Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0009244

Physical Location & Seq

Genomic Coordinates Forward (+)

6255959 .. 6256876

Gene Structure 918 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGTGCATTATTCATTCATGGTAATTGCAGAATTCTTGTTTGCAGATCAACAGATCATCTATAATTTTGTCATAACTTTTTTTTTAAAGCTCCATCTTTTACACCTGAAAGACTCTATTTCAGCAGATTCAGCAGCAGGATTGCCACCACAAACAACAAATCATAACATATTTCAATGGCAGCCGGATACACAAAGCTCTGTTTCCAGTTCCCACGATCAAGATCACCTTGATAAACATGCAGTTCCTGGCCAAGAAGTTGCCGCTATATCCGTTGTTCCCACCTGGTCTTATTCCTCAGATGGTCAGAAAGATGAAGATTGTAGTGGTGTACCATACTCGCCGATGAGCCCTTTGGATATTCCAACCGTTATACCTCCATCCACTGTTCCTCAGTCAGAAATTCTTGAGAGAGTGTCGAAATTCTTCAAGGAGATTGGAGAAGTTAACCCTTCTGAAAGGTCCCTTCATGATTCCGATGGTAGGGATGAGGATGATTATGAAAGAGAGCATGCGGAGCGCAAGGGTGGAGCTTGCATCCCTCCACCCCCAAACATGCAGATGGACCCCGAGACGAGGGCTTATGGTGATGGAAGTGTAGATAGAAAGAGTGGCTCGGGAAGGTTGGGATCGATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006873 GO:0006874 GO:0006875 GO:0007204 GO:0008150 GO:0008285 GO:0009966 GO:0009967 GO:0009987 GO:0010646 GO:0010647 GO:0012505 GO:0016020 GO:0016528 GO:0016529 GO:0019725 GO:0023051 GO:0023056 GO:0030001 GO:0030003 GO:0031090 GO:0031984 GO:0032879 GO:0033017 GO:0034220 GO:0042127 GO:0042175 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044325 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048471 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050848 GO:0050850 GO:0051179 GO:0051209 GO:0051234 GO:0051282 GO:0051283 GO:0051480 GO:0051641 GO:0051649 GO:0055065 GO:0055074 GO:0055080 GO:0055082 GO:0055085 GO:0060401 GO:0060402 GO:0065007 GO:0065008 GO:0070588 GO:0070838 GO:0070884 GO:0070886 GO:0072503 GO:0072507 GO:0072511 GO:0097553 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098827 GO:0106056 GO:0106058 GO:1902531 GO:1902533

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

CTD_bind Surp

Protein Analysis

213

Amino Acids

23.47

Weight (kDa)

4.75

Isoelectric Point (pI)

49.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SWAP1_C	PF25123	108 - 210	1.2e-46	SUPPRESSOR-OF-WHITE-APRICOT-like, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31200 AT4G31200 AT4G31200
fragaria_vesca	FvH4_2g36600
malus_domestica	MD08G1126000.v1.1 MD15G1105800.v1.1
prunus_persica	Prupe.1G457600_v2.0.a1 Prupe.1G457600_v2.0.a1 Prupe.1G457600_v2.0.a1
pyrus_communis	pycom08g10510 pycom15g09600 pycom15g09640
rosa_chinensis	RchiOBHm_Chr6g0305221
rosa_laevigata	RLG00000010907
rosa_multiflora	Rmu_co8150504.1_g000001
rosa_roxburghii	Rroxscaffold_7G00163030
rosa_rugosa	Rorug06G0338700
rosa_samantha	Rh6AG450400 Rh6BG451000 Rh6CG464300 Rh6DG451000
rosa_wichuraiana	Rw6G039250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	264, 515
AclWI	GGATC	1 cut(s)	637
AcoI	YGGCCR	1 cut(s)	250
AcsI	RAATTY	3 cut(s)	32, 402, 422
AfaI	GTAC	1 cut(s)	333
AfiI	CCNNNNNNNGG	2 cut(s)	483, 576
AgsI	TTSAA	2 cut(s)	176, 430
AjnI	CCWGG	2 cut(s)	247, 284
AluBI	AGCT	3 cut(s)	91, 198, 533
AluI	AGCT	3 cut(s)	91, 198, 533
Alw26I	GTCTC	1 cut(s)	566
AlwI	GGATC	1 cut(s)	637
AlwNI	CAGNNNCTG	1 cut(s)	248
Ama87I	CYCGRG	2 cut(s)	569, 616
AoxI	GGCC	1 cut(s)	250
ApeKI	GCWGC	2 cut(s)	134, 181
ApoI	RAATTY	3 cut(s)	32, 402, 422
Asp700I	GAANNNNTTC	1 cut(s)	425
AspLEI	GCGC	1 cut(s)	522
AspS9I	GGNCC	2 cut(s)	462, 565
AsuHPI	GGTGA	2 cut(s)	218, 599
AvaI	CYCGRG	2 cut(s)	569, 616
AvaII	GGWCC	2 cut(s)	462, 565
BalI	TGGCCA	1 cut(s)	252
BanII	GRGCYC	1 cut(s)	353
BbvI	GCAGC	2 cut(s)	146, 193
BccI	CCATC	6 cut(s)	102, 296, 388, 473, 556, 584
BciT130I	CCWGG	2 cut(s)	249, 286
BciVI	GTATCC	1 cut(s)	181
BcoDI	GTCTC	1 cut(s)	566
BfaI	CTAG	1 cut(s)	637
BfuI	GTATCC	1 cut(s)	181
BisI	GCNGC	3 cut(s)	135, 182, 264
BlsI	GCNGC	3 cut(s)	136, 183, 265
Bme1390I	CCNGG	2 cut(s)	249, 286
Bme18I	GGWCC	2 cut(s)	462, 565
BmeT110I	CYCGRG	2 cut(s)	569, 616
BmgT120I	GGNCC	2 cut(s)	462, 565
BmiI	GGNNCC	2 cut(s)	464, 567
BmrFI	CCNGG	2 cut(s)	249, 286
BmsI	GCATC	1 cut(s)	546
BpuEI	CTTGAG	1 cut(s)	428
Bsa29I	ATCGAT	1 cut(s)	632
BsaBI	GATNNNNATC	1 cut(s)	222
Bsc4I	CCNNNNNNNGG	2 cut(s)	483, 576
Bse1I	ACTGG	1 cut(s)	207
Bse8I	GATNNNNATC	1 cut(s)	222
BseBI	CCWGG	2 cut(s)	249, 286
BseCI	ATCGAT	1 cut(s)	632
BseGI	GGATG	4 cut(s)	380, 493, 499, 537
BseJI	GATNNNNATC	1 cut(s)	222
BseLI	CCNNNNNNNGG	2 cut(s)	483, 576
BseMII	CTCAG	2 cut(s)	312, 407
BseNI	ACTGG	1 cut(s)	207
BseXI	GCAGC	2 cut(s)	146, 193
BshFI	GGCC	1 cut(s)	252
BshVI	ATCGAT	1 cut(s)	632
BsiHKCI	CYCGRG	2 cut(s)	569, 616
BsiSI	CCGG	1 cut(s)	185
BslFI	GGGAC	1 cut(s)	448
BslI	CCNNNNNNNGG	2 cut(s)	483, 576
BsmAI	GTCTC	1 cut(s)	566
BsmBI	CGTCTC	1 cut(s)	566
BsmFI	GGGAC	1 cut(s)	448
BsnI	GGCC	1 cut(s)	252
BsoBI	CYCGRG	2 cut(s)	569, 616
Bsp1286I	GDGCHC	1 cut(s)	353
Bsp143I	GATC	6 cut(s)	46, 54, 217, 223, 629, 633
BspACI	CCGC	2 cut(s)	264, 515
BspANI	GGCC	1 cut(s)	252
BspCNI	CTCAG	2 cut(s)	311, 406
BspDI	ATCGAT	1 cut(s)	632
BspHI	TCATGA	1 cut(s)	469
BspLI	GGNNCC	2 cut(s)	464, 567
BspPI	GGATC	1 cut(s)	637
BsrI	ACTGG	1 cut(s)	207
BssMI	GATC	6 cut(s)	46, 54, 217, 223, 629, 633
Bst2UI	CCWGG	2 cut(s)	249, 286
Bst4CI	ACNGT	2 cut(s)	370, 388
BstC8I	GCNNGC	2 cut(s)	513, 535
BstDEI	CTNAG	2 cut(s)	298, 393
BstF5I	GGATG	4 cut(s)	380, 493, 499, 537
BstHHI	GCGC	1 cut(s)	522
BstKTI	GATC	6 cut(s)	49, 57, 220, 226, 632, 636
BstMAI	GTCTC	1 cut(s)	566
BstMBI	GATC	6 cut(s)	46, 54, 217, 223, 629, 633
BstMWI	GCNNNNNNNGC	2 cut(s)	131, 517
BstNI	CCWGG	2 cut(s)	249, 286
BstNSI	RCATGY	3 cut(s)	242, 515, 559
BstSCI	CCNGG	2 cut(s)	247, 284
BstV1I	GCAGC	2 cut(s)	146, 193
Bsu15I	ATCGAT	1 cut(s)	632
BsuI	GTATCC	1 cut(s)	181
BsuRI	GGCC	1 cut(s)	252
BsuTUI	ATCGAT	1 cut(s)	632
BtsCI	GGATG	4 cut(s)	380, 493, 499, 537
BtsIMutI	CAGTG	1 cut(s)	384
Cac8I	GCNNGC	2 cut(s)	513, 535
CaiI	CAGNNNCTG	1 cut(s)	248
CciI	TCATGA	1 cut(s)	469
CfoI	GCGC	1 cut(s)	522
Cfr13I	GGNCC	2 cut(s)	462, 565
ClaI	ATCGAT	1 cut(s)	632
CsiI	ACCWGGT	1 cut(s)	284
Csp6I	GTAC	1 cut(s)	332
CviAII	CATG	5 cut(s)	19, 239, 470, 512, 556
CviJI	RGCY	8 cut(s)	91, 184, 198, 252, 351, 533, 581, 615
CviKI_1	RGCY	8 cut(s)	91, 184, 198, 252, 351, 533, 581, 615
CviQI	GTAC	1 cut(s)	332
DdeI	CTNAG	2 cut(s)	298, 393
DpnI	GATC	6 cut(s)	48, 56, 219, 225, 631, 635
DpnII	GATC	6 cut(s)	46, 54, 217, 223, 629, 633
DraI	TTTAAA	1 cut(s)	87
EaeI	YGGCCR	1 cut(s)	250
Eco24I	GRGCYC	1 cut(s)	353
Eco47I	GGWCC	2 cut(s)	462, 565
Eco88I	CYCGRG	2 cut(s)	569, 616
EcoO109I	RGGNCCY	1 cut(s)	462
EcoRI	GAATTC	1 cut(s)	32
EcoRII	CCWGG	2 cut(s)	247, 284
EcoT38I	GRGCYC	1 cut(s)	353
Esp3I	CGTCTC	1 cut(s)	566
FaeI	CATG	5 cut(s)	22, 242, 473, 515, 559
FalI	AAGNNNNNCTT	2 cut(s)	213, 245
FaqI	GGGAC	1 cut(s)	448
FatI	CATG	5 cut(s)	18, 238, 469, 511, 555
Fnu4HI	GCNGC	3 cut(s)	135, 182, 264
FokI	GGATG	4 cut(s)	367, 500, 506, 524
FriOI	GRGCYC	1 cut(s)	353
Fsp4HI	GCNGC	3 cut(s)	135, 182, 264
FspBI	CTAG	1 cut(s)	637
GlaI	GCGC	1 cut(s)	521
GluI	GCNGC	3 cut(s)	135, 182, 264
HaeIII	GGCC	1 cut(s)	252
HapII	CCGG	1 cut(s)	185
HhaI	GCGC	1 cut(s)	522
Hin1II	CATG	5 cut(s)	22, 242, 473, 515, 559
Hin6I	GCGC	1 cut(s)	520
HinP1I	GCGC	1 cut(s)	520
HincII	GTYRAC	1 cut(s)	448
HindII	GTYRAC	1 cut(s)	448
HinfI	GANTC	3 cut(s)	113, 128, 473
HpaI	GTTAAC	1 cut(s)	448
HpaII	CCGG	1 cut(s)	185
HphI	GGTGA	2 cut(s)	218, 599
Hpy166II	GTNNAC	2 cut(s)	332, 448
Hpy188I	TCNGA	5 cut(s)	301, 309, 400, 457, 478
Hpy188III	TCNNGA	4 cut(s)	221, 407, 470, 618
Hpy8I	GTNNAC	2 cut(s)	332, 448
HpyAV	CCTTC	3 cut(s)	462, 476, 615
HpyCH4III	ACNGT	2 cut(s)	370, 388
HpyCH4V	TGCA	6 cut(s)	7, 29, 44, 242, 537, 559
HpyF10VI	GCNNNNNNNGC	2 cut(s)	131, 517
HpyF3I	CTNAG	2 cut(s)	298, 393
Hsp92II	CATG	5 cut(s)	22, 242, 473, 515, 559
HspAI	GCGC	1 cut(s)	520
KspAI	GTTAAC	1 cut(s)	448
Kzo9I	GATC	6 cut(s)	46, 54, 217, 223, 629, 633
LmnI	GCTCC	3 cut(s)	96, 517, 530
LpnPI	CCDG	8 cut(s)	119, 123, 198, 220, 234, 261, 271, 298
Lsp1109I	GCAGC	2 cut(s)	146, 193
LweI	GCATC	1 cut(s)	546
MabI	ACCWGGT	1 cut(s)	284
MaeI	CTAG	1 cut(s)	637
MalI	GATC	6 cut(s)	48, 56, 219, 225, 631, 635
MboI	GATC	6 cut(s)	46, 54, 217, 223, 629, 633
MboII	GAAGA	2 cut(s)	329, 418
MhlI	GDGCHC	1 cut(s)	353
MlsI	TGGCCA	1 cut(s)	252
MluCI	AATT	5 cut(s)	24, 32, 64, 402, 422
MluNI	TGGCCA	1 cut(s)	252
MlyI	GAGTC	1 cut(s)	107
MmeI	TCCRAC	1 cut(s)	389
MnlI	CCTC	6 cut(s)	307, 387, 402, 484, 552, 570
Mox20I	TGGCCA	1 cut(s)	252
MroXI	GAANNNNTTC	1 cut(s)	425
MscI	TGGCCA	1 cut(s)	252
MseI	TTAA	2 cut(s)	86, 447
MslI	CAYNNNNRTG	1 cut(s)	560
Msp20I	TGGCCA	1 cut(s)	252
MspI	CCGG	1 cut(s)	185
MspR9I	CCNGG	2 cut(s)	249, 286
MvaI	CCWGG	2 cut(s)	249, 286
MwoI	GCNNNNNNNGC	2 cut(s)	131, 517
NdeII	GATC	6 cut(s)	46, 54, 217, 223, 629, 633
NlaIII	CATG	5 cut(s)	22, 242, 473, 515, 559
NlaIV	GGNNCC	2 cut(s)	464, 567
NspI	RCATGY	3 cut(s)	242, 515, 559
PaeI	GCATGC	1 cut(s)	515
PagI	TCATGA	1 cut(s)	469
PdmI	GAANNNNTTC	1 cut(s)	425
PfeI	GAWTC	2 cut(s)	128, 473
PkrI	GCNGC	3 cut(s)	136, 183, 265
PleI	GAGTC	1 cut(s)	107
PpsI	GAGTC	1 cut(s)	107
PpuMI	RGGWCCY	1 cut(s)	462
Psp5II	RGGWCCY	1 cut(s)	462
Psp6I	CCWGG	2 cut(s)	247, 284
PspGI	CCWGG	2 cut(s)	247, 284
PspN4I	GGNNCC	2 cut(s)	464, 567
PspPI	GGNCC	2 cut(s)	462, 565
PspPPI	RGGWCCY	1 cut(s)	462
PstNI	CAGNNNCTG	1 cut(s)	248
RsaI	GTAC	1 cut(s)	333
RsaNI	GTAC	1 cut(s)	332
RseI	CAYNNNNRTG	1 cut(s)	560
SaqAI	TTAA	2 cut(s)	86, 447
SatI	GCNGC	3 cut(s)	135, 182, 264
Sau3AI	GATC	6 cut(s)	46, 54, 217, 223, 629, 633
Sau96I	GGNCC	2 cut(s)	462, 565
SchI	GAGTC	1 cut(s)	107
ScrFI	CCNGG	2 cut(s)	249, 286
SduI	GDGCHC	1 cut(s)	353
SetI	ASST	9 cut(s)	93, 108, 200, 231, 287, 379, 464, 535, 626
SexAI	ACCWGGT	1 cut(s)	284
SfaNI	GCATC	1 cut(s)	546
SinI	GGWCC	2 cut(s)	462, 565
SmiMI	CAYNNNNRTG	1 cut(s)	560
SmlI	CTYRAG	1 cut(s)	407
SmoI	CTYRAG	1 cut(s)	407
SphI	GCATGC	1 cut(s)	515
Sse9I	AATT	5 cut(s)	24, 32, 64, 402, 422
SsiI	CCGC	2 cut(s)	264, 515
SspMI	CTAG	1 cut(s)	637
StyD4I	CCNGG	2 cut(s)	247, 284
TaaI	ACNGT	2 cut(s)	370, 388
TaqI	TCGA	2 cut(s)	419, 632
TasI	AATT	5 cut(s)	24, 32, 64, 402, 422
TauI	GCSGC	1 cut(s)	266
TfiI	GAWTC	2 cut(s)	128, 473
Tru1I	TTAA	2 cut(s)	86, 447
Tru9I	TTAA	2 cut(s)	86, 447
TscAI	CASTG	1 cut(s)	391
TseI	GCWGC	2 cut(s)	134, 181
TspDTI	ATGAA	4 cut(s)	7, 330, 458, 516
TspGWI	ACGGA	1 cut(s)	262
TspRI	CASTG	1 cut(s)	391
VpaK11BI	GGWCC	2 cut(s)	462, 565
XapI	RAATTY	3 cut(s)	32, 402, 422
XceI	RCATGY	3 cut(s)	242, 515, 559
XmnI	GAANNNNTTC	1 cut(s)	425
XspI	CTAG	1 cut(s)	637

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.