Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0009244

Physical Location & Seq

Genomic Coordinates Forward (+)

6277081 .. 6278362

Gene Structure 1282 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGTGATAGTGTTCCATGCTTGCAAGGATTTATCACAACCCCCAAATCACAGAGGATTGCAGCAAATTTTACAGTTGTGGGCTCCTAAGAACATTTATGATCAGGATACTATTGATGCACTAAGGAATGAGATGCTTGGTGGACCATCAAGTAATTCTTTTACAGGGCTTCCAAAAGACTTATCCACTGCTTCAGCAGATTCAGCACCGGATACACAAAGTTCTGTTTCCAGTTCCCACGATCGAGATCACCTTGATAAACATGCAGTTCCTGGCCAAGGCATGCCACTGTCTCTGCCATCCCAGCAATTTCTTCCGAATTCAGTCCCTCCTGTTGCTTTTCCCGGGTCCATTTGCGGTGAGAAGTTGCCTCCATATCCGTTGTTCCCACCTGGTCTTATTCCTCAGATGGTCAGAAAGATGCAGATTGGCAGTGGTGTACCATGCTCGCTGATGAGCCCTTTGGATATTCCAACCGTGTTACCTCCATCCACTGTTCCTCAGTTAAAAATTCTTGAGAGAGTGTCGAAATTCTTCAAGGAGATTGGAGAAGTTAAACCTTCTGAAAGGTCCCTTCATGATTCCGATGGTAGGGATGAGGATGATTATGAAAGAGAGCATGCGGAGCGCAAGGGTGGAGCTTGCATCCCTCCACCCCAAAACATGCAGATGGACCCCGAGACGAGGGCTTATGCTGATGGAAGTGTAGATAGAAAGAGTGGCTCGGGAAGGTTGGGATTAGGGGCCACAACTAATCCAAATGAGGCAAGCCAGTACGACGATGTTTATTCTTCTTACAGGAAACAGAGAAGCACCAACTACCACTCATCCATGAGTGCAAGAGCTTCAGCTAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006873 GO:0006874 GO:0006875 GO:0007204 GO:0008150 GO:0008285 GO:0009966 GO:0009967 GO:0009987 GO:0010646 GO:0010647 GO:0012505 GO:0016020 GO:0016528 GO:0016529 GO:0019725 GO:0023051 GO:0023056 GO:0030001 GO:0030003 GO:0031090 GO:0031984 GO:0032879 GO:0033017 GO:0034220 GO:0042127 GO:0042175 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044325 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048471 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050848 GO:0050850 GO:0051179 GO:0051209 GO:0051234 GO:0051282 GO:0051283 GO:0051480 GO:0051641 GO:0051649 GO:0055065 GO:0055074 GO:0055080 GO:0055082 GO:0055085 GO:0060401 GO:0060402 GO:0065007 GO:0065008 GO:0070588 GO:0070838 GO:0070884 GO:0070886 GO:0072503 GO:0072507 GO:0072511 GO:0097553 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098827 GO:0106056 GO:0106058 GO:1902531 GO:1902533

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

CTD_bind Surp

Protein Analysis

286

Amino Acids

31.09

Weight (kDa)

6.06

Isoelectric Point (pI)

56.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SWAP1_C	PF25123	125 - 285	3.6e-84	SUPPRESSOR-OF-WHITE-APRICOT-like, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31200 AT4G31200 AT4G31200
fragaria_vesca	FvH4_2g36600
malus_domestica	MD08G1126000.v1.1 MD15G1105800.v1.1
prunus_persica	Prupe.1G457600_v2.0.a1 Prupe.1G457600_v2.0.a1 Prupe.1G457600_v2.0.a1
pyrus_communis	pycom08g10510 pycom15g09600 pycom15g09640
rosa_chinensis	RchiOBHm_Chr6g0305221
rosa_laevigata	RLG00000010907
rosa_multiflora	Rmu_co8150504.1_g000001
rosa_roxburghii	Rroxscaffold_7G00163030
rosa_rugosa	Rorug06G0338700
rosa_samantha	Rh6AG450400 Rh6BG451000 Rh6CG464300 Rh6DG451000
rosa_wichuraiana	Rw6G039250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	357, 623
AcoI	YGGCCR	1 cut(s)	274
AcsI	RAATTY	4 cut(s)	66, 319, 510, 530
AcuI	CTGAAG	2 cut(s)	177, 831
AfaI	GTAC	2 cut(s)	441, 776
AfiI	CCNNNNNNNGG	3 cut(s)	278, 591, 684
AgsI	TTSAA	1 cut(s)	538
AjnI	CCWGG	2 cut(s)	271, 391
AluBI	AGCT	3 cut(s)	641, 845, 851
AluI	AGCT	3 cut(s)	641, 845, 851
Alw26I	GTCTC	2 cut(s)	297, 674
AlwNI	CAGNNNCTG	1 cut(s)	272
Ama87I	CYCGRG	3 cut(s)	344, 677, 724
AoxI	GGCC	2 cut(s)	274, 744
ApeKI	GCWGC	1 cut(s)	61
ApoI	RAATTY	4 cut(s)	66, 319, 510, 530
Asp700I	GAANNNNTTC	1 cut(s)	533
AspLEI	GCGC	1 cut(s)	630
AspS9I	GGNCC	5 cut(s)	143, 348, 570, 673, 744
AsuC2I	CCSGG	2 cut(s)	345, 346
AsuHPI	GGTGA	3 cut(s)	16, 242, 371
AvaI	CYCGRG	3 cut(s)	344, 677, 724
AvaII	GGWCC	4 cut(s)	143, 348, 570, 673
BalI	TGGCCA	1 cut(s)	276
BanII	GRGCYC	2 cut(s)	85, 461
BbvI	GCAGC	1 cut(s)	73
BccI	CCATC	7 cut(s)	154, 307, 403, 496, 581, 664, 692
BciT130I	CCWGG	2 cut(s)	273, 393
BciVI	GTATCC	2 cut(s)	100, 205
BclI	TGATCA	1 cut(s)	100
BcnI	CCSGG	2 cut(s)	345, 346
BcoDI	GTCTC	2 cut(s)	297, 674
BfaI	CTAG	1 cut(s)	852
BfuI	GTATCC	2 cut(s)	100, 205
BisI	GCNGC	1 cut(s)	62
BlsI	GCNGC	1 cut(s)	63
Bme1390I	CCNGG	4 cut(s)	273, 345, 346, 393
Bme18I	GGWCC	4 cut(s)	143, 348, 570, 673
BmeT110I	CYCGRG	3 cut(s)	344, 677, 724
BmgT120I	GGNCC	5 cut(s)	143, 348, 570, 673, 744
BmiI	GGNNCC	5 cut(s)	84, 349, 572, 675, 745
BmrFI	CCNGG	4 cut(s)	273, 345, 346, 393
BmsI	GCATC	4 cut(s)	106, 123, 411, 654
BpuEI	CTTGAG	1 cut(s)	536
BpuMI	CCSGG	2 cut(s)	345, 346
BsaBI	GATNNNNATC	1 cut(s)	246
BsaJI	CCNNGG	2 cut(s)	277, 344
BsaWI	WCCGGW	1 cut(s)	208
Bsc4I	CCNNNNNNNGG	3 cut(s)	278, 591, 684
Bse1I	ACTGG	2 cut(s)	231, 772
Bse8I	GATNNNNATC	1 cut(s)	246
BseBI	CCWGG	2 cut(s)	273, 393
BseDI	CCNNGG	2 cut(s)	277, 344
BseGI	GGATG	6 cut(s)	299, 488, 601, 607, 645, 827
BseJI	GATNNNNATC	1 cut(s)	246
BseLI	CCNNNNNNNGG	3 cut(s)	278, 591, 684
BseMII	CTCAG	2 cut(s)	419, 515
BseNI	ACTGG	2 cut(s)	231, 772
BseXI	GCAGC	1 cut(s)	73
BseYI	CCCAGC	1 cut(s)	303
Bsh1285I	CGRYCG	1 cut(s)	244
BshFI	GGCC	2 cut(s)	276, 746
BsiEI	CGRYCG	1 cut(s)	244
BsiHKCI	CYCGRG	3 cut(s)	344, 677, 724
BsiSI	CCGG	2 cut(s)	209, 345
BslFI	GGGAC	2 cut(s)	311, 556
BslI	CCNNNNNNNGG	3 cut(s)	278, 591, 684
BsmAI	GTCTC	2 cut(s)	297, 674
BsmBI	CGTCTC	1 cut(s)	674
BsmFI	GGGAC	2 cut(s)	311, 556
BsnI	GGCC	2 cut(s)	276, 746
BsoBI	CYCGRG	3 cut(s)	344, 677, 724
Bsp1286I	GDGCHC	2 cut(s)	85, 461
Bsp143I	GATC	3 cut(s)	100, 241, 247
BspACI	CCGC	2 cut(s)	357, 623
BspANI	GGCC	2 cut(s)	276, 746
BspCNI	CTCAG	2 cut(s)	418, 514
BspHI	TCATGA	1 cut(s)	577
BspLI	GGNNCC	5 cut(s)	84, 349, 572, 675, 745
BsrI	ACTGG	2 cut(s)	231, 772
BssECI	CCNNGG	2 cut(s)	277, 344
BssMI	GATC	3 cut(s)	100, 241, 247
BssT1I	CCWWGG	1 cut(s)	277
Bst2UI	CCWGG	2 cut(s)	273, 393
Bst4CI	ACNGT	4 cut(s)	75, 291, 478, 496
BstC8I	GCNNGC	6 cut(s)	22, 284, 449, 621, 643, 769
BstDEI	CTNAG	4 cut(s)	87, 122, 405, 501
BstENI	CCTNNNNNAGG	1 cut(s)	276
BstF5I	GGATG	6 cut(s)	299, 488, 601, 607, 645, 827
BstHHI	GCGC	1 cut(s)	630
BstKTI	GATC	3 cut(s)	103, 244, 250
BstMAI	GTCTC	2 cut(s)	297, 674
BstMBI	GATC	3 cut(s)	100, 241, 247
BstMCI	CGRYCG	1 cut(s)	244
BstMWI	GCNNNNNNNGC	3 cut(s)	203, 304, 625
BstNI	CCWGG	2 cut(s)	273, 393
BstNSI	RCATGY	4 cut(s)	266, 286, 623, 667
BstSCI	CCNGG	4 cut(s)	271, 343, 344, 391
BstV1I	GCAGC	1 cut(s)	73
BsuI	GTATCC	2 cut(s)	100, 205
BsuRI	GGCC	2 cut(s)	276, 746
BtsCI	GGATG	6 cut(s)	299, 488, 601, 607, 645, 827
BtsI	GCAGTG	2 cut(s)	186, 439
BtsIMutI	CAGTG	4 cut(s)	186, 287, 439, 492
Cac8I	GCNNGC	6 cut(s)	22, 284, 449, 621, 643, 769
CaiI	CAGNNNCTG	1 cut(s)	272
CciI	TCATGA	1 cut(s)	577
CfoI	GCGC	1 cut(s)	630
Cfr13I	GGNCC	5 cut(s)	143, 348, 570, 673, 744
Cfr9I	CCCGGG	1 cut(s)	344
CsiI	ACCWGGT	1 cut(s)	391
Csp6I	GTAC	2 cut(s)	440, 775
CviAII	CATG	8 cut(s)	17, 263, 283, 444, 578, 620, 664, 832
CviQI	GTAC	2 cut(s)	440, 775
DdeI	CTNAG	4 cut(s)	87, 122, 405, 501
DpnI	GATC	3 cut(s)	102, 243, 249
DpnII	GATC	3 cut(s)	100, 241, 247
EaeI	YGGCCR	1 cut(s)	274
Eco130I	CCWWGG	1 cut(s)	277
Eco24I	GRGCYC	2 cut(s)	85, 461
Eco47I	GGWCC	4 cut(s)	143, 348, 570, 673
Eco57I	CTGAAG	2 cut(s)	177, 831
Eco88I	CYCGRG	3 cut(s)	344, 677, 724
EcoNI	CCTNNNNNAGG	1 cut(s)	276
EcoO109I	RGGNCCY	1 cut(s)	570
EcoRI	GAATTC	1 cut(s)	319
EcoRII	CCWGG	2 cut(s)	271, 391
EcoT14I	CCWWGG	1 cut(s)	277
EcoT38I	GRGCYC	2 cut(s)	85, 461
ErhI	CCWWGG	1 cut(s)	277
Esp3I	CGTCTC	1 cut(s)	674
FaeI	CATG	8 cut(s)	20, 266, 286, 447, 581, 623, 667, 835
FalI	AAGNNNNNCTT	2 cut(s)	142, 174
FaqI	GGGAC	2 cut(s)	311, 556
FatI	CATG	8 cut(s)	16, 262, 282, 443, 577, 619, 663, 831
FbaI	TGATCA	1 cut(s)	100
Fnu4HI	GCNGC	1 cut(s)	62
FokI	GGATG	6 cut(s)	286, 475, 608, 614, 632, 814
FriOI	GRGCYC	2 cut(s)	85, 461
Fsp4HI	GCNGC	1 cut(s)	62
FspBI	CTAG	1 cut(s)	852
GlaI	GCGC	1 cut(s)	629
GluI	GCNGC	1 cut(s)	62
GsaI	CCCAGC	1 cut(s)	307
HaeIII	GGCC	2 cut(s)	276, 746
HapII	CCGG	2 cut(s)	209, 345
HhaI	GCGC	1 cut(s)	630
Hin1II	CATG	8 cut(s)	20, 266, 286, 447, 581, 623, 667, 835
Hin6I	GCGC	1 cut(s)	628
HinP1I	GCGC	1 cut(s)	628
HinfI	GANTC	2 cut(s)	200, 581
HpaII	CCGG	2 cut(s)	209, 345
HphI	GGTGA	3 cut(s)	16, 242, 371
Hpy166II	GTNNAC	2 cut(s)	143, 440
Hpy188I	TCNGA	5 cut(s)	318, 408, 416, 565, 586
Hpy188III	TCNNGA	5 cut(s)	104, 245, 515, 578, 726
Hpy8I	GTNNAC	2 cut(s)	143, 440
Hpy99I	CGWCG	1 cut(s)	782
HpyAV	CCTTC	3 cut(s)	570, 584, 723
HpyCH4III	ACNGT	4 cut(s)	75, 291, 478, 496
HpyCH4V	TGCA	8 cut(s)	24, 61, 119, 266, 424, 645, 667, 839
HpyF10VI	GCNNNNNNNGC	3 cut(s)	203, 304, 625
HpyF3I	CTNAG	4 cut(s)	87, 122, 405, 501
Hsp92II	CATG	8 cut(s)	20, 266, 286, 447, 581, 623, 667, 835
HspAI	GCGC	1 cut(s)	628
Ksp22I	TGATCA	1 cut(s)	100
Kzo9I	GATC	3 cut(s)	100, 241, 247
LmnI	GCTCC	3 cut(s)	88, 625, 638
Lsp1109I	GCAGC	1 cut(s)	73
LweI	GCATC	4 cut(s)	106, 123, 411, 654
MabI	ACCWGGT	1 cut(s)	391
MaeI	CTAG	1 cut(s)	852
MaeIII	GTNAC	1 cut(s)	480
MalI	GATC	3 cut(s)	102, 243, 249
MboI	GATC	3 cut(s)	100, 241, 247
MboII	GAAGA	3 cut(s)	305, 526, 783
MhlI	GDGCHC	2 cut(s)	85, 461
MlsI	TGGCCA	1 cut(s)	276
MluCI	AATT	6 cut(s)	66, 154, 308, 319, 510, 530
MluNI	TGGCCA	1 cut(s)	276
MmeI	TCCRAC	1 cut(s)	497
Mox20I	TGGCCA	1 cut(s)	276
MroXI	GAANNNNTTC	1 cut(s)	533
MscI	TGGCCA	1 cut(s)	276
MseI	TTAA	2 cut(s)	506, 555
MslI	CAYNNNNRTG	1 cut(s)	668
Msp20I	TGGCCA	1 cut(s)	276
MspI	CCGG	2 cut(s)	209, 345
MspR9I	CCNGG	4 cut(s)	273, 345, 346, 393
MvaI	CCWGG	2 cut(s)	273, 393
MwoI	GCNNNNNNNGC	3 cut(s)	203, 304, 625
NciI	CCSGG	2 cut(s)	345, 346
NdeII	GATC	3 cut(s)	100, 241, 247
NlaIII	CATG	8 cut(s)	20, 266, 286, 447, 581, 623, 667, 835
NlaIV	GGNNCC	5 cut(s)	84, 349, 572, 675, 745
NspI	RCATGY	4 cut(s)	266, 286, 623, 667
PaeI	GCATGC	2 cut(s)	286, 623
PagI	TCATGA	1 cut(s)	577
PdmI	GAANNNNTTC	1 cut(s)	533
PfeI	GAWTC	2 cut(s)	200, 581
PkrI	GCNGC	1 cut(s)	63
Ple19I	CGATCG	1 cut(s)	244
PpuMI	RGGWCCY	1 cut(s)	570
Psp5II	RGGWCCY	1 cut(s)	570
Psp6I	CCWGG	2 cut(s)	271, 391
PspFI	CCCAGC	1 cut(s)	303
PspGI	CCWGG	2 cut(s)	271, 391
PspN4I	GGNNCC	5 cut(s)	84, 349, 572, 675, 745
PspPI	GGNCC	5 cut(s)	143, 348, 570, 673, 744
PspPPI	RGGWCCY	1 cut(s)	570
PstNI	CAGNNNCTG	1 cut(s)	272
PvuI	CGATCG	1 cut(s)	244
RsaI	GTAC	2 cut(s)	441, 776
RsaNI	GTAC	2 cut(s)	440, 775
RseI	CAYNNNNRTG	1 cut(s)	668
SaqAI	TTAA	2 cut(s)	506, 555
SatI	GCNGC	1 cut(s)	62
Sau3AI	GATC	3 cut(s)	100, 241, 247
Sau96I	GGNCC	5 cut(s)	143, 348, 570, 673, 744
ScrFI	CCNGG	4 cut(s)	273, 345, 346, 393
SduI	GDGCHC	2 cut(s)	85, 461
SexAI	ACCWGGT	1 cut(s)	391
SfaNI	GCATC	4 cut(s)	106, 123, 411, 654
SinI	GGWCC	4 cut(s)	143, 348, 570, 673
SmaI	CCCGGG	1 cut(s)	346
SmiMI	CAYNNNNRTG	1 cut(s)	668
SmlI	CTYRAG	1 cut(s)	515
SmoI	CTYRAG	1 cut(s)	515
SphI	GCATGC	2 cut(s)	286, 623
Sse9I	AATT	6 cut(s)	66, 154, 308, 319, 510, 530
SsiI	CCGC	2 cut(s)	357, 623
SspMI	CTAG	1 cut(s)	852
StyD4I	CCNGG	4 cut(s)	271, 343, 344, 391
StyI	CCWWGG	1 cut(s)	277
TaaI	ACNGT	4 cut(s)	75, 291, 478, 496
TaqI	TCGA	2 cut(s)	244, 527
TasI	AATT	6 cut(s)	66, 154, 308, 319, 510, 530
TfiI	GAWTC	2 cut(s)	200, 581
Tru1I	TTAA	2 cut(s)	506, 555
Tru9I	TTAA	2 cut(s)	506, 555
TscAI	CASTG	4 cut(s)	193, 294, 439, 499
TseI	GCWGC	1 cut(s)	61
TspDTI	ATGAA	2 cut(s)	566, 624
TspGWI	ACGGA	1 cut(s)	369
TspMI	CCCGGG	1 cut(s)	344
TspRI	CASTG	4 cut(s)	193, 294, 439, 499
VpaK11BI	GGWCC	4 cut(s)	143, 348, 570, 673
XagI	CCTNNNNNAGG	1 cut(s)	276
XapI	RAATTY	4 cut(s)	66, 319, 510, 530
XceI	RCATGY	4 cut(s)	266, 286, 623, 667
XmaI	CCCGGG	1 cut(s)	344
XmnI	GAANNNNTTC	1 cut(s)	533
XspI	CTAG	1 cut(s)	852

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.