfr10I RCCGGY 2 cut(s) 601, 802
Cfr13I GGNCC 3 cut(s) 726, 999, 1000
Cfr42I CCGCGG 1 cut(s) 929
Csp6I GTAC 1 cut(s) 753
CviAII CATG 3 cut(s) 113, 437, 788
CviQI GTAC 1 cut(s) 753
DdeI CTNAG 4 cut(s) 104, 121, 189, 455
DpnI GATC 2 cut(s) 312, 482
DpnII GATC 2 cut(s) 310, 480
DraI TTTAAA 1 cut(s) 579
DraIII CACNNNGTG 1 cut(s) 300
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 4 cut(s) 153, 274, 437, 891
EarI CTCTTC 4 cut(s) 153, 274, 437, 891
EciI GGCGGA 7 cut(s) 156, 250, 384, 650, 734, 776, 920
Ecl136II GAGCTC 2 cut(s) 430, 448
Eco24I GRGCYC 3 cut(s) 432, 450, 1003
Eco47I GGWCC 1 cut(s) 726
Eco53kI GAGCTC 2 cut(s) 430, 448
Eco57I CTGAAG 1 cut(s) 1031
Eco72I CACGTG 1 cut(s) 652
EcoICRI GAGCTC 2 cut(s) 430, 448
EcoO109I RGGNCCY 1 cut(s) 999
EcoT38I GRGCYC 3 cut(s) 432, 450, 1003
Esp3I CGTCTC 1 cut(s) 683
FaeI CATG 3 cut(s) 116, 440, 791
FaiI YATR 8 cut(s) 114, 438, 469, 789, 809, 852, 877, 879
FaqI GGGAC 2 cut(s) 712, 902
FatI CATG 3 cut(s) 112, 436, 787
FauI CCCGC 6 cut(s) 186, 222, 531, 552, 554, 921
FokI GGATG 1 cut(s) 314
FriOI GRGCYC 3 cut(s) 432, 450, 1003
GlaI GCGC 4 cut(s) 489, 560, 786, 942
GsaI CCCAGC 1 cut(s) 1006
GsuI CTGGAG 1 cut(s) 434
HaeII RGCGCY 1 cut(s) 491
HaeIII GGCC 2 cut(s) 5, 1001
HapII CCGG 6 cut(s) 317, 473, 536, 602, 666, 803
HhaI GCGC 4 cut(s) 490, 561, 787, 943
Hin1I GRCGYC 1 cut(s) 830
Hin1II CATG 3 cut(s) 116, 440, 791
Hin6I GCGC 4 cut(s) 488, 559, 785, 941
HinP1I GCGC 4 cut(s) 488, 559, 785, 941
HincII GTYRAC 1 cut(s) 228
HindII GTYRAC 1 cut(s) 228
HindIII AAGCTT 1 cut(s) 289
HinfI GANTC 4 cut(s) 102, 257, 320, 662
HpaII CCGG 6 cut(s) 317, 473, 536, 602, 666, 803
HphI GGTGA 7 cut(s) 20, 198, 286, 485, 790, 823, 883
Hpy166II GTNNAC 2 cut(s) 228, 753
Hpy188III TCNNGA 1 cut(s) 1022
Hpy8I GTNNAC 2 cut(s) 228, 753
HpyAV CCTTC 2 cut(s) 819, 1006
HpyCH4III ACNGT 3 cut(s) 185, 647, 757
HpyCH4IV ACGT 2 cut(s) 651, 830
HpyCH4V TGCA 5 cut(s) 175, 424, 440, 791, 964
HpyF3I CTNAG 4 cut(s) 104, 121, 189, 455
HpySE526I ACGT 2 cut(s) 651, 830
Hsp92I GRCGYC 1 cut(s) 830
Hsp92II CATG 3 cut(s) 116, 440, 791
HspAI GCGC 4 cut(s) 488, 559, 785, 941
KspI CCGCGG 1 cut(s) 929
Kzo9I GATC 2 cut(s) 310, 480
LguI GCTCTTC 1 cut(s) 437
LmnI GCTCC 7 cut(s) 427, 445, 453, 475, 721, 742, 952
Lsp1109I GCAGC 3 cut(s) 452, 661, 697
LweI GCATC 2 cut(s) 152, 468
MaeII ACGT 2 cut(s) 651, 830
MaeIII GTNAC 2 cut(s) 647, 913
MalI GATC 2 cut(s) 312, 482
MbiI CCGCTC 1 cut(s) 724
MboI GATC 2 cut(s) 310, 480
MboII GAAGA 6 cut(s) 26, 140, 155, 261, 424, 908
MhlI GDGCHC 3 cut(s) 432, 450, 1003
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 305, 551, 574, 612
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 4 cut(s) 96, 251, 314, 671
MmeI TCCRAC 2 cut(s) 684, 720
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 554, 578
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 2 cut(s) 443, 928
MspI CCGG 6 cut(s) 317, 473, 536, 602, 666, 803
MspR9I CCNGG 3 cut(s) 317, 473, 536
MvnI CGCG 4 cut(s) 485, 561, 928, 943
NciI CCSGG 3 cut(s) 317, 473, 536
NdeII GATC 2 cut(s) 310, 480
NlaIII CATG 3 cut(s) 116, 440, 791
NlaIV GGNNCC 4 cut(s) 728, 924, 1000, 1001
NmuCI GTSAC 2 cut(s) 647, 913
NspI RCATGY 1 cut(s) 791
PaeI GCATGC 1 cut(s) 791
PciSI GCTCTTC 1 cut(s) 437
PfoI TCCNGGA 1 cut(s) 315
PleI GAGTC 4 cut(s) 96, 251, 314, 670
PmaCI CACGTG 1 cut(s) 652
PmlI CACGTG 1 cut(s) 652
PpsI GAGTC 4 cut(s) 96, 251, 314, 670
Ppu21I YACGTR 1 cut(s) 652
PshBI ATTAAT 1 cut(s) 554
Psp124BI GAGCTC 2 cut(s) 432, 450
PspCI CACGTG 1 cut(s) 652
PspFI CCCAGC 1 cut(s) 1002
PspN4I GGNNCC 4 cut(s) 728, 924, 1000, 1001
PspOMI GGGCCC 1 cut(s) 999
PspPI GGNCC 3 cut(s) 726, 999, 1000
PstI CTGCAG 1 cut(s) 426
PstNI CAGNNNCTG 1 cut(s) 1009
RsaI GTAC 1 cut(s) 754
RsaNI GTAC 1 cut(s) 753
SacI GAGCTC 2 cut(s) 432, 450
SacII CCGCGG 1 cut(s) 929
SapI GCTCTTC 1 cut(s) 437
SaqAI TTAA 2 cut(s) 554, 578
Sau3AI GATC 2 cut(s) 310, 480
Sau96I GGNCC 3 cut(s) 726, 999, 1000
SbfI CCTGCAGG 1 cut(s) 426
SchI GAGTC 4 cut(s) 96, 251, 314, 671
ScrFI CCNGG 3 cut(s) 317, 473, 536
SdaI CCTGCAGG 1 cut(s) 426
SduI GDGCHC 3 cut(s) 432, 450, 1003
SfaNI GCATC 2 cut(s) 152, 468
SfcI CTRYAG 1 cut(s) 422
Sfr303I CCGCGG 1 cut(s) 929
SgrBI CCGCGG 1 cut(s) 929
SinI GGWCC 1 cut(s) 726
SphI GCATGC 1 cut(s) 791
Sse8387I CCTGCAGG 1 cut(s) 426
Sse9I AATT 4 cut(s) 305, 551, 574, 612
SstI GAGCTC 2 cut(s) 432, 450
StyD4I CCNGG 3 cut(s) 315, 471, 534
TaaI ACNGT 3 cut(s) 185, 647, 757
TaiI ACGT 2 cut(s) 654, 833
TaqI TCGA 1 cut(s) 309
TasI AATT 4 cut(s) 305, 551, 574, 612
TatI WGTACW 1 cut(s) 752
Tru1I TTAA 2 cut(s) 554, 578
Tru9I TTAA 2 cut(s) 554, 578
TscAI CASTG 4 cut(s) 177, 245, 305, 804
TseFI GTSAC 2 cut(s) 647, 913
TseI GCWGC 3 cut(s) 440, 674, 710
Tsp45I GTSAC 2 cut(s) 647, 913
TspDTI ATGAA 2 cut(s) 129, 909
TspRI CASTG 4 cut(s) 177, 245, 305, 804
VpaK11BI GGWCC 1 cut(s) 726
VspI ATTAAT 1 cut(s) 554
XapI RAATTY 3 cut(s) 305, 574, 612
XceI RCATGY 1 cut(s) 791
ZraI GACGTC 1 cut(s) 831
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.